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Non-parametric bootstraps #116

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donovan-h-parks opened this issue Apr 17, 2019 · 0 comments
Open

Non-parametric bootstraps #116

donovan-h-parks opened this issue Apr 17, 2019 · 0 comments
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enhancement Proposed feature or change to GTDB-Tk.

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@donovan-h-parks
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It would be good to have a "bootstrap" function to run after the de novo workflow to allow generation of bootstrapped trees. The code for this already exists in the GenomeTreeTk, but it would be good to have this in the GTDB-Tk itself. Also, we should change the default tree to be inferred WITHOUT the GAMMA model since we are moving away from this. A "--gamma" flag should then be added to let people use this model is desired.
@donovan-h-parks donovan-h-parks added the enhancement Proposed feature or change to GTDB-Tk. label Apr 17, 2019
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enhancement Proposed feature or change to GTDB-Tk.
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