test.yml

name: Test

on:
  push:
    branches: [ master ]
    paths:
      - '.github/workflows/test.yml'
      - '**.py'
  pull_request:

jobs:
  test:
    name: Tests
    runs-on: ubuntu-24.04
    steps:
      - uses: actions/checkout@v4
      - name: Spin up ChRIS
        uses: FNNDSC/miniChRIS-docker@master
        with:
          # for testing, we need to create plugin instances, but we don't need the plugins to actually run.
          services: chris oxidicom graphql-engine
      - name: Build
        run: docker compose build test
      - name: Test
        id: test
        continue-on-error: true  # we want to upload coverage, even on failure
        run: docker compose run -T --use-aliases test pytest --color=yes --cov=serie --cov-report=xml --run-e2e
      - name: Copy coverage.xml from container
        run: docker cp "$(docker compose ps -a test -q | tail -n 1):/app/coverage.xml" coverage.xml
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          files: ./coverage.xml
          fail_ci_if_error: true
          token: ${{ secrets.CODECOV_TOKEN }}