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sequences display from 1 not 0 ? #77

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taoym470 opened this issue May 6, 2023 · 1 comment

taoym470 commented May 6, 2023

Hello!

So many thanks for this wonderful tool! It would be much better if the sequences display from 1 not 0.

Member

Zulko commented May 8, 2023

This is because it uses Biopython indexing (from 0) by default. For genbank-type indexing (starting at 1) this should work:

my_graphic_record.plots_indexing == 'genbank'
my_graphic_record.plot(...)

See the docs:

    plots_indexing
      Indicates which standard to use to show nucleotide indices in the plots.
      If 'biopython', the standard python indexing is used (starting at 0).
      If 'genbank', the indexing follows the Genbank standard (starting at 1).

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