diff --git a/docs/workshop_2024/hackathon.md b/docs/workshop_2024/hackathon.md new file mode 100644 index 0000000..9d2c38b --- /dev/null +++ b/docs/workshop_2024/hackathon.md @@ -0,0 +1,3 @@ +# Hackathon + +## Description diff --git a/docs/workshop_2024/schedule.md b/docs/workshop_2024/schedule.md new file mode 100644 index 0000000..7b67e9d --- /dev/null +++ b/docs/workshop_2024/schedule.md @@ -0,0 +1,60 @@ +# Programme + +## 24.9.2024 + +### Session 1: Status and application of the EnzymeML platform + +| Time | Talk | +|-------|--------------------------------------------------------------------------------------------------| +| 9:00 | **Jürgen Pleiss**:
Welcome and overview on EnzymeML activities | +| 9:30 | **Jan Range, Max Häussler, Torsten Giess**:
Demonstration of EnzymeML tools | +| 12:00 | _End of session 1 and lunch_ | + +### Session 2: Hackathon: managing your own data with EnzymeML tools + +| Time | Talk | +|-------|--------------------------------------------------------------------------------------------------| +| 13:30 | **Jan Range, Max Häussler, Torsten Giess & all participants**:
Read in, and analyze your own datasets | +| 17:00 | _End of session 2_ | +| 17:15 | _Excursion_ | +| 19:30 | _Dinner_ | + +## 25.9.2024 + +### Session 3: Acquisition of data and metadata + +| Time | Talk | +|-------|--------------------------------------------------------------------------------------------------| +| 9:00 | **Johann Rohwer**:
LabNexus: an open-source enzyme kinetics data automation web application | +| 9:45 | **Marilize Le Roes-Hill**:
Expanding the enzyme 'reactome' via high-throughput experimentation – is reproducibility an issue? | +| 10:30 | _Coffee break_ | +| 11:00 | **Nicole Jung**:
tba | +| 11:45 | **Katrin Rosenthal**:
Challenges and solutions for digital (un)structured data in biocatalysis | +| 12:30 | _End of session 3 and lunch_ | + +### Session 4: Data analysis, modelling, optimization, and design of experiment + +| Time | Talk | +|-------|--------------------------------------------------------------------------------------------------| +| 14:00 | **Zvjezdana Findrik**:
Modelling approach in the biocatalytic process optimization and design | +| 14:45 | **Andreas Bommarius**:
Biocatalysis in multiphase reactors | +| 15:30 | _Coffee break_ | +| 16:00 | **Jenny Andexer**:
tba | +| 16:45 | **Sebastian Höpfl**:
Optimal experimental design in biocatalysis - from Gaussian processes towards Bayesian statistics | +| 17:30 | _End of session 4_ | +| 19:30 | _Dinner_ | + +## 26.9.2024 + +### Session 5: Infrastructure: what comes next + +| Time | Talk | +|-------|--------------------------------------------------------------------------------------------------| +| 9:00 | **Carine Vergne-Vaxelaire**:
High throughput screening data on enzyme activity: a first proposal for user-friendly data integration into EnzymeML workflow | +| 9:45 | **Frank Bergmann**:
tba | +| 10:30 | _Coffee break_ | +| 11:00 | **Ulrike Wittig**:
Using EnzymeML to exchange and publish reaction kinetics data in SABIO-RK | +| 11:45 | **Carsten Kettner**:
Extending STRENDA DB light | +| 12:30 | _End of session 5 and lunch_ | + +### Session 6: Outlook and planning diff --git a/mkdocs.yml b/mkdocs.yml index 732e380..b720e4a 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -2,6 +2,9 @@ site_name: EnzymeML Training Course nav: - Home: index.md + - EnzymeML Workshop 2024: + - Programme: workshop_2024/schedule.md + - Hackathon: workshop_2024/hackathon.md - DIY: - Getting started: getting_started.md - Python basics and manipulation of data: load_and_manipulate.md