Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

List non-conformant concept domains #67

Open
MaximMoinat opened this issue Sep 24, 2021 · 0 comments
Open

List non-conformant concept domains #67

MaximMoinat opened this issue Sep 24, 2021 · 0 comments
Labels
enhancement New feature or request

Comments

@MaximMoinat
Copy link
Collaborator

MaximMoinat commented Sep 24, 2021

An important check in DataQualityDashboard is the fkDomain, which checks for the number of concepts in the wrong domain (i.e. Observation concepts in the Procedure table). The Cdm Inspection report does not contain any output on this.

We can make a section about domain checks. Two ideas for tables included in this section:

Records per table, per concept domain

Table \ Concept Domain Condition Procedure Drug Device Measurement Observation Unit
Condition occurrence 12346 1687
Procedure occurrence 58 4561
Drug exposure 78123 1234
Device exposure 875
Measurement 56123 5874
Observation 957 456 89561
Obsevation-Unit 87
Measurement-Unit 61234
Condition era 9988 852
Drug era 55789 321

TOP x concepts with a domain mismatch

ROW_NUM CONCEPT_ID CONCEPT_NAME TABLE CONCEPT DOMAIN #RECORDS #SUBJECTS
1
2
...
@MaximMoinat MaximMoinat added the enhancement New feature or request label Sep 24, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant