abbreviations.tex

\newacronym{ad}{AD}{Atopic Dermatitis}
\newacronym{anosim}{ANOSIM}{Analysis of Similarities}
\newacronym{auc}{AUC}{Area Under the Curve}
\newacronym{bcs}{BCS}{Body Condition Scores}
\newacronym{biom}{BIOM}{Biological Observation Matrix}
\newacronym{bmi}{BMI}{Body Mass Index}
\newacronym{ca}{CA}{Correspondence Analysis}
\newacronym{ccd}{CCD}{Colonic Crohn's Disease}
\newacronym{cc}{CC}{Collagenous Colitis}
\newacronym{cdai}{CDAI}{Clinical Disease Activity Index}
\newacronym{cdi}{CDI}{\textit{Clostridium difficile} infection}
\newacronym{cd}{CD}{Crohn's Disease}
\newacronym{cgr}{CGR}{Cardiac Glycoside Reductase}
\newacronym{cibdai}{CIBDAI}{Clinical Canine IBD Activity Index}
\newacronym{dexa}{DEXA}{dual-energy X-ray Absorptiometry}
\newacronym{ecg}{ECG}{Electrocardiograph}
\newacronym{emp}{EMP}{Earth Microbiome Project}
\newacronym{ena}{ENA}{European Nucleotide Archive}
\newacronym{fmt}{FMT}{Fecal Microbiota Transplant}
\newacronym{gi}{GI}{Gastro Intestinal}
\newacronym{glm}{GLM}{Generalized Linear Mixed effects model}
\newacronym{gls}{GLS}{Genetic Load Scores}
\newacronym{gnps}{GNPS}{Global Natural Products Social Molecular Networking}
\newacronym{hc}{HC}{Healthy Controls}
\newacronym{hdf5}{HDF5}{Hierarchical Data Format version 5}
\newacronym{hgt}{HGT}{Horizontal Gene Transfer}
\newacronym{hmp}{HMP}{Human Microbiome Project}
\newacronym{hp}{HP}{Healthy Plane}
\newacronym{html5}{HTML5}{HyperText Markup Language, version 5}
\newacronym{ibd}{IBD}{Inflammatory Bowel Disease}
\newacronym{icd}{ICD}{Ileal CD}
\newacronym{icomm}{ICoMM}{International Census of Marine Microbes}
\newacronym{iqr}{IQR}{InterQuantile Range}
\newacronym{irb}{IRB}{Institutional Review Board}
\newacronym{json}{JSON}{JavaScript Object Notation}
\newacronym{kegg}{KEGG}{Kyoto Encyclopedia of Genes and Genomes}
\newacronym{king}{KiNG}{Kinemage, Next Generation}
\newacronym{lc}{LC}{Lymphocytic Colitis}
\newacronym{md}{MD}{Microbial Dysbiosis}
\newacronym{mixs}{MIxS}{Minimum information about any (x) sequence}
\newacronym{mp}{MP}{Moving Pictures}
\newacronym{ms}{MS}{Mass Spectrometry}
\newacronym{nmds}{NMDS}{Non-metric Multidimensional Scaling}
\newacronym{nsaid}{NSAID}{Non-steroidal anti-inflammatory drug}
\newacronym{numpy}{NumPy}{Numerical Python}
\newacronym{otu}{OTU}{Operational Taxonomic Unit}
\newacronym{pca}{PCA}{Principal Component Analysis}
\newacronym{pcoa}{PCoA}{Principal Coordinates Analysis}
\newacronym{pcr}{PCR}{Polymerase Chain Reaction}
\newacronym{permanova}{PERMANOVA}{Permutational Multivariate Analysis of Variance}
\newacronym{pycogent}{PyCogent}{Comparative and Genomic Toolkit}
\newacronym{qiime}{QIIME}{Quantitative Insights into Microbial Ecology}
\newacronym{rcdi}{R-CDI}{recurrent \gls{cdi}}
\newacronym{roc}{ROC}{Receiver Operating Characteristic}
\newacronym{shime}{SHIME}{Simulator of the Human Intestinal Microbial Ecosystem}
\newacronym{smp}{SMP}{Student Microbiome Project}
\newacronym{snp}{SNP}{Single Nucleotide Polymorphism}
\newacronym{sra}{SRA}{Sequence Read Archive}
\newacronym{t2d}{T2D}{Type 2 Diabetes}
\newacronym{ucl}{UCL}{Standard Upper Control Limit}
\newacronym{uc}{UC}{Ulcerative Colitis}
\newacronym{webgl}{WebGL}{Web Graphics Library}
\newacronym{wsava}{WSAVA}{World Small Animal Veterinary Association}