Releases · FEniCS/dolfinx

Fix wheel building ifs by @jhale in #2169
Bump version to 0.4.2.dev0 by @jhale in #2170
Check all not None forms, DirichletBC raise by @michalhabera in #2153
Correct shape of matrices for custom element by @mscroggs in #2171
Bump Docker base to Ubuntu 22.04 and other package updates by @garth-wells in #2172
Make CoordinateElement appear in online docs by @chrisrichardson in #2174
Spack CI updates and improvements by @garth-wells in #2175
Paramterise CI over UFL, FFCx and UFL tags/branches by @garth-wells in #2176
Add TNT element demo by @mscroggs in #2173
Spack Actions CI updates by @garth-wells in #2178
Tweak demo text by @mscroggs in #2179
doc: linear typo by @minrk in #2181
Update for name of KaHIP library by @garth-wells in #2183
KaHIP detection logic fix by @garth-wells in #2184
Fix scheduled Spack test by @garth-wells in #2186
Disable Spack build on push by @garth-wells in #2188
Use more free functions in la/Vector.h by @IgorBaratta in #2189
Add unofficial vtk wheel for usage with pyvista to lab image by @jorgensd in #2191
Remove some xtensor from mesh utility code by @garth-wells in #2193
Revised IndexMap and new Scatterer class by @garth-wells in #2182
Fix assertion in Scatterer by @IgorBaratta in #2195
Install numpy from source wheels by @jhale in #2194
Fix vector norm call by @garth-wells in #2196
Fix some typos and outdated documentation in the demos by @nate-sime in #2199
Rename folder for dolfinx python installation in docker images. by @jorgensd in #2200
Revise plotting with matplotlib in parallel by @jorgensd in #2202
Update Basix interpolation matrix shapes by @mscroggs in #2197
Fix errors and add mypy to CI by @jhale in #2190
Remove duplicate functionality for finding exterior facets (mesh:: compute_boundary_facets removed) by @garth-wells in #2203
Fix assembly of rectangular arrays of block matrices by @garth-wells in #2204
Fix comment in interpolation demo (C++) by @garth-wells in #2206
Remove unused and untested form_degree by @garth-wells in #2207
Expose function MeshTags.find to Python by @jorgensd in #2209
Fix for VTXWriter for meshes with no cells on some ranks by @jpdean in #2210
Add pugixml to Docker files by @garth-wells in #2212
Fix python version in dolfinx-complex/real-mode by @jorgensd in #2211
Fix VTKFile and VTXWriter for Paraview's (>=5.10.0) plotting of second order hexahedra by @jorgensd in #2214
Tighter control over ufcx discovery method by @garth-wells in #2215
Remove pugixml source from repository by @garth-wells in #2208
Fix minimum NumPy version (required to support typing) by @garth-wells in #2216
Fix complex mode in dolfinx/dolfinx images by @jorgensd in #2217
Change pugixml CMake target to be backwards compatible by @jorgensd in #2223
cpp/test: remove extra semicolon by @minrk in #2228
Expose basix::FiniteElement by @nate-sime in #2205
Compensate for flake8 F822 to check members of __all__ are implemented by @nate-sime in #2227
Add missing attribute to Fides files by @massimiliano-leoni in #2231
Update README.md with conda instructions by @garth-wells in #2230
Fix incorrect assert in Scatterer by @jpdean in #2224
Add CFFI to setup.py by @jorgensd in #2234
Minor improvements to transfer_cell/facet_meshtags by @jorgensd in #2226
Revert MPI/CMake change from #2116. Fixes #2229. by @garth-wells in #2238
Flatten integral domains in C++ by @jorgensd in #2225
Bump ADIOS2 version in Dockerfile. Should allow C++20 compilation. by @garth-wells in #2239
Update NumPy to v1.22 in Dockerfile by @garth-wells in #2241
Transpose Basix's polynomials::tabulate by @mscroggs in #2213
Minor Sphinx config fix by @garth-wells in #2246
Upgrade sphinx during CI run by @mscroggs in #2249
Remove forced update of Sphinx version by @mscroggs in #2250
Support geometry type passed to ufcx kernels matching the scalar type by @garth-wells in #2252
Reset FFCx branch in CI by @garth-wells in #2253
Allow sparsity pattern to be built from integration entities by @jpdean in #2244
Add /usr/local/lib to PYTHONPATH for Jupyter/ipython kernel json file for PETSc complex mode by @jorgensd in #2247
Use helper template (from C++ 17 and onwards) for std::is_same::value and std::is_integral::value by @jorgensd in #2256
Add missing function parameter names of pybind11 generated functions by @atouminet in #2222
Bump pyvista version by @jorgensd in #2257
Create submodule for gmsh tools by @jorgensd in #2131
Updates for Basix changes by @garth-wells in #2263
Fix custom kernel subdomains by @michalhabera in #2262
Updates for xtensor removal from Basix by @garth-wells in #2267
Rewrite GMSH interface by @jorgensd in #2261
Move to C++20 by @garth-wells in #2111
Use gcc 10 in Spack CI by @garth-wells in #2268
Remove xtensor from geometry code by @garth-wells in #2270
Fix geometry bug by @jorgensd in #2273
Remove some xtensor from refinement code. by @jorgensd in #2255
Remove xtensor from VTK helper interface by @garth-wells in #2272
Remove xtensor code from element code by @garth-wells in #2278
Remove redundant xtensor code by @garth-wells in #2280
X is not a property by @mscroggs in #2283
Fix interpolation for non-affine geometries for discrete operator (interpolation_matrix) and non-matching maps in function.interpolate by @jorgensd in #2281
Bump dependency versions in Dockerfile by @garth-wells in #2285
Add basic conda testing to CI by @garth-wells in #2286
Dockerfile dependency version bumps by @garth-wells in #2289
Remove non-existent function from C++ docs by @jorgensd in #2290
Zero work array in fem::CoordinateElement::compute_jacobian_determinant by @jorgensd in #2291
Add ipygany and pythreejs to dolfinx/lab. by @jorgensd in #2288
Fix Docker lab image for arm64 by @jorgensd in #2294
Remove some function callback from C++ to Python by @garth-wells in #2293
Make mypy blocking and fix error by @mscroggs in #2296
Simplify Constant construction by @garth-wells in #2295
Updates to packaging and installation by @jhale in #2292
Update README.md by @drew-parsons in #2302
Try a MacOS build by @jhale in #2300
Enable zlib for hdf5 in docker images by @jorgensd in #2311

New Contributors

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Contributors

minrk, jhale, and 11 other contributors

Assets 2

06 May 15:42

jhale

v0.4.1

64d7468

v0.4.1

What's changed

Fix partitioner test by @IgorBaratta in #2150
Add Lagrange variant demo by @mscroggs in #2140
Bump pyvista and fix dolfinx/lab by @jorgensd in #2154
Remove some xtensor functions from pull_back_nonaffine by @jorgensd in #2149
Update version by @chrisrichardson in #2156
Set blas directory for RedHat CI by @IgorBaratta in #2160
Remove assumption that degree == highest_degree by @mscroggs in #2159
Add HHJ element to FEM pipeline test by @jhale in #2163
Add possibility to manually trigger Docker builds e.g. on release. by @jhale in #2164
Add matplotlib to Docker environment, remove from workflows. by @jhale in #2165
Fix docker default branches and tags by @jhale in #2167
Do not modify version header file source code in-place by @garth-wells in #2166

Full Changelog: v0.4.0...v0.4.1

Contributors

jhale, garth-wells, and 4 other contributors

Assets 2

29 Apr 08:52

garth-wells

v0.4.0

fa8c71c

Version 0.4.0

What's Changed

Remove references to uf_geometry.h in cmakeFindUFC.cmake by @IgorBaratta in #1551
Allow user to supply form constants and coefficients to assemblers by @garth-wells in #1553
Fix geometry dimension to 3 in assembler by @garth-wells in #1555
Store C code from FFCx JIT by @michalhabera in #1556
Update version by @chrisrichardson in #1554
Gmsh bump + src install by @jorgensd in #1559
Avoid splitting of Expression::eval functionality across two files by @garth-wells in #1560
Template over block size for common cases for vector (RHS) assembly by @garth-wells in #1552
Add --init to lab instruction by @jhale in #1561
More vector functionality by @chrisrichardson in #1566
Allow control over mesh graph re-ordering by @garth-wells in #1567
Support re-ordering of cells by @garth-wells in #1571
Move DOF transformations out of kernel by @mscroggs in #1568
Update FFCx branch for CI by @garth-wells in #1573
Avoid creation of spans in tight loops by @garth-wells in #1574
More reference use and performance improvements by @garth-wells in #1575
Use fixed-with Numpy integer types by @garth-wells in #1578
Fix for Intel classic compiler by @garth-wells in #1579
Bump dependency versions in Dockerfile by @garth-wells in #1576
Residual0 now initialized for residual method. by @jorgensd in #1581
Expose dof permutation bools by @jorgensd in #1580
Just warn about topology instead of throwing error by @chrisrichardson in #1584
Update spack instructions by @chrisrichardson in #1583
Simplify tabulation through dolfinx::FiniteElement by @jorgensd in #1565
Update element interface by @mscroggs in #1582
Performance updates for pull backs by @garth-wells in #1588
Template la::Vector over allocator by @IgorBaratta in #1587
Fix array2d for USM allocators by @IgorBaratta in #1589
Revise forward and reverse scatter in IndexMap by @garth-wells in #1594
Remove the 'symmetric' neighbourhood communicator from IndexMap by @garth-wells in #1595
Correct indexing (fixes #1597). by @garth-wells in #1599
Reduce number of GPS re-ordering passes for mesh cells by @garth-wells in #1600
Cleanup helmholtz demo by @jorgensd in #1601
Add MPI_Type_dup to copy and move by @chrisrichardson in #1602
Simplification in IndexMap for scattering by @garth-wells in #1605
Fix domain id of refined meshes by @IgorBaratta in #1604
Expose set_update in newton-solver by @jorgensd in #1606
Add test for "RTCF" elements by @jpdean in #1607
Only push real32 docs by @mscroggs in #1608
Expose map pull_back and test it with dolfinx.Expression by @jorgensd in #1590
Permit only required data to be passed to IndexMap scatters by @garth-wells in #1609
Get entity closure dofs from ffc rather than recomputing by @mscroggs in #1586
Update KaHIP version and build by @garth-wells in #1614
Fix KaHIP test by @IgorBaratta in #1615
Push docker images with tag prefix by @mscroggs in #1611
Fix misunderstanding of MPI dist graph comm reordering by @garth-wells in #1617
Fix Docker builds by @jhale in #1619
Jhale/fix docker end user build by @jhale in #1620
Jhale/fix docker end user build by @jhale in #1621
Jhale/fix docker end user build by @jhale in #1624
Jhale/fix docker end user build by @jhale in #1625
Jhale/fix docker end user build by @jhale in #1627
Jhale/fix docker end user build by @jhale in #1628
Modernise HDF5 detection via cmake by @garth-wells in #1630
Add radix sort and argsort (lexicographic) by @IgorBaratta in #1622
Dependency version bumps in Dockerfile by @garth-wells in #1631
Update Dockerfile to clang-12 by @garth-wells in #1632
Use radix sort in dofmap construction by @garth-wells in #1633
Fix llvm version for Numba by @garth-wells in #1634
Increase storage size of ARM Docker builder by @jhale in #1635
Change runner AMI to Ubuntu-based image by @jhale in #1636
Images now called latest-openmpi and latest-mpich by @jhale in #1637
Bump CI clang version by @garth-wells in #1638
Add explicit :latest tag by @jhale in #1640
Add :latest tag to Dockerfile instructions by @jhale in #1643
Remove duplicated code for ParMETIS and KaHIP and general partitioning improvements by @garth-wells in #1639
Reuse sort code in "Build dual graph" by @IgorBaratta in #1642
Various MPI improvements by @garth-wells in #1645
Fixes for the new Intel Compiler by @IgorBaratta in #1646
HHJ/Regge Biharmonic Integration Tests by @jhale in #1644
Add workflow_dispatch for Spack CI by @garth-wells in #1647
Modify Spack CI by @garth-wells in #1650
Add missing overloaded BBox collisions method by @nate-sime in #1629
Make checkout refs explicit by @jhale in #1654
Use GitHub checkout in more places by @jhale in #1656
Update Basix interface to allow variants by @mscroggs in #1651
Update Catch2 version by @garth-wells in #1657
Remove references to legacy Intel compiler by @garth-wells in #1658
Remove some legacy code for finding PETSc. by @garth-wells in #1659
Dockerfile updates by @garth-wells in #1660
Remove interpolation code by @mscroggs in #1661
Update name of CMake variable in message string (HDF5) by @garth-wells in #1663
Faster way of fetching tdim by @michalhabera in #1665
Bump Ubuntu base image to 21.04 by @garth-wells in #1664
LLVM 12 for Ubuntu 21.04 by @jhale in #1668
Try LLVM-9 by @jhale in #1669
Bump min CMake version to 3.16. Earlier versions are not tested. by @garth-wells in #1666
Only create entities and permutation info for facet integrals when needed by @mscroggs in #1672
Avoid computing mesh permutations when not required by @garth-wells in #1674
Update viz CI test by @garth-wells in #1678
Remove topology functions that shouldn't be used by @garth-wells in #1675
Revise HDF5 detection - use hd5-config.cmake when available by @garth-wells in #1677
Pin numpy to numba compatible version by @jorgensd in #1682
Update versioning by @chrisrichardson in #1686
Support detection of Basix library in Python tree by @garth-wells in #1690
CI updates for Basix build change by @garth-wells in #1691
Spack doc update on README.md by @garth-wells in #1679
Doc link fixes by @garth-wells in http...