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environment.yml
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name: graphkernel
channels:
- pytorch
- pyg
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- abseil-cpp=20230802.0=h6a678d5_2
- aiohttp=3.9.5=py38h5eee18b_0
- aiosignal=1.2.0=pyhd3eb1b0_0
- asttokens=2.0.5=pyhd3eb1b0_0
- async-timeout=4.0.3=py38h06a4308_0
- atk-1.0=2.36.0=ha1a6a79_0
- attrs=23.1.0=py38h06a4308_0
- backcall=0.2.0=pyhd3eb1b0_0
- blas=1.0=mkl
- blinker=1.6.2=py38h06a4308_0
- boost-cpp=1.82.0=hdb19cb5_2
- bottleneck=1.3.7=py38ha9d4c09_0
- brotli=1.0.9=h5eee18b_8
- brotli-bin=1.0.9=h5eee18b_8
- brotli-python=1.0.9=py38h6a678d5_8
- bzip2=1.0.8=h5eee18b_6
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2024.7.2=h06a4308_0
- cairo=1.16.0=hb05425b_5
- certifi=2024.8.30=py38h06a4308_0
- cffi=1.16.0=py38h5eee18b_1
- click=8.1.7=py38h06a4308_0
- comm=0.2.1=py38h06a4308_0
- contourpy=1.0.5=py38hdb19cb5_0
- cryptography=42.0.5=py38hdda0065_1
- cudatoolkit=11.3.1=h2bc3f7f_2
- cycler=0.11.0=pyhd3eb1b0_0
- cyrus-sasl=2.1.28=h52b45da_1
- dbus=1.13.18=hb2f20db_0
- debugpy=1.6.7=py38h6a678d5_0
- decorator=5.1.1=pyhd3eb1b0_0
- executing=0.8.3=pyhd3eb1b0_0
- expat=2.6.2=h6a678d5_0
- ffmpeg=4.2.2=h20bf706_0
- filelock=3.13.1=py38h06a4308_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.14.1=h4c34cd2_2
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- fonttools=4.51.0=py38h5eee18b_0
- freetype=2.12.1=h4a9f257_0
- fribidi=1.0.10=h7b6447c_0
- frozenlist=1.4.0=py38h5eee18b_0
- gdk-pixbuf=2.42.10=h5eee18b_0
- giflib=5.2.1=h5eee18b_3
- glib=2.78.4=h6a678d5_0
- glib-tools=2.78.4=h6a678d5_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py38heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- gobject-introspection=1.78.1=py38hd56c82f_0
- graphite2=1.3.14=h295c915_1
- graphviz=2.50.0=h1b29801_1
- grpc-cpp=1.48.2=he1ff14a_4
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- gtest=1.14.0=hdb19cb5_1
- gtk2=2.24.33=h73c1081_2
- gts=0.7.6=hb67d8dd_3
- harfbuzz=4.3.0=hf52aaf7_2
- huggingface_hub=0.24.6=py38h06a4308_0
- icu=73.1=h6a678d5_0
- idna=3.7=py38h06a4308_0
- importlib_metadata=7.0.1=hd3eb1b0_0
- importlib_resources=6.1.1=py38h06a4308_1
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=6.26.0=pyhf8b6a83_0
- ipython=8.12.2=py38h06a4308_0
- jedi=0.18.1=py38h06a4308_1
- jinja2=3.1.4=py38h06a4308_0
- joblib=1.4.0=py38h06a4308_0
- jpeg=9e=h5eee18b_1
- jupyter_client=8.6.0=py38h06a4308_0
- jupyter_core=5.5.0=py38h06a4308_0
- kiwisolver=1.4.4=py38h6a678d5_0
- krb5=1.20.1=h143b758_1
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libboost=1.82.0=h109eef0_2
- libbrotlicommon=1.0.9=h5eee18b_8
- libbrotlidec=1.0.9=h5eee18b_8
- libbrotlienc=1.0.9=h5eee18b_8
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcups=2.4.2=h2d74bed_1
- libcurl=8.7.1=h251f7ec_0
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=h7f8727e_1
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libgd=2.3.3=h695aa2c_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libglib=2.78.4=hdc74915_0
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h5eee18b_3
- libidn2=2.3.4=h5eee18b_0
- libllvm14=14.0.6=hdb19cb5_3
- libnghttp2=1.57.0=h2d74bed_0
- libopus=1.3.1=h7b6447c_0
- libpng=1.6.39=h5eee18b_0
- libpq=12.17=hdbd6064_0
- libprotobuf=3.20.3=he621ea3_0
- librsvg=2.54.4=h36cc946_3
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.11.0=h251f7ec_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libtool=2.4.6=h6a678d5_1009
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libuv=1.44.2=h5eee18b_0
- libvpx=1.7.0=h439df22_0
- libwebp=1.3.2=h11a3e52_0
- libwebp-base=1.3.2=h5eee18b_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=h5eee18b_1
- libxml2=2.10.4=hfdd30dd_2
- lz4-c=1.9.4=h6a678d5_1
- markupsafe=2.1.3=py38h5eee18b_0
- matplotlib=3.7.2=py38h06a4308_0
- matplotlib-base=3.7.2=py38h1128e8f_0
- matplotlib-inline=0.1.6=py38h06a4308_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h7f8727e_0
- mkl_fft=1.3.1=py38hd3c417c_0
- mkl_random=1.2.2=py38h51133e4_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py38h06a4308_0
- multidict=6.0.4=py38h5eee18b_0
- mysql=5.7.24=h721c034_2
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.6.0=py38h06a4308_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py38h06a4308_0
- ninja=1.10.2=h06a4308_5
- ninja-base=1.10.2=hd09550d_5
- nspr=4.35=h6a678d5_0
- nss=3.89.1=h6a678d5_0
- numexpr=2.8.4=py38he184ba9_0
- numpy=1.23.5=py38h14f4228_0
- numpy-base=1.23.5=py38h31eccc5_0
- oauthlib=3.2.2=py38h06a4308_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=3.0.15=h5eee18b_0
- packaging=23.2=py38h06a4308_0
- pango=1.50.7=h05da053_0
- parso=0.8.3=pyhd3eb1b0_0
- pcre2=10.42=hebb0a14_1
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=10.3.0=py38h5eee18b_0
- pip=24.0=py38h06a4308_0
- pixman=0.40.0=h7f8727e_1
- platformdirs=3.10.0=py38h06a4308_0
- plotly=5.9.0=py38h06a4308_0
- ply=3.11=py38_0
- pooch=1.7.0=py38h06a4308_0
- poppler=22.12.0=h9614445_3
- poppler-data=0.4.11=h06a4308_1
- prompt-toolkit=3.0.43=py38h06a4308_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- pyg=2.1.0=py38_torch_1.11.0_cu113
- pygments=2.15.1=py38h06a4308_1
- pygraphviz=1.9=py38h5eee18b_1
- pyjwt=2.8.0=py38h06a4308_0
- pyopenssl=24.0.0=py38h06a4308_0
- pyparsing=3.0.9=py38h06a4308_0
- pyqt=5.15.10=py38h6a678d5_0
- pyqt5-sip=12.13.0=py38h5eee18b_0
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.18=h955ad1f_0
- python-dateutil=2.9.0post0=py38h06a4308_2
- python-tzdata=2023.3=pyhd3eb1b0_0
- pytorch=1.11.0=py3.8_cuda11.3_cudnn8.2.0_0
- pytorch-cluster=1.6.0=py38_torch_1.11.0_cu113
- pytorch-mutex=1.0=cuda
- pytorch-scatter=2.0.9=py38_torch_1.11.0_cu113
- pytorch-sparse=0.6.15=py38_torch_1.11.0_cu113
- pytz=2024.1=py38h06a4308_0
- pyyaml=6.0.1=py38h5eee18b_0
- pyzmq=25.1.2=py38h6a678d5_0
- qt-main=5.15.2=h53bd1ea_10
- re2=2022.04.01=h295c915_0
- readline=8.2=h5eee18b_0
- requests=2.32.2=py38h06a4308_0
- scikit-learn=1.3.0=py38h1128e8f_1
- seaborn=0.12.2=py38h06a4308_0
- setuptools=69.5.1=py38h06a4308_0
- sip=6.7.12=py38h6a678d5_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.45.3=h5eee18b_0
- stack_data=0.2.0=pyhd3eb1b0_0
- sympy=1.11.1=py38h06a4308_0
- tenacity=8.2.2=py38h06a4308_0
- tensorboard=2.8.0=py38h06a4308_0
- tensorboard-data-server=0.6.1=py38h52d8a92_0
- tensorboard-plugin-wit=1.8.1=py38h06a4308_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.14=h39e8969_0
- tomli=2.0.1=py38h06a4308_0
- torchaudio=0.11.0=py38_cu113
- torchvision=0.12.0=py38_cu113
- tornado=6.3.3=py38h5eee18b_0
- traitlets=5.7.1=py38h06a4308_0
- typing-extensions=4.11.0=py38h06a4308_0
- typing_extensions=4.11.0=py38h06a4308_0
- unicodedata2=15.1.0=py38h5eee18b_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- wheel=0.43.0=py38h06a4308_0
- x264=1!157.20191217=h7b6447c_0
- xz=5.4.6=h5eee18b_1
- yaml=0.2.5=h7b6447c_0
- yarl=1.9.3=py38h5eee18b_0
- zeromq=4.3.5=h6a678d5_0
- zipp=3.17.0=py38h06a4308_0
- zlib=1.2.13=h5eee18b_1
- zstd=1.5.5=hc292b87_2
- pip:
- absl-py==2.0.0
- accelerate==0.25.0
- beautifulsoup4==4.12.3
- cachetools==5.3.1
- chardet==5.2.0
- charset-normalizer==3.3.0
- cython==3.0.7
- datasets==2.15.0
- dill==0.3.7
- dtw==1.4.0
- fastdtw==0.3.4
- fsspec==2023.10.0
- future==0.18.3
- gdown==5.1.0
- gensim==4.0.1
- glog==0.3.1
- google-auth==2.23.2
- google-auth-oauthlib==0.4.6
- grakel==0.1.10
- grpcio==1.59.0
- hdf5storage==0.1.19
- huggingface-hub==0.19.4
- igraph==0.10.8
- importlib-metadata==6.8.0
- itchat==1.3.10
- jieba==0.42.1
- levenshtein==0.23.0
- markdown==3.5
- multiprocess==0.70.15
- objprint==0.2.3
- pandas==1.2.4
- pot==0.9.2
- protobuf==4.24.4
- psutil==5.9.6
- pyarrow==14.0.1
- pyarrow-hotfix==0.6
- pyasn1==0.5.0
- pyasn1-modules==0.3.0
- pynauty==2.8.6
- pypng==0.20220715.0
- pyqrcode==1.2.1
- python-gflags==3.1.2
- python-levenshtein==0.23.0
- rapidfuzz==3.5.2
- rdkit==2023.9.4
- regex==2023.10.3
- requests-oauthlib==1.3.1
- rsa==4.9
- safetensors==0.4.1
- scipy==1.8.0
- sentencepiece==0.1.99
- smart-open==6.4.0
- soupsieve==2.5
- texttable==1.7.0
- tokenizers==0.15.0
- tqdm==4.63.0
- transformers==4.35.2
- urllib3==2.0.6
- viztracer==0.16.1
- werkzeug==3.0.0
- xxhash==3.4.1
prefix: /home/shuhao/anaconda3/envs/graphkernel