From 3c445f4df76ca901d8c732a152fdaaaf3b057ec0 Mon Sep 17 00:00:00 2001
From: SimonDMurray <simondonaldmurray@gmail.com>
Date: Tue, 19 Mar 2024 11:36:06 +0000
Subject: [PATCH] updated test to provide full path to snapshot file

---
 tests/modules/local/vsearch_derep.nf.test      | 4 ++--
 tests/modules/local/vsearch_derep.nf.test.snap | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/tests/modules/local/vsearch_derep.nf.test b/tests/modules/local/vsearch_derep.nf.test
index 8d4e31a..b765919 100755
--- a/tests/modules/local/vsearch_derep.nf.test
+++ b/tests/modules/local/vsearch_derep.nf.test
@@ -54,8 +54,8 @@ nextflow_process {
             assert process.out.versions.get(0) ==~ ".*/versions.yml"
             //Check the md5sums of the fasta and clustering
             assert snapshot(
-              path("${params.outdir}/vsearch/derep/ERR2537816.derep.fasta"),
-              path("${params.outdir}/vsearch/derep/ERR2537816.derep.uc")
+              path("${launchDir}/${params.outdir}/vsearch/derep/ERR2537816.derep.fasta"),
+              path("${launchDir}/${params.outdir}/vsearch/derep/ERR2537816.derep.uc")
             ).match("vsearch_dereplicate") 
         }
     }
diff --git a/tests/modules/local/vsearch_derep.nf.test.snap b/tests/modules/local/vsearch_derep.nf.test.snap
index b12288a..008bced 100644
--- a/tests/modules/local/vsearch_derep.nf.test.snap
+++ b/tests/modules/local/vsearch_derep.nf.test.snap
@@ -1,13 +1,13 @@
 {
     "vsearch_dereplicate": {
         "content": [
-            "ERR2537816.derep.fasta:md5,04090476d9a902ecd8966f67dffd4621",
+            "ERR2537816.derep.fasta:md5,664eaf12d13a13d32b8caffcb031c48d",
             "ERR2537816.derep.uc:md5,35265131266966e6eefe2099725e127b"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "23.10.1"
         },
-        "timestamp": "2024-03-19T11:17:11.405323"
+        "timestamp": "2024-03-19T11:34:47.714992"
     }
 }
\ No newline at end of file