.gitignore

# project specific
processed/
results/
manuscript/
data/
lib/
.ipynb_checkpoints/

# ignore test files
.tox
_version.py
pytest.log
.coverage*

# Build-related stuff
build/
dist/
*.egg-info


# data files
*.mcd
*.h5
*.h5ad
*.gmt
*.tiff
*.tif
*.mcd
*.npz
# *.csv
*.pq

# toy/experimental files
*.txt
*.tsv
*.pkl
*.xlsx
*.pickle
*.svg
*.png
*.jpg
*.jpeg
*.pdf

# ignore mypy
.mypy*

# ignore eggs
.eggs/

# ignore built docs
doc/build/*

# generic ignore list:
*.lst

# Compiled source
*.com
*.class
*.dll
*.exe
*.o
*.so
*.pyc

# Packages
# it's better to unpack these files and commit the raw source
# git has its own built in compression methods
*.7z
*.dmg
*.gz
*.iso
*.jar
*.rar
*.tar
*.zip

# Logs and databases
*.log
*.sql
*.sqlite

# OS generated files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Sublime files
*.sublime-*

# Gedit temporary files
*~

# libreoffice lock files:
.~lock*

# IDE-specific items
.idea/

# pytest-related
.cache/
.coverage*
coverage.xml

# Reserved files for comparison
*RESERVE*

# Self Note
README_future_plans.md


data/
figures/

# ipynb checkpoints
*/.ipynb_checkpoints/

# pycache files
gatdu/__pycache__