transformer.py

"""
DETR Transformer class.

Copy-paste from DETR implementation with modifications
"""


# standard library
import copy

from typing import Optional

# third party
import torch
import torch.nn.functional as F

from torch import nn, Tensor


class Transformer(nn.Module):
    def __init__(
        self,
        d_model,
        nhead=8,
        num_encoder_layers=6,
        num_decoder_layers=6,
        dim_feedforward=2048,
        dropout=0.1,
        activation="relu",
        normalize_before=False,
        return_intermediate_dec=False,
    ):
        super().__init__()

        encoder_layer = TransformerEncoderLayer(
            d_model, nhead, dim_feedforward, dropout, activation, normalize_before
        )
        encoder_norm = nn.LayerNorm(d_model) if normalize_before else None
        self.encoder = TransformerEncoder(
            encoder_layer, num_encoder_layers, encoder_norm
        )

        decoder_layer = TransformerDecoderLayer(
            d_model, nhead, dim_feedforward, dropout, activation, normalize_before
        )
        decoder_norm = nn.LayerNorm(d_model)
        self.decoder = TransformerDecoder(
            decoder_layer,
            num_decoder_layers,
            decoder_norm,
            return_intermediate=return_intermediate_dec,
        )

        self._reset_parameters()

        self.d_model = d_model
        self.nhead = nhead

    def _reset_parameters(self):
        for p in self.parameters():
            if p.dim() > 1:
                nn.init.xavier_uniform_(p)

    def forward(self, src, query_embed, pos_embed):
        # flatten NxSxE to SxNxE
        bs, seq_len, embed_dim = src.shape
        src = src.permute(1, 0, 2)
        pos_embed = pos_embed.permute(1, 0, 2)
        query_embed = query_embed.unsqueeze(1).repeat(1, bs, 1)

        tgt = torch.zeros_like(query_embed)
        memory = self.encoder(src, pos=pos_embed)
        # encoder
        hs = self.decoder(
            tgt,
            memory,
            pos=pos_embed,
            query_pos=query_embed,
        )
        return hs.transpose(0, 1)


class TransformerEncoder(nn.Module):
    def __init__(self, encoder_layer, num_layers, norm=None):
        super().__init__()
        self.layers = _get_clones(encoder_layer, num_layers)
        self.num_layers = num_layers
        self.norm = norm

    def forward(
        self,
        src,
        mask: Optional[Tensor] = None,
        src_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
    ):
        output = src

        for layer in self.layers:
            output = layer(
                output,
                src_mask=mask,
                src_key_padding_mask=src_key_padding_mask,
                pos=pos,
            )

        if self.norm is not None:
            output = self.norm(output)

        return output


class TransformerDecoder(nn.Module):
    def __init__(self, decoder_layer, num_layers, norm=None, return_intermediate=False):
        super().__init__()
        self.layers = _get_clones(decoder_layer, num_layers)
        self.num_layers = num_layers
        self.norm = norm
        self.return_intermediate = return_intermediate

    def forward(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
    ):
        output = tgt

        intermediate = []

        for layer in self.layers:
            output = layer(
                output,
                memory,
                tgt_mask=tgt_mask,
                memory_mask=memory_mask,
                tgt_key_padding_mask=tgt_key_padding_mask,
                memory_key_padding_mask=memory_key_padding_mask,
                pos=pos,
                query_pos=query_pos,
            )
            if self.return_intermediate:
                intermediate.append(self.norm(output))

        if self.norm is not None:
            output = self.norm(output)
            if self.return_intermediate:
                intermediate.pop()
                intermediate.append(output)

        if self.return_intermediate:
            return torch.stack(intermediate)

        return output


class TransformerEncoderLayer(nn.Module):
    def __init__(
        self,
        d_model,
        nhead,
        dim_feedforward=2048,
        dropout=0.1,
        activation="relu",
        normalize_before=False,
    ):
        super().__init__()
        self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
        # Implementation of Feedforward model
        self.linear1 = nn.Linear(d_model, dim_feedforward)
        self.dropout = nn.Dropout(dropout)
        self.linear2 = nn.Linear(dim_feedforward, d_model)

        self.norm1 = nn.LayerNorm(d_model)
        self.norm2 = nn.LayerNorm(d_model)
        self.dropout1 = nn.Dropout(dropout)
        self.dropout2 = nn.Dropout(dropout)

        self.activation = _get_activation_fn(activation)
        self.normalize_before = normalize_before

    def with_pos_embed(self, tensor, pos: Optional[Tensor]):
        return tensor if pos is None else tensor + pos

    def forward_post(
        self,
        src,
        src_mask: Optional[Tensor] = None,
        src_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
    ):
        q = k = self.with_pos_embed(src, pos)
        src2 = self.self_attn(
            q, k, value=src, attn_mask=src_mask, key_padding_mask=src_key_padding_mask
        )[0]
        src = src + self.dropout1(src2)
        src = self.norm1(src)
        src2 = self.linear2(self.dropout(self.activation(self.linear1(src))))
        src = src + self.dropout2(src2)
        src = self.norm2(src)
        return src

    def forward_pre(
        self,
        src,
        src_mask: Optional[Tensor] = None,
        src_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
    ):
        src2 = self.norm1(src)
        q = k = self.with_pos_embed(src2, pos)
        src2 = self.self_attn(
            q, k, value=src2, attn_mask=src_mask, key_padding_mask=src_key_padding_mask
        )[0]
        src = src + self.dropout1(src2)
        src2 = self.norm2(src)
        src2 = self.linear2(self.dropout(self.activation(self.linear1(src2))))
        src = src + self.dropout2(src2)
        return src

    def forward(
        self,
        src,
        src_mask: Optional[Tensor] = None,
        src_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
    ):
        if self.normalize_before:
            return self.forward_pre(src, src_mask, src_key_padding_mask, pos)
        return self.forward_post(src, src_mask, src_key_padding_mask, pos)


class TransformerDecoderLayer(nn.Module):
    def __init__(
        self,
        d_model,
        nhead,
        dim_feedforward=2048,
        dropout=0.1,
        activation="relu",
        normalize_before=False,
    ):
        super().__init__()
        self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
        self.multihead_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
        # Implementation of Feedforward model
        self.linear1 = nn.Linear(d_model, dim_feedforward)
        self.dropout = nn.Dropout(dropout)
        self.linear2 = nn.Linear(dim_feedforward, d_model)

        self.norm1 = nn.LayerNorm(d_model)
        self.norm2 = nn.LayerNorm(d_model)
        self.norm3 = nn.LayerNorm(d_model)
        self.dropout1 = nn.Dropout(dropout)
        self.dropout2 = nn.Dropout(dropout)
        self.dropout3 = nn.Dropout(dropout)

        self.activation = _get_activation_fn(activation)
        self.normalize_before = normalize_before

    def with_pos_embed(self, tensor, pos: Optional[Tensor]):
        return tensor if pos is None else tensor + pos

    def forward_post(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
    ):
        q = k = self.with_pos_embed(tgt, query_pos)
        tgt2 = self.self_attn(
            q, k, value=tgt, attn_mask=tgt_mask, key_padding_mask=tgt_key_padding_mask
        )[0]
        tgt = tgt + self.dropout1(tgt2)
        tgt = self.norm1(tgt)
        tgt2 = self.multihead_attn(
            query=self.with_pos_embed(tgt, query_pos),
            key=self.with_pos_embed(memory, pos),
            value=memory,
            attn_mask=memory_mask,
            key_padding_mask=memory_key_padding_mask,
        )[0]
        tgt = tgt + self.dropout2(tgt2)
        tgt = self.norm2(tgt)
        tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt))))
        tgt = tgt + self.dropout3(tgt2)
        tgt = self.norm3(tgt)
        return tgt

    def forward_pre(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
    ):
        tgt2 = self.norm1(tgt)
        q = k = self.with_pos_embed(tgt2, query_pos)
        tgt2 = self.self_attn(
            q, k, value=tgt2, attn_mask=tgt_mask, key_padding_mask=tgt_key_padding_mask
        )[0]
        tgt = tgt + self.dropout1(tgt2)
        tgt2 = self.norm2(tgt)
        tgt2 = self.multihead_attn(
            query=self.with_pos_embed(tgt2, query_pos),
            key=self.with_pos_embed(memory, pos),
            value=memory,
            attn_mask=memory_mask,
            key_padding_mask=memory_key_padding_mask,
        )[0]
        tgt = tgt + self.dropout2(tgt2)
        tgt2 = self.norm3(tgt)
        tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt2))))
        tgt = tgt + self.dropout3(tgt2)
        return tgt

    def forward(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
    ):
        if self.normalize_before:
            return self.forward_pre(
                tgt,
                memory,
                tgt_mask,
                memory_mask,
                tgt_key_padding_mask,
                memory_key_padding_mask,
                pos,
                query_pos,
            )
        return self.forward_post(
            tgt,
            memory,
            tgt_mask,
            memory_mask,
            tgt_key_padding_mask,
            memory_key_padding_mask,
            pos,
            query_pos,
        )


def _get_clones(module, N):
    return nn.ModuleList([copy.deepcopy(module) for i in range(N)])


def _get_activation_fn(activation):
    """Return an activation function given a string"""
    if activation == "relu":
        return F.relu
    if activation == "gelu":
        return F.gelu
    if activation == "glu":
        return F.glu
    raise RuntimeError(f"activation should be relu/gelu, not {activation}.")


if __name__ == "__main__":
    n, s, e = 10, 100, 5
    transformer = Transformer(d_model=5, nhead=5)
    x = torch.rand(n, s, e)
    query_embedd = torch.nn.Embedding(10, 5)
    pos = torch.rand(n, s, e)
    hs = transformer(x, query_embedd.weight, pos)
    print(hs.shape)