diff --git a/.helm/adhoc/cert.yaml b/.helm/adhoc/cert.yaml
new file mode 100644
index 0000000..dbdfcb8
--- /dev/null
+++ b/.helm/adhoc/cert.yaml
@@ -0,0 +1,42 @@
+apiVersion: cert-manager.io/v1
+kind: Certificate
+metadata:
+  name: siibra-jugex-certificate
+spec:
+  isCA: false
+  commonName: siibra-jugex.apps.tc.humanbrainproject.eu
+  dnsNames:
+  - siibra-jugex.apps.tc.humanbrainproject.eu
+  issuerRef:
+    kind: ClusterIssuer
+    name: letsencrypt-production-issuer-1
+  privateKey:
+    algorithm: RSA
+    encoding: PKCS1
+    size: 2048
+  renewBefore: 120h0m0s
+  secretName: siibra-jugex-prod-secret
+  usages:
+  - server auth
+---
+
+apiVersion: cert-manager.io/v1
+kind: Certificate
+metadata:
+  name: neurogenpy-certificate
+spec:
+  isCA: false
+  commonName: ngpy.apps.hbp.eu
+  dnsNames:
+  - ngpy.apps.hbp.eu
+  issuerRef:
+    kind: ClusterIssuer
+    name: letsencrypt-production-issuer-1
+  privateKey:
+    algorithm: RSA
+    encoding: PKCS1
+    size: 2048
+  renewBefore: 120h0m0s
+  secretName: neurogenpy-prod-secret
+  usages:
+  - server auth
\ No newline at end of file
diff --git a/.helm/adhoc/configmap.yaml b/.helm/adhoc/configmap.yaml
new file mode 100644
index 0000000..22913c6
--- /dev/null
+++ b/.helm/adhoc/configmap.yaml
@@ -0,0 +1,10 @@
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: jugex-toolbox
+data:
+  SIIBRA_TOOLBOX_LOG_DIR: /siibra-tool-log
+  SIIBRA_TOOLBOX_DATA_DIR: /siibra-tool-data
+  SIIBRA_JURGEX_CELERY_BROKER: redis://redis:6379 
+  SIIBRA_JURGEX_CELERY_RESULT: redis://redis:6379
+  SIIBRA_CACHEDIR: /siibra-tool-data/tmp
diff --git a/.helm/adhoc/cron.yaml b/.helm/adhoc/cron.yaml
new file mode 100644
index 0000000..067cb56
--- /dev/null
+++ b/.helm/adhoc/cron.yaml
@@ -0,0 +1,30 @@
+apiVersion: batch/v1
+kind: CronJob
+metadata:
+  name: cronjob-trim-old-log-usage
+spec:
+  # run two month
+  schedule: "41 1 */5 */2 *"
+  concurrencyPolicy: Replace
+  jobTemplate:
+    spec:
+      template:
+        spec:
+          containers:
+          - name: cronjob-trim-old-log-usage
+            image: docker-registry.ebrains.eu/monitoring/kubectl:v1.29.2
+            imagePullPolicy: Always
+            command:
+            - /bin/ash
+            - -c
+            # delete all files over 30 days of modification date
+            - "find /siibra-tool-log -mindepth 1 -maxdepth 1 -mtime +30 -delete"
+            volumeMounts:
+              - mountPath: /siibra-tool-log
+                name: log-volume
+
+          restartPolicy: OnFailure
+          volumes:
+          - name: log-volume
+            persistentVolumeClaim:
+              claimName: log-volume-claim-2
diff --git a/.helm/adhoc/deployment.yaml b/.helm/adhoc/deployment.yaml
new file mode 100644
index 0000000..194d952
--- /dev/null
+++ b/.helm/adhoc/deployment.yaml
@@ -0,0 +1,60 @@
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: redis
+spec:
+  progressDeadlineSeconds: 600
+  replicas: 1
+  revisionHistoryLimit: 10
+  selector:
+    matchLabels:
+      app: redis
+  strategy:
+    rollingUpdate:
+      maxSurge: 25%
+      maxUnavailable: 25%
+    type: RollingUpdate
+  template:
+    metadata:
+      labels:
+        app: redis
+    spec:
+      containers:
+      - image: docker-registry.ebrains.eu/monitoring/redis:alpine3.17
+        imagePullPolicy: IfNotPresent
+        livenessProbe:
+          exec:
+            command:
+            - redis-cli
+            - ping
+          failureThreshold: 3
+          periodSeconds: 30
+          successThreshold: 1
+          timeoutSeconds: 1
+        name: redis
+        ports:
+        - containerPort: 6379
+          protocol: TCP
+        readinessProbe:
+          exec:
+            command:
+            - redis-cli
+            - ping
+          failureThreshold: 3
+          periodSeconds: 10
+          successThreshold: 1
+          timeoutSeconds: 1
+        resources:
+          limits:
+            cpu: 200m
+            memory: 1Gi
+          requests:
+            cpu: 100m
+            memory: 128Mi
+        terminationMessagePath: /dev/termination-log
+        terminationMessagePolicy: File
+      dnsPolicy: ClusterFirst
+      restartPolicy: Always
+      schedulerName: default-scheduler
+      securityContext: {}
+      terminationGracePeriodSeconds: 30
diff --git a/.helm/adhoc/ingress.yaml b/.helm/adhoc/ingress.yaml
new file mode 100644
index 0000000..c86fa3f
--- /dev/null
+++ b/.helm/adhoc/ingress.yaml
@@ -0,0 +1,33 @@
+apiVersion: networking.k8s.io/v1
+kind: Ingress
+metadata:
+  name: jugex-toolbox
+spec:
+  rules:
+  - host: siibra-jugex.apps.tc.humanbrainproject.eu
+    http:
+      paths:
+      - backend:
+          service:
+            name: jugex-toolbox
+            port:
+              number: 6001
+        path: /
+        pathType: ImplementationSpecific
+  - host: ngpy.apps.hbp.eu
+    http:
+      paths:
+      - backend:
+          service:
+            name: neurogenpy-toolbox
+            port:
+              number: 6001
+        path: /
+        pathType: ImplementationSpecific
+  tls:
+  - hosts:
+    - siibra-jugex.apps.tc.humanbrainproject.eu
+    secretName: siibra-jugex-prod-secret
+  - hosts:
+    - ngpy.apps.hbp.eu
+    secretName: neurogenpy-prod-secret
diff --git a/.helm/adhoc/pvc.yaml b/.helm/adhoc/pvc.yaml
new file mode 100644
index 0000000..f01a2c6
--- /dev/null
+++ b/.helm/adhoc/pvc.yaml
@@ -0,0 +1,27 @@
+apiVersion: v1
+kind: PersistentVolumeClaim
+metadata:
+  labels:
+    type: longhorn-pvc
+  name: data-volume-claim
+spec:
+  accessModes:
+  - ReadWriteMany
+  resources:
+    requests:
+      storage: 16Gi
+  storageClassName: longhorn-1
+---
+apiVersion: v1
+kind: PersistentVolumeClaim
+metadata:
+  labels:
+    type: longhorn-pvc
+  name: log-volume-claim-2
+spec:
+  accessModes:
+  - ReadWriteMany
+  resources:
+    requests:
+      storage: 4Gi
+  storageClassName: longhorn-1
\ No newline at end of file
diff --git a/.helm/adhoc/service.yaml b/.helm/adhoc/service.yaml
new file mode 100644
index 0000000..effbac2
--- /dev/null
+++ b/.helm/adhoc/service.yaml
@@ -0,0 +1,14 @@
+apiVersion: v1
+kind: Service
+metadata:
+  labels:
+    app: redis
+  name: redis
+spec:
+  ports:
+  - port: 6379
+    protocol: TCP
+    targetPort: 6379
+  selector:
+    app: redis
+  type: ClusterIP
\ No newline at end of file
diff --git a/.helm/deploy_neurogenpy.sh b/.helm/deploy_neurogenpy.sh
new file mode 100755
index 0000000..92dad14
--- /dev/null
+++ b/.helm/deploy_neurogenpy.sh
@@ -0,0 +1,16 @@
+#! /bin/bash
+
+SERVER_IMG="docker-registry.ebrains.eu/siibra-toolbox/neurogenpy"
+WORKER_IMG="docker-registry.ebrains.eu/siibra-toolbox/neurogenpy"
+SERVER_TAG="server"
+WORKER_TAG="worker"
+
+helm install neurogenpy ./toolbox \
+    --set image.serverRepository=$SERVER_IMG \
+    --set image.workerRepository=$WORKER_IMG \
+    --set image.serverTag=$SERVER_TAG \
+    --set image.workerTag=$WORKER_TAG \
+    --set workerResources.limits.memory=4Gi \
+    --set envObj.NEUROGENPY_CELERY_BROKER=redis://redis:6379 \
+    --set envObj.NEUROGENPY_CELERY_RESULT=redis://redis:6379
+    
\ No newline at end of file
diff --git a/.helm/toolbox/.helmignore b/.helm/toolbox/.helmignore
new file mode 100644
index 0000000..0e8a0eb
--- /dev/null
+++ b/.helm/toolbox/.helmignore
@@ -0,0 +1,23 @@
+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*.orig
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj
+.vscode/
diff --git a/.helm/toolbox/Chart.yaml b/.helm/toolbox/Chart.yaml
new file mode 100644
index 0000000..36ab714
--- /dev/null
+++ b/.helm/toolbox/Chart.yaml
@@ -0,0 +1,24 @@
+apiVersion: v2
+name: toolbox
+description: A Helm chart for Kubernetes
+
+# A chart can be either an 'application' or a 'library' chart.
+#
+# Application charts are a collection of templates that can be packaged into versioned archives
+# to be deployed.
+#
+# Library charts provide useful utilities or functions for the chart developer. They're included as
+# a dependency of application charts to inject those utilities and functions into the rendering
+# pipeline. Library charts do not define any templates and therefore cannot be deployed.
+type: application
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+# Versions are expected to follow Semantic Versioning (https://semver.org/)
+version: 0.1.0
+
+# This is the version number of the application being deployed. This version number should be
+# incremented each time you make changes to the application. Versions are not expected to
+# follow Semantic Versioning. They should reflect the version the application is using.
+# It is recommended to use it with quotes.
+appVersion: "0.0.2"
diff --git a/.helm/toolbox/templates/NOTES.txt b/.helm/toolbox/templates/NOTES.txt
new file mode 100644
index 0000000..3d4da44
--- /dev/null
+++ b/.helm/toolbox/templates/NOTES.txt
@@ -0,0 +1,22 @@
+1. Get the application URL by running these commands:
+{{- if .Values.ingress.enabled }}
+{{- range $host := .Values.ingress.hosts }}
+  {{- range .paths }}
+  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ $host.host }}{{ .path }}
+  {{- end }}
+{{- end }}
+{{- else if contains "NodePort" .Values.service.type }}
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "toolbox.fullname" . }})
+  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
+  echo http://$NODE_IP:$NODE_PORT
+{{- else if contains "LoadBalancer" .Values.service.type }}
+     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
+           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "toolbox.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "toolbox.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
+  echo http://$SERVICE_IP:{{ .Values.service.port }}
+{{- else if contains "ClusterIP" .Values.service.type }}
+  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "toolbox.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
+  export CONTAINER_PORT=$(kubectl get pod --namespace {{ .Release.Namespace }} $POD_NAME -o jsonpath="{.spec.containers[0].ports[0].containerPort}")
+  echo "Visit http://127.0.0.1:8080 to use your application"
+  kubectl --namespace {{ .Release.Namespace }} port-forward $POD_NAME 8080:$CONTAINER_PORT
+{{- end }}
diff --git a/.helm/toolbox/templates/_helpers.tpl b/.helm/toolbox/templates/_helpers.tpl
new file mode 100644
index 0000000..eb4b86f
--- /dev/null
+++ b/.helm/toolbox/templates/_helpers.tpl
@@ -0,0 +1,62 @@
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "toolbox.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "toolbox.fullname" -}}
+{{- if .Values.fullnameOverride }}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- $name := default .Chart.Name .Values.nameOverride }}
+{{- if contains $name .Release.Name }}
+{{- .Release.Name | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" }}
+{{- end }}
+{{- end }}
+{{- end }}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "toolbox.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Common labels
+*/}}
+{{- define "toolbox.labels" -}}
+helm.sh/chart: {{ include "toolbox.chart" . }}
+{{ include "toolbox.selectorLabels" . }}
+{{- if .Chart.AppVersion }}
+app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+{{- end }}
+app.kubernetes.io/managed-by: {{ .Release.Service }}
+{{- end }}
+
+{{/*
+Selector labels
+*/}}
+{{- define "toolbox.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "toolbox.name" . }}
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- end }}
+
+{{/*
+Create the name of the service account to use
+*/}}
+{{- define "toolbox.serviceAccountName" -}}
+{{- if .Values.serviceAccount.create }}
+{{- default (include "toolbox.fullname" .) .Values.serviceAccount.name }}
+{{- else }}
+{{- default "default" .Values.serviceAccount.name }}
+{{- end }}
+{{- end }}
diff --git a/.helm/toolbox/templates/hpa.yaml b/.helm/toolbox/templates/hpa.yaml
new file mode 100644
index 0000000..e1cbb58
--- /dev/null
+++ b/.helm/toolbox/templates/hpa.yaml
@@ -0,0 +1,32 @@
+{{- if .Values.autoscaling.enabled }}
+apiVersion: autoscaling/v2
+kind: HorizontalPodAutoscaler
+metadata:
+  name: {{ include "toolbox.fullname" . }}
+  labels:
+    {{- include "toolbox.labels" . | nindent 4 }}
+spec:
+  scaleTargetRef:
+    apiVersion: apps/v1
+    kind: Deployment
+    name: {{ include "toolbox.fullname" . }}-worker
+  minReplicas: {{ .Values.autoscaling.minReplicas }}
+  maxReplicas: {{ .Values.autoscaling.maxReplicas }}
+  metrics:
+    {{- if .Values.autoscaling.targetCPUUtilizationPercentage }}
+    - type: Resource
+      resource:
+        name: cpu
+        target:
+          type: Utilization
+          averageUtilization: {{ .Values.autoscaling.targetCPUUtilizationPercentage }}
+    {{- end }}
+    {{- if .Values.autoscaling.targetMemoryUtilizationPercentage }}
+    - type: Resource
+      resource:
+        name: memory
+        target:
+          type: Utilization
+          averageUtilization: {{ .Values.autoscaling.targetMemoryUtilizationPercentage }}
+    {{- end }}
+{{- end }}
diff --git a/.helm/toolbox/templates/ingress.yaml b/.helm/toolbox/templates/ingress.yaml
new file mode 100644
index 0000000..5ccb94f
--- /dev/null
+++ b/.helm/toolbox/templates/ingress.yaml
@@ -0,0 +1,61 @@
+{{- if .Values.ingress.enabled -}}
+{{- $fullName := include "toolbox.fullname" . -}}
+{{- $svcPort := .Values.service.port -}}
+{{- if and .Values.ingress.className (not (semverCompare ">=1.18-0" .Capabilities.KubeVersion.GitVersion)) }}
+  {{- if not (hasKey .Values.ingress.annotations "kubernetes.io/ingress.class") }}
+  {{- $_ := set .Values.ingress.annotations "kubernetes.io/ingress.class" .Values.ingress.className}}
+  {{- end }}
+{{- end }}
+{{- if semverCompare ">=1.19-0" .Capabilities.KubeVersion.GitVersion -}}
+apiVersion: networking.k8s.io/v1
+{{- else if semverCompare ">=1.14-0" .Capabilities.KubeVersion.GitVersion -}}
+apiVersion: networking.k8s.io/v1beta1
+{{- else -}}
+apiVersion: extensions/v1beta1
+{{- end }}
+kind: Ingress
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "toolbox.labels" . | nindent 4 }}
+  {{- with .Values.ingress.annotations }}
+  annotations:
+    {{- toYaml . | nindent 4 }}
+  {{- end }}
+spec:
+  {{- if and .Values.ingress.className (semverCompare ">=1.18-0" .Capabilities.KubeVersion.GitVersion) }}
+  ingressClassName: {{ .Values.ingress.className }}
+  {{- end }}
+  {{- if .Values.ingress.tls }}
+  tls:
+    {{- range .Values.ingress.tls }}
+    - hosts:
+        {{- range .hosts }}
+        - {{ . | quote }}
+        {{- end }}
+      secretName: {{ .secretName }}
+    {{- end }}
+  {{- end }}
+  rules:
+    {{- range .Values.ingress.hosts }}
+    - host: {{ .host | quote }}
+      http:
+        paths:
+          {{- range .paths }}
+          - path: {{ .path }}
+            {{- if and .pathType (semverCompare ">=1.18-0" $.Capabilities.KubeVersion.GitVersion) }}
+            pathType: {{ .pathType }}
+            {{- end }}
+            backend:
+              {{- if semverCompare ">=1.19-0" $.Capabilities.KubeVersion.GitVersion }}
+              service:
+                name: {{ $fullName }}
+                port:
+                  number: {{ $svcPort }}
+              {{- else }}
+              serviceName: {{ $fullName }}
+              servicePort: {{ $svcPort }}
+              {{- end }}
+          {{- end }}
+    {{- end }}
+{{- end }}
diff --git a/.helm/toolbox/templates/server-deployment.yaml b/.helm/toolbox/templates/server-deployment.yaml
new file mode 100644
index 0000000..e5a87ed
--- /dev/null
+++ b/.helm/toolbox/templates/server-deployment.yaml
@@ -0,0 +1,78 @@
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ include "toolbox.fullname" . }}-server
+  labels:
+    {{- include "toolbox.labels" . | nindent 4 }}
+    role: server
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      {{- include "toolbox.selectorLabels" . | nindent 6 }}
+  template:
+    metadata:
+      {{- with .Values.podAnnotations }}
+      annotations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      labels:
+        {{- include "toolbox.labels" . | nindent 8 }}
+        {{- with .Values.podLabels }}
+        {{- toYaml . | nindent 8 }}
+        {{- end }}
+        role: server
+    spec:
+      {{- with .Values.imagePullSecrets }}
+      imagePullSecrets:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      serviceAccountName: {{ include "toolbox.serviceAccountName" . }}
+      securityContext:
+        {{- toYaml .Values.podSecurityContext | nindent 8 }}
+      containers:
+        - name: {{ .Chart.Name }}
+          securityContext:
+            {{- toYaml .Values.securityContext | nindent 12 }}
+          image: "{{ .Values.image.serverRepository }}:{{ .Values.image.serverTag | default .Values.image.tag | default .Chart.AppVersion }}"
+          imagePullPolicy: {{ .Values.image.pullPolicy }}
+          ports:
+            - name: http
+              containerPort: {{ .Values.service.port }}
+              protocol: TCP
+          envFrom:
+            - configMapRef:
+                name: jugex-toolbox
+            - secretRef:
+                name: ebrains-lab-integration
+          env:
+            {{- range $key, $val := .Values.envObj }}
+            - name: {{ $key }}
+              value: {{ $val }}
+            {{- end }}
+          livenessProbe:
+            {{- toYaml .Values.livenessProbe | nindent 12 }}
+          readinessProbe:
+            {{- toYaml .Values.readinessProbe | nindent 12 }}
+          resources:
+            {{- toYaml .Values.serverResources | nindent 12 }}
+          {{- with .Values.volumeMounts }}
+          volumeMounts:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+      {{- with .Values.volumes }}
+      volumes:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.nodeSelector }}
+      nodeSelector:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.affinity }}
+      affinity:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.tolerations }}
+      tolerations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
diff --git a/.helm/toolbox/templates/service.yaml b/.helm/toolbox/templates/service.yaml
new file mode 100644
index 0000000..188dd25
--- /dev/null
+++ b/.helm/toolbox/templates/service.yaml
@@ -0,0 +1,16 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ include "toolbox.fullname" . }}
+  labels:
+    {{- include "toolbox.labels" . | nindent 4 }}
+spec:
+  type: {{ .Values.service.type }}
+  ports:
+    - port: {{ .Values.service.port }}
+      targetPort: http
+      protocol: TCP
+      name: http
+  selector:
+    role: server
+    {{- include "toolbox.selectorLabels" . | nindent 4 }}
diff --git a/.helm/toolbox/templates/serviceaccount.yaml b/.helm/toolbox/templates/serviceaccount.yaml
new file mode 100644
index 0000000..458bcdc
--- /dev/null
+++ b/.helm/toolbox/templates/serviceaccount.yaml
@@ -0,0 +1,13 @@
+{{- if .Values.serviceAccount.create -}}
+apiVersion: v1
+kind: ServiceAccount
+metadata:
+  name: {{ include "toolbox.serviceAccountName" . }}
+  labels:
+    {{- include "toolbox.labels" . | nindent 4 }}
+  {{- with .Values.serviceAccount.annotations }}
+  annotations:
+    {{- toYaml . | nindent 4 }}
+  {{- end }}
+automountServiceAccountToken: {{ .Values.serviceAccount.automount }}
+{{- end }}
diff --git a/.helm/toolbox/templates/tests/test-connection.yaml b/.helm/toolbox/templates/tests/test-connection.yaml
new file mode 100644
index 0000000..79a5768
--- /dev/null
+++ b/.helm/toolbox/templates/tests/test-connection.yaml
@@ -0,0 +1,15 @@
+apiVersion: v1
+kind: Pod
+metadata:
+  name: "{{ include "toolbox.fullname" . }}-test-connection"
+  labels:
+    {{- include "toolbox.labels" . | nindent 4 }}
+  annotations:
+    "helm.sh/hook": test
+spec:
+  containers:
+    - name: wget
+      image: busybox
+      command: ['wget']
+      args: ['{{ include "toolbox.fullname" . }}:{{ .Values.service.port }}']
+  restartPolicy: Never
diff --git a/.helm/toolbox/templates/worker-deployment.yaml b/.helm/toolbox/templates/worker-deployment.yaml
new file mode 100644
index 0000000..18b1527
--- /dev/null
+++ b/.helm/toolbox/templates/worker-deployment.yaml
@@ -0,0 +1,71 @@
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ include "toolbox.fullname" . }}-worker
+  labels:
+    {{- include "toolbox.labels" . | nindent 4 }}
+    role: worker
+spec:
+  {{- if not .Values.autoscaling.enabled }}
+  replicas: {{ .Values.replicaCount }}
+  {{- end }}
+  selector:
+    matchLabels:
+      {{- include "toolbox.selectorLabels" . | nindent 6 }}
+  template:
+    metadata:
+      {{- with .Values.podAnnotations }}
+      annotations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      labels:
+        {{- include "toolbox.labels" . | nindent 8 }}
+        {{- with .Values.podLabels }}
+        {{- toYaml . | nindent 8 }}
+        {{- end }}
+        role: worker
+    spec:
+      {{- with .Values.imagePullSecrets }}
+      imagePullSecrets:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      serviceAccountName: {{ include "toolbox.serviceAccountName" . }}
+      securityContext:
+        {{- toYaml .Values.podSecurityContext | nindent 8 }}
+      containers:
+        - name: {{ .Chart.Name }}
+          envFrom:
+            - configMapRef:
+                name: jugex-toolbox
+          env:
+            {{- range $key, $val := .Values.envObj }}
+            - name: {{ $key }}
+              value: {{ $val }}
+            {{- end }}
+            
+          securityContext:
+            {{- toYaml .Values.securityContext | nindent 12 }}
+          image: "{{ .Values.image.workerRepository }}:{{ .Values.image.workerTag | default .Values.image.tag | default .Chart.AppVersion }}"
+          imagePullPolicy: {{ .Values.image.pullPolicy }}
+          resources:
+            {{- toYaml .Values.workerResources | nindent 12 }}
+          {{- with .Values.volumeMounts }}
+          volumeMounts:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+      {{- with .Values.volumes }}
+      volumes:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.nodeSelector }}
+      nodeSelector:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.affinity }}
+      affinity:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.tolerations }}
+      tolerations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
diff --git a/.helm/toolbox/values.yaml b/.helm/toolbox/values.yaml
new file mode 100644
index 0000000..cee9367
--- /dev/null
+++ b/.helm/toolbox/values.yaml
@@ -0,0 +1,119 @@
+# Default values for toolbox.
+# This is a YAML-formatted file.
+# Declare variables to be passed into your templates.
+
+replicaCount: 1
+
+image:
+  serverRepository: docker-registry.ebrains.eu/siibra-toolbox/siibra-jugex-server
+  workerRepository: docker-registry.ebrains.eu/siibra-toolbox/siibra-jugex-worker
+  pullPolicy: IfNotPresent
+  # Overrides the image tag whose default is the chart appVersion.
+  serverTag: ""
+  workerTag: ""
+  tag: ""
+
+imagePullSecrets: []
+nameOverride: ""
+fullnameOverride: ""
+
+serviceAccount:
+  # Specifies whether a service account should be created
+  create: true
+  # Automatically mount a ServiceAccount's API credentials?
+  automount: true
+  # Annotations to add to the service account
+  annotations: {}
+  # The name of the service account to use.
+  # If not set and create is true, a name is generated using the fullname template
+  name: ""
+
+podAnnotations: {}
+podLabels: {}
+
+podSecurityContext: {}
+  # fsGroup: 2000
+
+securityContext: {}
+  # capabilities:
+  #   drop:
+  #   - ALL
+  # readOnlyRootFilesystem: true
+  # runAsNonRoot: true
+  # runAsUser: 1000
+
+service:
+  type: ClusterIP
+  port: 6001
+
+ingress:
+  enabled: false
+  className: ""
+  annotations: {}
+    # kubernetes.io/ingress.class: nginx
+    # kubernetes.io/tls-acme: "true"
+  hosts:
+    - host: chart-example.local
+      paths:
+        - path: /
+          pathType: ImplementationSpecific
+  tls: []
+  #  - secretName: chart-example-tls
+  #    hosts:
+  #      - chart-example.local
+
+serverResources: 
+  limits:
+    cpu: 200m
+    memory: 256Mi
+  requests:
+    cpu: 100m
+    memory: 128Mi
+
+workerResources: 
+  limits:
+    cpu: 1500m
+    memory: 1Gi
+  requests:
+    cpu: 600m
+    memory: 512Mi
+
+livenessProbe:
+  httpGet:
+    path: /
+    port: http
+readinessProbe:
+  httpGet:
+    path: /
+    port: http
+
+autoscaling:
+  enabled: false
+  minReplicas: 1
+  maxReplicas: 100
+  targetCPUUtilizationPercentage: 80
+  # targetMemoryUtilizationPercentage: 80
+
+# Additional volumes on the output Deployment definition.
+volumes: 
+- name: log-volume
+  persistentVolumeClaim:
+    claimName: log-volume-claim
+- name: data-volume
+  persistentVolumeClaim:
+    claimName: data-volume-claim
+
+# Additional volumeMounts on the output Deployment definition.
+volumeMounts: 
+- mountPath: /siibra-tool-log
+  name: log-volume
+- mountPath: /siibra-tool-data
+  name: data-volume
+
+nodeSelector: {}
+
+tolerations: []
+
+affinity: {}
+
+envObj: {}
\ No newline at end of file
diff --git a/http_wrapper/server.py b/http_wrapper/server.py
index 8520be8..4d22656 100644
--- a/http_wrapper/server.py
+++ b/http_wrapper/server.py
@@ -53,4 +53,19 @@ def shutdown_event():
     # TODO doesn't work quite right
     # shutdown handler isn't called until ctrl+c is hit twice
     on_exit()
-    
\ No newline at end of file
+
+
+do_not_logs = (
+    "GET / HTTP",
+)
+
+import logging
+class EndpointLoggingFilter(logging.Filter):
+    """Custom logger filter. Do not log metrics, ready endpoint."""
+    def filter(self, record: logging.LogRecord) -> bool:
+        message = record.getMessage()
+        return all(
+            message.find(do_not_log) == -1 for do_not_log in do_not_logs
+        )
+
+logging.getLogger("uvicorn.access").addFilter(EndpointLoggingFilter())