From a5e0bb9b66ba090e0e34d7b2ccedc05f7d3cf284 Mon Sep 17 00:00:00 2001 From: costero-e Date: Tue, 22 Oct 2024 17:11:00 +0200 Subject: [PATCH] adding defaults conf for ri-tools --- beacon/permissions/datasets/public_datasets.yml | 3 ++- ri-tools/conf/conf.py | 6 +++--- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/beacon/permissions/datasets/public_datasets.yml b/beacon/permissions/datasets/public_datasets.yml index 1e036a0..8d2520d 100644 --- a/beacon/permissions/datasets/public_datasets.yml +++ b/beacon/permissions/datasets/public_datasets.yml @@ -2,4 +2,5 @@ public_datasets: - CINECA_synthetic_cohort_EUROPE_UK1 - CINECA_dataset - rd-connect_dataset -- coadread_tcga_pan_can_atlas_2018 \ No newline at end of file +- coadread_tcga_pan_can_atlas_2018 +- COVID_pop11_fin_2 \ No newline at end of file diff --git a/ri-tools/conf/conf.py b/ri-tools/conf/conf.py index 0ab621c..9ea7631 100644 --- a/ri-tools/conf/conf.py +++ b/ri-tools/conf/conf.py @@ -4,9 +4,9 @@ #### VCF Conversion config parameters #### allele_frequency=1 # introduce float number, leave 1 if you want to convert all the variants -reference_genome='GRCh38' # Choose one between NCBI36, GRCh37, GRCh38 -datasetId='coadread_tcga_pan_can_atlas_2018' -case_level_data=True +reference_genome='GRCh37' # Choose one between NCBI36, GRCh37, GRCh38 +datasetId='COVID_pop11_fin_2' +case_level_data=False ### MongoDB parameters ### database_host = 'mongo'