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fields-map.json
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{
"assembly_stats": {
"contig_n50": "contig_n50",
"total_genome_length": "total_genome_length",
"total_coding_sequence_length": "total_coding_sequence_length",
"total_gap_length": "total_gap_length",
"spanned_gaps": "spanned_gaps",
"chromosomes": "chromosomes",
"toplevel_sequences": "toplevel_sequences",
"component_sequences": "component_sequences",
"gc_percentage": "gc_percentage"
},
"coding_stats": {
"coding_genes": "coding_genes",
"average_genomic_span": "average_genomic_span",
"average_sequence_length": "average_sequence_length",
"average_cds_length": "average_cds_length",
"shortest_gene_length": "shortest_gene_length",
"longest_gene_length": "longest_gene_length",
"total_transcripts": "total_transcripts",
"coding_transcripts": "coding_transcripts",
"transcripts_per_gene": "transcripts_per_gene",
"coding_transcripts_per_gene": "coding_transcripts_per_gene",
"total_exons": "total_exons",
"total_coding_exons": "total_coding_exons",
"average_exon_length": "average_exon_length",
"average_coding_exon_length": "average_coding_exon_length",
"average_exons_per_transcript": "average_exons_per_transcript",
"average_coding_exons_per_coding_transcript": "average_coding_exons_per_coding_transcript",
"total_introns": "total_introns",
"average_intron_length": "average_intron_length"
},
"non_coding_stats": {
"non_coding_genes": "nc_non_coding_genes",
"small_non_coding_genes": "nc_small_non_coding_genes",
"long_non_coding_genes": "nc_long_non_coding_genes",
"misc_non_coding_genes": "nc_misc_non_coding_genes",
"average_genomic_span": "nc_average_genomic_span",
"average_sequence_length": "nc_average_sequence_length",
"shortest_gene_length": "nc_shortest_gene_length",
"longest_gene_length": "nc_longest_gene_length",
"total_transcripts": "nc_total_transcripts",
"transcripts_per_gene": "nc_transcripts_per_gene",
"total_exons": "nc_total_exons",
"average_exon_length": "nc_average_exon_length",
"average_exons_per_transcript": "nc_average_exons_per_transcript",
"total_introns": "nc_total_introns",
"average_intron_length": "nc_average_intron_length"
},
"pseudogene_stats": {
"pseudogenes": "ps_pseudogenes",
"average_genomic_span": "ps_average_genomic_span",
"average_sequence_length": "ps_average_sequence_length",
"shortest_gene_length": "ps_shortest_gene_length",
"longest_gene_length": "ps_longest_gene_length",
"total_transcripts": "ps_total_transcripts",
"transcripts_per_gene": "ps_transcripts_per_gene",
"total_exons": "ps_total_exons",
"average_exon_length": "ps_average_exon_length",
"average_exons_per_transcript": "ps_average_exons_per_transcript",
"total_introns": "ps_total_introns",
"average_intron_length": "ps_average_intron_length"
},
"homology_stats": {
"coverage": "homology_coverage",
"coverage_explanation": "TODO: DOES NOT EXIST IN PRODUCTION DATABASE"
},
"variation_stats": {
"short_variants": "short_variants",
"structural_variants": "structural_variants",
"short_variants_with_phenotype_assertions": "short_variants_with_phenotype_assertions",
"short_variants_with_publications": "short_variants_with_publications",
"short_variants_frequency_studies": "short_variants_frequency_studies",
"structural_variants_with_phenotype_assertions": "structural_variants_with_phenotype_assertions"
},
"regulation_stats": {
"enhancers": "enhancers",
"promoters": "promoters"
}
}