From 3bf7adfbd6bb747ce85cd6a8d8ae55e46aef6186 Mon Sep 17 00:00:00 2001
From: brunocontrerasmoreira <brunocontreras@yahoo.co.uk>
Date: Thu, 11 Jan 2024 12:25:30 +0000
Subject: [PATCH] sub _parseCIGARfeature handles correctly 1bp CS-type SNPs
 when computing overlap with optional query coord

---
 pangenes/_collinear_genes.pl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pangenes/_collinear_genes.pl b/pangenes/_collinear_genes.pl
index b68d68f49..3978ebf92 100755
--- a/pangenes/_collinear_genes.pl
+++ b/pangenes/_collinear_genes.pl
@@ -1515,7 +1515,7 @@ sub query2ref_coords {
         }
     } 
 
-    close(BED); 
+    close(BED);  
 
     # printed unsorted BED records
     open( OUTBED, ">", $outfile )