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Running POSTGAP on large number of SNPs #185

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mohammedmsk opened this issue Nov 15, 2022 · 0 comments

mohammedmsk commented Nov 15, 2022

Hello Team,

I am trying to run POSTGAP on my GWAS summary statistics which has about 20,000 SNPs after some p-value thresholding.

The issue is that POSTGAP is extremely slow and is not finishing even after running it for days.

Could you please elaborate how to best run POSTGAP on GWAS summary statistics in an efficient way?

Many sequential REST API calls will obviously take a lot of time, is there a way to bypass these calls?

Thanks,
-Mohammed.

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