docker-compose.yml

services:
  # Run SERIE in development mode in an existing miniChRIS network.
  dev:
    build:
      context: .
    command: fastapi dev --host 0.0.0.0 main.py
    volumes:
      - ./src:/app:ro
    ports:
      - 8888:8000
    networks:
      minichris-local:
        aliases:
          - dev.serie
  # End-to-end testing
  test:
    image: localhost/fnndsc/serie:dev
    build: &build
      context: .
      args:
        REQUIREMENTS_FILE: requirements-dev.lock
    command: pytest --color=yes --code-highlight=yes --run-integration
    working_dir: /app
    volumes:
      # /app is a volume and the source code files are binded as subdirectories
      # instead of directly mounting `.:/app` so that pytest and coverage can
      # write temporary files to /app
      - test:/app
      - ./src/serie:/app/serie:ro
      - ./tests:/app/tests:ro
      - ./hasura:/hasura:ro
    environment:
      CHRIS_HOST: http://chris:8000
    networks:
      minichris-local:
        aliases:
          - test.serie
    # Setup and test reset functions should be described here
    depends_on:
      setup-hasura:
        condition: service_completed_successfully
      setup-and-reset-cube:
        condition: service_completed_successfully
    profiles:
      - test

  setup-hasura:
    image: ghcr.io/fnndsc/hasura-cli:2.44.0
    command: hasura metadata apply
    volumes:
      - ./hasura:/hasura:ro
    working_dir: /hasura
    networks:
      minichris-local:
    profiles:
      - test
  setup-and-reset-cube:
    image: localhost/fnndsc/serie:dev
    build: *build
    volumes:
      - ./src/serie:/app/serie:ro
      - ./tests:/app/tests:ro
      - /var/run/docker.sock:/var/run/docker.sock
    working_dir: /app
    command: python -m tests.e2e_setup_and_reset
    environment:
      CHRIS_HOST: http://chris:8000
    networks:
      minichris-local:
    profiles:
      - test

networks:
  minichris-local:
    external: true
volumes:
  test: