README.md

microminc

microminc.sh is a simple script which copies binary executables and their dynamically linked libraries to a new directory. It is hard-coded to work with MNI software. It is useful for minimizing OCI images of CIVET + MINC tools.

Examples

• https://github.com/FNNDSC/pl-nii2mnc/tree/main/base
• https://github.com/FNNDSC/pl-bichamfer/tree/main/base
• https://github.com/FNNDSC/pl-fetal-surface-extract/tree/main/base (includes Perl scripts and data models)

Local Development

Build

docker build -t localhost/fnndsc/microminc:latest .

Test

docker run --rm -it \
    -v "$PWD/microminc.sh:/usr/local/bin/microminc.sh:ro" \
    -v "$PWD/test.sh:/test.sh:ro" \
    localhost/fnndsc/microminc:latest /test.sh

License

microminc.sh itself is MIT-licensed. CIVET is not free software, its license can be found here: https://github.com/aces/CIVET_Full_Project/blob/master/LICENSE