From 55004e5386409308af8bb13f9f9f0a6732cacb87 Mon Sep 17 00:00:00 2001 From: FelixErnst Date: Sat, 13 Jan 2024 16:07:37 +0100 Subject: [PATCH] Fixed dependency for available tRNAdb server for build success --- .Rbuildignore | 1 + DESCRIPTION | 6 +++--- vignettes/EpiTxDb-creation.Rmd | 3 ++- 3 files changed, 6 insertions(+), 4 deletions(-) diff --git a/.Rbuildignore b/.Rbuildignore index cfb5009..ba053e1 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -1,5 +1,6 @@ ^.*\.Rproj$ ^\.Rproj\.user$ +^\.github$ .travis.yml ^.*\.gz ^.*\.fsa diff --git a/DESCRIPTION b/DESCRIPTION index 75c3e06..f2085db 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: EpiTxDb Type: Package Title: Storing and accessing epitranscriptomic information using the AnnotationDbi interface -Version: 1.15.0 -Date: 2021-03-25 +Version: 1.15.1 +Date: 2024-01-13 Authors@R: person("Felix G.M.", "Ernst", email = "felix.gm.ernst@outlook.com", @@ -69,7 +69,7 @@ Collate: 'modificationsBy.R' 'ranges-helpers.R' 'select-methods.R' -RoxygenNote: 7.1.1 +RoxygenNote: 7.2.3 BugReports: https://github.com/FelixErnst/EpiTxDb/issues URL: https://github.com/FelixErnst/EpiTxDb VignetteBuilder: knitr diff --git a/vignettes/EpiTxDb-creation.Rmd b/vignettes/EpiTxDb-creation.Rmd index 54d7f00..a6dabf1 100644 --- a/vignettes/EpiTxDb-creation.Rmd +++ b/vignettes/EpiTxDb-creation.Rmd @@ -77,7 +77,8 @@ which the modifications can be extracted using `separate()`. The only input require is a valid organism name returned by `listAvailableOrganismsFromtRNAdb()`. -```{r} +```{r, eval=FALSE} +# Currently not run since the server is not available etdb <- makeEpiTxDbFromtRNAdb("Saccharomyces cerevisiae") etdb ```