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This repository has been archived by the owner on Feb 28, 2023. It is now read-only.
Daniel Zerbino edited this page May 11, 2018
·
4 revisions
In lib/postgap/Reg.py add an adaptor object at the second to last line, following the model below:
class My_Regulatory_Adaptor_Class(Reg_source):
display_name = "My new source of Regulatory Data"
def run(self, ld_snps, tissues):
"""
Extract Regulome score at snps of interest
Args:
* [ SNP ]
* [ string ]
Returntype: [ Regulatory_Evidence ]
"""
# Connect to DB, filter, etc...
return [Regulatory_Evidence(
snp = XXX, # SNP object, from the ld_snps list
source = self.display_name,
score = XXX, # Float, between 0 and 1
study XXX, # String
tissue = XXX, # String
info = XXX # Hash
)] #This is a list, you can have as many as you want