22.06

Dependencies

AMReX: 22.06
PICSAR (development, incl. QED): 2becfe0665590063fdfca10abaa05c4c1bd3ec22
picmistandard: release 0.0.19
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 22.05.. --format='- %s'

• Release 22.06 (#3161)
• Vay Deposition: Add Cumulative Sums (#2958)
• Doc: adding few more references on numerical algorithms (#3158)
• Fix: WarnManager (#3159)
• Move warning logger in ablastr (#3154)
• Change Default for psatd.current_correction (#3092)
• Fix: ABLASTR rm MPIInitHelpers (#3156)
• Clean-up in python wrappers to access particle data (#2531)
• Crusher: Update Modules (#3152)
• Boundary scraping diagnostic (#3064)
• Acknowledge us: update DOIs (#3150)
• AMReX no-MPI Gather Fixed (#3149)
• Add 3D tests for proton boron fusion (#2450)
• Docs: Science Highlights (#3139)
• AMReX: Weekly Update (#3147)
• Move MsgLogger to ablastr (#3148)
• Use Utils::TextMsg::Err and WARPX_ALWAYS_ASSERT_WITH_MESSAGE in more files (#3117)
• move serialization to ablastr (#3145)
• Remove Extraneous WARPX_DIM_RZ in Gaussian Laser Init (#3144)
• Docs: Improve collision_name>.species (#3143)
• Write Inputs to warpx_used_inputs (#3132)
• Fix: Install ABLASTR (#3141)
• SpectralFieldDataRZ: Missing Utils Include (#3140)
• Fix: Field Probe no-MPI Gather (#3134)
• PML.cpp: missing util include (#3138)
• Reactivate Multi-J RZ PSATD Checksums (#2459)
• Test Filter: Include Python Langmuir (#3129)
• Specify particle precision (#3065)
• Simplify the function computePhi (#3026)
• CMake Pip: Unique Custom Targets (#3116)
• Docs: New Perlmutter Default Env, Microarch (#3127)
• Fold Python tests into their corresponding base configurations, to better exploit ccache (#3107)
• Add new class NamedComponentParticleContainer (#3100)
• [pre-commit.ci] pre-commit autoupdate (#3128)
• AMReX/PICSAR: Weekly Update (#3126)
• remove unused enum (#3124)
• use fwd declaration for WarpXFaceInfoBox (#3125)
• fix unnecessary double promotions (#3120)
• Add do_average option to the particle fields diagnostic (#3067)
• Clarify error messages when parsing diagnostics input (#3122)
• ABLASTR: localIDtoGlobal (#3115)
• Add workaround for Libfabric bug on Crusher to job script. (#3114)
• Lassen (LLNL): ADIOS2, BLAS++ & LAPACK++ (#3071)
• Avoid resizing ParticleBoundaryBuffer allocation to total particle count (#3068)
• Use uniform error message formatting in more source files (#2964)
• [pre-commit.ci] pre-commit autoupdate (#3113)
• AMReX/PICSAR: Weekly Update (#3112)
• Add Headers to Input File Written by PICMI (#3093)
• CI: HIP with https (#3111)
• Stricter Tolerance for 3D Langmuir Tests (#3097)
• Add STL files support in pywarpx (#3089)
• Fix Laser Injection in RZ (#3104)
• fix bug (#3110)
• Fix Breaking Pip 22.1 Logic (#3106)
• Fix Mirrors for RZ (NullifyMF) (#3101)
• Doc: Improve Doxygen Links (#3099)
• Fix Wrong Abort Message for PSATD w/ Time Averaging (#3098)
• Use queryWithParser to Parse v_particle_pml (#3096)
• Use uniform error message formatting for all the amrex::Abort() calls in WarpX.cpp (#2952)
• Apply shift for zmax>0 in old BTD (#3094)
• Add a python script to generate timestep duration plots (#3036)
• Fix miscellaneous issues found with clang tidy (#3083)
• AMReX: Weekly Update (#3095)
• Apply shift in BTD for zmax different than 0 (#3091)
• Fix openPMD RZ with load-balancing (#3084)
• Nuclear fusion: remove underflow warning in single precision (#3058)
• Close #3077 Fix RZ openPMD output with MR (#3082)
• ABLASTR: -fPIC Control (#3081)
• Add velocity in pml as an input in function alpha (#3070)

22.05

Dependencies

AMReX: 22.05
PICSAR (development, incl. QED): a621a5a41fb8f7dbb19e03ec8f75c50f3b26b546
picmistandard: release 0.0.19
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 22.04.. --format='- %s'

• Release 22.05 (#3076)
• Abort if BTD selected for RZ, and unsupported field/particle varnames (#3074)
• Doc: Update Perlmutter Python/HDF5 (#3079)
• [pre-commit.ci] pre-commit autoupdate (#3078)
• Use the same types for different pinned-memory particles (#3072)
• Update CUDA repo key (#3069)
• Add profiling to ParticleBoundaryBuffer::gatherParticles (#3061)
• Doc: PICMI HPC System Update Requirements (#3060)
• AMReX: Weekly Update (#3059)
• Docs: Ascent 0.8.0 on Summit (#3057)
• Perlmutter: Boost Software Module (QED) (#3053)
• Stencil.py: Follow PEP 8 Coding Style (#3055)
• Current Deposition Interfaces: Always Pass dt & relative_time (#2937)
• add after diagnostic python callback (#3043)
• Fix a bug about particle weight. (#3052)
• Summit: Prepend Hostname & Mapping (#3040)
• [pre-commit.ci] pre-commit autoupdate (#3049)
• AMReX/PICSAR: Weekly Update (#3046)
• Avoid unnecessary construction of CopyParticleAttribs (#3042)
• Remove Nodal Synchronization of J and Rho (#3038)
• RZ + openPMD : don't transpose data, save data with shape (Nm, Nz, Nr) (#3030)
• AMReX: Update to latest commit (#3037)
• [pre-commit.ci] pre-commit autoupdate (#3039)
• Fix Bug in WarpX::MoveWindow (#3034)
• Signal: Cleanup (Simplify) (#3031)
• Implemented the BCK fallback for the ECT solver (#3016)
• Vay Deposition: Fix SyncCurrent, FFTs (#3012)
• Extend do_pml_Lo/Hi to MR Levels (#2890)
• Fix MPI Signal Handling on Perlmutter (#3029)
• Minor fixes removing warnings from MSVC C++ (#3022)
• Added PlasmaLens class to PICMI (#3025)
• AMReX: Update to latest commit (#3021)
• Semicoarsening in electrostatic solvers (#3024)
• LoadBalanceCosts: Fix Unused Vars in Script
• LoadBalanceCosts: num_cells & num_macro_particles (#3019)
• Refactoring: More General Interfaces (#2991)
• Moving Frame Field Probe Functionality (#2996)
• Allow process signals to trigger checkpoint or break behavior (#2896)
• Switch test to use common build with openPMD enabled (#2988)

22.04

Dependencies

AMReX: 22.04
PICSAR (development, incl. QED): e7ef03b852b889d69cfaf3852ab1aa926d20fcb0
picmistandard: release 0.0.19
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 22.03.. --format='- %s'

• Release 22.04 (#3018)
• CI: Fix Small Issue w/ Langmuir Plots (#3010)
• CI: NVHPC New Apt Repo (#3014)
• Add particle filter in ParticleReductionFunctor (#3001)
• AMReX/PICSAR: Weekly Update (#3003)
• BTD : Redistribute Particles in buffer to lab frame box array and copy with (local=true) (#2986)
• Doc: Plotfile Serialization Parameters (#3005)
• Add propagation_direction to PICMI lasers (#2992)
• Take into account the cost of shiftMF in load-balancing (#3008)
• Langmuir 3D Tests: Better Analysis Plots (#2999)
• Change particle filter parser to check it as a boolean instead of comparing to 0.5 (#3007)
• Docs: Fix syntax issues in parameters.rst (#3009)
• Use Utils::TextMsg::Err in Message Logger (#3000)
• Clean up handling of v_galilean (#2989)
• Docs: Fix Missing "s" in .adios2_engine.parameters (#3002)
• Docs: Updates Profiling Perlmutter (#2993)
• Add Field Probe to Laser Ion Test (#2998)
• Synchronize all nodal points in sub-cycling loop (#2995)
• add openPMD test for particle_fields_diags to CI (#2975)
• Perform mesh refinement taggin on GPU (#2990)
• openPMD RZ modes dumped in thetaMode (#2878)
• openPMD: Handle Zero Particles Well (#2980)
• Vay Deposition: Separate Arrays, Correct Index Types w/ FFTs (#2965)
• Hybrid Algorithms: Add FDTD Support for Centering (#2327)
• AMReX: Update latest commit (#2987)
• Measure time taken in the moving window (#2985)
• Add profile region for Evolve (#2983)
• Streamline profiling documentation (#2971)
• LaserAccelection_1d: Use same build as other 1D tests (#2982)
• Doc: Major Cori Update (#2978)
• Minimum digits for plotfile cell and particle data is 5 (#2973)
• Removed used of separate bc arguments (#2977)
• Docs: Cori Python & Testing (#2969)
• openPMD: Only Write up to Finest Level (#2970)
• fix documentation with pml_has_particles instead of the old do_particles_in_pml (#2974)
• RZ: Use WarpX::ncomps more consistently (#2951)
• ABLASTR: Full Library (#2968)
• Initialize buffer data only for the required levels in the output (#2967)
• [pre-commit.ci] pre-commit autoupdate (#2966)
• FAQ: Forward Declarations (#2957)
• Langmuir 2D Tests: Better Analysis Plots (#2960)
• FFT of J: Use Spectral Index of Correct MR Level (#2961)
• FFT of J: Use Correct Current w/ Current Centering (#2962)
• QED: Add Space in Multiline Warnings (#2956)
• Add by-cell averages of particle properties (#2892)
• Load-balancing heuristic weights: not negative by default (#2963)
• WarpX/PICSAR Version Define: File (#2959)
• ABLASTR: Move TextMsg (#2953)
• Default CFL to 0.999 instead of 0.7 (#2940)
• CMake: pip_install w/o MPI (#2950)
• Clean Pip Staging Directory (#2954)
• Clean up the use of ndt for collisions (#2944)
• fix ambiguity in Parser from amrex and ExternalFieldInitType (#2955)
• allow diagnostic data_list to be None (#2949)
• move MCC modules to a new folder inside "Particles/Collision/" (#2945)
• Add background stopping (#2884)
• Make error and info messages visually uniform (#2939)
• doxygen comments for static variables in WarpX class (#2935)
• properly handle MCC collision subcycling (#2934)
• AMReX: Update latest commit (#2932)
• CCache: Generalize Linux Paths
• Fix Levels when reading raw data from a MR simulation (#2929)
• CI: CUDA/HIP Modernize CCache Location
• CI: Newer CCache for HIP (#2928)
• WarpX Static Attributes: Clean Up Types (#2922)
• CI: Newer CCache for CUDA (#2927)
• Print Fundamental PIC Parameters to Stdout (#2753)
• Rename serialize_ics as serialize_initial_conditions (#2925)
• Refactor Vay Deposition Functions (#2885)
• Macroscopic Maxwell solver: do not update fields in EB (stair-case approximation) (#2899)

22.03

Dependencies

AMReX: 22.03
PICSAR (development, incl. QED): e7ef03b852b889d69cfaf3852ab1aa926d20fcb0
picmistandard: release 0.0.19
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 22.02.. --format='- %s'

• Release 22.03 (#2912)
• file_min_digits: 5->6 (#2385)
• Fix bug in setting weight with refine_plasma option. (#2907)
• Add More Doxygen Strings (#2921)
• Python_restart_eb: Add CMake Options (#2919)
• PICMI: warpx_file_min_digits (#2914)
• CI: Cache for GitHub Actions (#2920)
• pml_psatd_rz: w/o dynamic scheduling (#2909)
• Bugfix for LB + MR + Filter (#2917)
• add documentation for load_balance_costs_update_algo (#2915)
• Docs: FAQ (#2911)
• Add Some Doxygen Strings (#2916)
• Rigid Injection: Serialize RNG (#2913)
• Fix BTD: Hard-Coded Digits (#2910)
• Docs: Verbose CUDA PTX Builds (#2894)
• Check that the relative permittivity epsilon is always strictly positive (#2906)
• openPMD: ED-PIC in Runtime Attributes (#2903)
• ionization_level -> ionizationLevel (#2905)
• openPMD: DumpToFile Validate Vectors (#2904)
• AMReX/PICSAR: Weekly Update (#2898)
• fix some bugprone-narrowing-conversions issues (#2893)
• Correct field initialization in 2D/RZ (#2895)
• Add Coulomb collision installation to picmi.py (#2864)
• Relativistic ES - only add the E-field due to boundary potentials once (#2722)
• MCC: allow background density and temperature to be functions of space and time (#2881)
• Make rigid injected particles work with QED (#2861)
• Crusher (OLCF): New ROCm module (#2891)
• Conda: Add pkg-config (#2879)
• Modified EM field initialization in XZ/RZ with EB (#2725)
• Doc: Perlmutter Python & PSATD+RZ Environment (#2846)
• openPMD: Avoid Managed Memory (Fields) (#2859)
• Lassen: Work-Around MPI Allgatherv (#2874)
• Remove (almost) all residual "dangerous" c-style casts in WarpX (#2889)
• Updated documentation for predefined_profile_params for parabolic_channel (#2880)
• Add mesh refinement for electrostatic solver and scraping (#2728)
• Re-order all particle quantities when doing MR partition (#2888)
• Bug fix. (#2887)
• fix sign error in refine plasma option (#2883)
• GCC 11: Silence Warning in ShapeFactors (#2857)
• openPMD: Add ADIOS2 Engine Parameter Control (#2872)
• Fix number of guard cell for coarse patch (#2869)
• Do Not Fill PML Guard Cells w/ Inverse FFTs (#2854)
• Update parsing of FieldProbe in 2D and 1D (#2818)
• Add warning to FieldProbe re: Boosted Frame (#2868)
• Rotate momentum for RZ flux injection (#2867)
• Refactor Current Correction Functions (#2839)
• Lassen: Fix Chunked HDF5 with MPI (#2863)
• Provide t_min and t_max for flux injection (#2842)
• ABLASTR: Refactor deposit_charge API (#2856)
• ParticleBuffer: Generalize & Move (#2860)
• Gaussian particle beam: add error message when using y_rms = 0 in 2D (#2862)
• Correct typo in the relativistic Poisson solver (#2853)
• update CI to use ascent 0.8.0 release container (#2858)
• AMReX/PICSAR: Weekly Update (#2849)
• Allow flux injection in the out-of-plane direction for RZ/2D geometry (#2788)
• Only set modified k to 0 for even number of points (#2852)
• Use parser to read laser spatio-temporal couplings direction (#2843)
• Don't cut all particles in a Gaussian beam when x_rms=0 (#2844)
• User-defined integer and real particle attributes (#2735)
• Add amrex REPO and BRANCH flags for python builds (#2845)
• Fix some offsets with the gather buffers (#2847)
• Rename ngE as ngEB (used for E,B) (#2841)
• ABLASTR: particle weights const (#2838)
• BackTransformParticleFunctor: Unused Counter (#2840)
• Adding documentation for lxplus (#2756)
• NCIGodfreyFilter: Fix Int Division (#2837)
• Crusher: CMake 3.22.1 (#2835)
• Implement some clang-tidy suggestions (#2826)
• Binary Collisions: Const & Restrict (#2829)
• AMReX/PICSAR: Weekly Update (#2836)
• replace deprecated header ctype.h with cctype (#2831)
• fix issues found with performance-for-range-copy clang-tidy check (#2833)
• simplify WarpXUtil::is_in (#2834)
• Fixes removing implicit double to float conversions (#2687)
• added local flag to warpx_getNumParticles (#2828)
• Updated documentation regarding MCC collisions (#2827)
• Apply clang-tidy suggestions to MsgLogger and WarnManager (#2823)
• CMake: Add More Pip Helpers (#2822)
• Docs: NERSC Jupyter ipympl==0.8.6 (#2825)
• Fix typo in laser assert (#2824)
• Fixing the computation of ECT Rho Field (#2711)
• Rename PSATD Classes (#2805)

22.02

Dependencies

AMReX: 22.02
PICSAR (development, incl. QED): 15651b072cd9a45a5a5061d8cf7b928d136e39f3
picmistandard: release 0.0.19
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 22.01.. --format='- %s'

• Release 22.02 (#2820)
• 3D LWFA PICMI Test: Add Electron Beam (#2723)
• Docs: Glossary (ECP, LDRD, BLAST & ABLASTR) (#2813)
• QED example inputs: simplify initialization of product species (#2816)
• Docs: NERSC ipympl Work-Around (#2815)
• Add myself to .zenodo.json (#2817)
• Docs: Improve Provisioning Perf Tests (#2780)
• Read species size correctly (#2799)
• Fix Bug with Damped BCs & MR (#2809)
• CI: Do Not Set diag1.file_prefix in runtime_params (#2811)
• Doc: Document run_test.sh manipulation (#2812)
• Prepare for CI: Remove PGI (#2814)
• allow add_particles to be called with empty numpy arrays i.e. injecting zero particles (#2808)
• AMReX: Update latest (#2810)
• Add abort on warning threshold (#2751)
• [pre-commit.ci] pre-commit autoupdate (#2806)
• Summit: Fix Batch Template (#2807)
• Add Modern Electron contributors to .zenodo.json (#2800)
• BTD: clean left over comment (#2804)
• Langmuir_multi_psatd_div_cleaning: Remove G Benchmark (#2803)
• Separate Class for Multi-J PSATD Algo (#2748)
• FieldProbe: Fixed Assert Typo (#2802)
• Docs: Update Acknowledgement & Citations (#2783)
• Fix: Move MPI Thread Level Check (#2786)
• Fix Docs of MinAndMaxPositions (#2787)
• Add Python callbacks before and after collisions (#2791)
• Regressions: Remove Tolerance (#2789)
• style fixes in WarpXWrappers.cpp (#2792)
• fix typo in docstring for ImpactIonizationTransformFunc constructor (#2793)
• Add tiny profiling to reduced diagnostics (#2794)
• expose WarpXParticleContainer::sumParticleCharge to Python (#2790)
• udpate zenodo (#2784)
• Add SyncRho call to warpx_depositChargeDensity (#2777)
• Update .zenodo.json (#2782)
• Funding/Acknowledgements: CEA-LIDYL. (#2781)
• RZ FDTD: Filter Not Working (Abort) (#2775)
• Docs: Crusher Load cce module (#2770)
• AMReX: Update latest (#2773)
• PML Exchanges: Less Duplicate Code (#2394)
• CI: GNUmake (#2769)
• RZ: Add error message when using 0 order for azimuthal decomposition (#2772)
• remove check on geometry (#2771)
• Access species specific charge density from python (#2710)
• AMReX: Update latest (#2752)
• Implement PML for the outer RZ boundary with PSATD (#2211)
• Doc: Perlmutter Note _g Batch Script (#2767)
• Docs: Clang 7+ (#2763)
• Fix unstable Python_particle_attr_access CI tests (#2766)
• Sphinx: Clean Warnings/Formatting (#2758)
• Docs: Reorder HPC Profiles + Batch Scripts (#2757)
• RigidInjection_BTD: Specify H5 Backend (#2761)
• Fix override default particle tiling (#2762)
• CI: Run initial_distribution on 1 MPI Process (#2760)
• RZ: Do Not Add geometry.coord_sys (#2759)
• Refactor python callback handling (#2703)
• Docs: Python Dev Install --no-deps (#2750)
• Do Not Read/Use Centering Info if do_nodal=1 (#2754)
• Python: Fix UB in Inputs Passing (#2726)
• .editorconfig: add missing newline
• CI: Use new "archive_output = 0" mode (#2749)
• Set geometry earlier in picmi (#2745)
• CI: Use New "verbose" mode (#2747)
• Fix ASSERT for Hybrid Scheme & MR (#2744)
• Field probe line detector (#2513)
• CI: Reduce Runtime of Some PSATD Tests (#2704)
• Docs: Add Crusher-OLCF (#2741)
• Use signed distance instead of imp. func when computing distance to EB. (#2682)
• GPU RDC: Disable also for HIP (#2742)
• Fixing staircased EM solver (#2739)
• Modification of the Perlmutter guide in order to run a job (#2736)
• Don't attempt to use costs when working on PML grids. (#2737)
• Make moving window dimensionality consistent in PICMI (#2721)
• AMReX/PICSAR: Weekly Update (#2731)
• Initialize EB grid data on restart. (#2689)
• Fix PML with anisotropic refinement ratio (#2734)
• More efficient PML BoxArray (#2631)
• Sort the argument list that Python writes to the inputs files (#2732)
• Multi-J: J Always Linear in Time (#2679)
• Particle Buffer for Backtransformed Diagnostics (#1898)
• Python Script to Compute PSATD Stencil (#2364)
• Add Coulomb collision and nuclear fusion subfolders (#2389)
• Allow Dirichlet BCs on r boundaries in RZ (electrostatic) (#2714)

22.01

Dependencies

AMReX: 22.01
PICSAR (development, incl. QED): 7b5449f92a4b30a095cc4a67f0a8b1fc69680e15
picmistandard: release 0.0.18
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 21.12.. --format='- %s'

• Release 22.01 (#2718)
• Docs: Add New Inputs (Manual) (#2717)
• Docs: Spack Dev - Relax MPL Pin (#2715)
• Add PICMI Scripts for LWFA Tests (#2700)
• pre-commit autoupdate (#2712)
• Regression Testing: Use Mainline & CMake (#2556)
• CI: mpi4py breaking setuptools API (#2713)
• Test particle scraping for EB in RZ. (#2691)
• Adding staircased EB in the PMLs (#2693)
• Docs: Add Missing Default for warpx.serialize_ics (#2706)
• removed distinct functions computePhiRZ and computePhiCartesian since these function now share mostly the same code (#2709)
• Change _libwarpx.py functions to LibWarpX class methods (#2696)
• Add embedded BC in RZ. (#2602)
• ParticleMoments: Deduct Lambda Ret Type (#2705)
• Doxygen: include static functions (#2701)
• Add runtime option to use DM that is 'similar' to the mother grids in the PML. (#2665)
• pre-commit: Python imports (#2686)
• Update AMReX (RZ Poisson) (#2699)
• CMake: openPMD on by default (#2698)
• RZ correction in 2d RZ Poisson slver (#2697)
• Inputs: geometry.dims option (#2685)
• [pre-commit.ci] pre-commit autoupdate (#2695)
• AMReX: Weekly Update (#2694)
• AMREX_ALWAYS_ASSERT -> AMREX_ASSERT for deposition bounds checks (#2688)
• For Python inputs, values with temporary variables are wrapped in quotes (#2690)
• Generalize Analysis Scripts: Number of Digits (plt) (#2683)
• added RZ support in libwarpx function _get_boundary_number (#2680)
• Wrap shared object in a class to control its loading (#2637)
• AMREX_SPACEDIM : EB, Filter, Laser, Utils, and Diagnostics (#2677)
• Adding new inputs to picmi.ElectromagneticSolver (#2676)
• Doxygen: Fix Diags, FieldSolver, Parallelization & Particles (#2662)
• ABLASTR: Cleanups & Particle Moments (#2675)
• CI: Azure Cache Ignore Errors (#2678)
• CI: Reduce Runtime of Some Galilean Tests (#2625)
• Docs: Perlmutter Early Science (#2674)
• Cori: c-blosc Support (#2636)
• Examples: Python ShellBang & Executable (#2673)
• CI: Remove (particle_)tolerance (#2669)
• pre-commit: check json (#2670)
• Fix: Missing EB analysis.py Permissions (#2672)
• Fix: pre-commit run -a (#2671)
• ABLASTR: Fix Doxygen in DepositCharge
• Refactor DepositCharge so it can be called from ImpactX. (#2652)
• Adding EB multifabs to the Python interface (#2647)
• Add load balancing test (#2561)
• AMReX/PICSAR: Weekly Update (#2666)
• Add anisotropic mesh refinement example (#2650)
• Add high energy asymptotic fit for Proton-Boron total cross section (#2408)
• Fix the scope of profiler for SYCL (#2668)
• Add PML Support for multi-J Algorithm (#2603)
• Fixing the initialization of the EB data in ghost cells (#2635)
• Python: Add 3.10, Relax upper bound (#2664)
• Docs: Fix Warning Logger Typo (#2667)
• ABLASTR Library (#2263)
• C++17: if constexpr for templates in ShapeFactors (#2659)
• QED openPMD Tests: Specify H5 Backend (#2661)
• ICC CI: Unbound Vars (setvars.sh) (#2663)
• use_default_v_<galilean,comoving> Only w/ Boosted Frame (#2654)
• fix for setting the boundary condition potentials in 1D ES simulations (#2649)
• use if constexpr to replace template specialization (#2660)
• fix check for absolute library install path (#2646)
• CMake: 3.18+ (#2651)
• Docs: python3 -m pip & Virtual Env (#2656)
• PWFA 1D: Fix output name
• Fix: analysis_default_regression.py
• Python/setup.py: picmistandard==0.0.18
• Azure: Ensure latest venv installed
• Python GNUmake: Remove Prefix Hacks
• GNUmake installwarpx: mv -> cp
• Azure: pre-install setuptools upgrade
• Regression/requirements.txt: openpmd-api
• Fix missing checksums1d (#2657)
• GNUmake & WarpX-test.ini: python -> python3
• Azure: set -eu -o pipefail
• Add: Regression/requirements.txt
• GNUmake: Fix Python Install (force) (#2655)
• run_test.sh: Own virtual env (#2653)
• CMake 3.22+: Policy CMP0127 (#2648)
• 1D tests for plasma acceleration (#2593)
• Perlmutter: December Update (#2645)
• C++17: structured bindings to replace "std::tie(x,y,z) = f()" (#2644)
• Replace AMREX_SPACEDIM: Evolve & FieldSolver (#2642)
• C++17, CMake 3.17+ (#2300)
• CI: Reduce Runtime of Test subcyclingMR (#2632)
• Added 1D support to fields.py (#2634)
• CI: Reduce Runtime of Test multi_J_2d_psatd (#2638)
• PSATD: Implement Scalar Damping for F,G (#2432)
• Transform the external fields into the boosted frame (#2610)
• apt & conda: Update Instructions for Deps (#2629)
• Add CI Test for Python Wrappers w/ PML (#2576)
• AMREX_SPACEDIM : Initialization and Particles (#2628)
• Redistribute particles in ContinuousFluxInjection (#2611)
• Docs: Archiving Workflows (#2621)
• Define WARPX_ZINDEX to denote the index for the Z dimension regardless of the build's dimensionality (#2622)
• Correct collision algorithm in RZ. (#2510)
• run_test.sh: Fix unbound WARPX_CI_TMP
• Azure CI: Cache (#2615)
• 3D Performance Tests: CI smaller (#2623)
• AMReX: Weekly Update (#2627)
• Fix: Installed Symlink LIB (#2626)
• extern 'C': Only in Headers (#2624)
• Fix out-of-bound in the initialization of EB (#2607)
• Replace AMREX_SPACEDIM: Boundary & Parallelization (#2620)
• Mention that the potentail should be constant inside EB (#2618)
• Fix out-of-bound in Inverse FFT of F,G (#2619)
• Add 2D Langmuir Test w/ MR & PSATD (#2605)
• div(E,B) Cleaning Options for PSATD (#2403)

21.12

Dependencies

AMReX: 21.12
PICSAR (development, incl. QED): 7b5449f92a4b30a095cc4a67f0a8b1fc69680e15
picmistandard: release 0.0.16
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 21.11.. --format='- %s'

• Release 21.12 (#2614)
• Fix installation location for libraries (#2583)
• MergeBuffersForPlotfile: Barrier (#2608)
• AMReX: Weekly Update (#2613)
• Dimensionality Docs: Default (#2609)
• Note that CCache 4.2 introduced large CUDA improvements (#2606)
• Added parallel pragma to ApplyBoundaryConditions (#2612)
• Fix segfault when importing _libwarpx without initializing WarpX (#2580)
• Throwing a warning if particle_shape>1 with EB (#2592)
• Replaced duplicated current deposition documentation (#2604)
• CONTRIBUTING: Update/Modernize (#2600)
• requirements.txt - PICMI development version (#2588)
• C++17: Work-Around NVCC gatherParticles (#2596)
• Fix Init of Vector Members (#2595)
• Python: Start 1D Support (#2582)
• Added abort error message to prevent using averaged Galilean PSATD with psatd.update_with_rho=0 (#2571)
• Proton-boron fusion: compute initial momentum of produced alphas (#2330)
• AMReX: Weekly Update (#2590)
• WarpX.cpp: Use Explicit Types, not auto (#2585)
• openPMD: 1D3V Support (#2586)
• Python: More Nullptr Checks (#2574)
• added cost of MCC collisions to load balancing calculation (when using Timers) (#2584)
• add github ci compile check for ascent (#2483)
• setup.py: beta -> stable (#2570)
• RZ PSATD, make blocking_factor a power of 2 (#2572)
• Bilinear Filter: Fix Warning (Vector) (#2575)
• 1D3V Cartesian Support (#2307)
• Mini-PR: Improve Python particle attribute access CI test (#2581)
• LaserInjectionFromTXYEFile Test: Use MPI (#2577)
• Add WARPX_PROFILE calls to each python callback. (#2573)
• WarpXComm.cpp: Use Explicit Types, not auto (#2578)
• Bug fixes and cleanup in load balancing (#2563)
• WarpXMovingWindow.cpp: Add amrex:: Prefix (#2579)
• Apply PEC to Split PML Fields (#2541)
• Fix: GNUmake Python Link -g (#2568)
• added superLU solver example to docs (#2567)
• Cell Center Macroscopic Properties (#2530)
• Clean up input files for tests with MCC (#2552)
• Enhanced inline documentation of EB related data (#2562)
• Avoid code duplications in ECT face extension (#2557)
• Fixes to the EB init (#2565)
• Add 2D circle EB test (#2538)
• Docs: Fix .rst Label in PML, rm .tex (#2537)
• AMReX/PICSAR: Weekly Update (#2559)
• I/O performance hints for Summit (#2495)
• Bugfix in load balancing routine (#2555)
• Fix Instability in PML with PSATD (#2558)
• 2D EM solver with EB (#2401)
• Add Ar and Xe to pre-defined particle types. (#2549)
• openPMD: 0.14.3 (#2551)
• std::ifstream: Defensive Patterns (#2547)
• Tests: numthreads to 1 (#2546)
• Regression Tests: OMP on (#2548)
• Spack Development: macOS & GNUmake (#2545)
• #2534: Don't access position vector values beyond the configured dimension (#2536)
• Fix #2522: Gaussian beam positions do not change with warpx.random_seed (#2523)
• Fix some issues with Fujitsu compiler (#2529)
• Summit: Update Numpy Hints (#2535)
• Install pre-commit (#2532)
• AMReX/PICSAR: Weekly Update (#2533)
• Fix Bug with Tilebox for G in PML (#2527)
• Doxygen: Fix Docs (#2526)
• added wrappers to get particle structs for the particles in the boundary buffers (#2498)
• PICMI: Add max_grid_size, blocking_factor in (x,y,z) (#2524)
• Add Python Wrappers for F,G in PML (#2481)
• ADIOS SST: Update libfabric wording
• Documentation: write default laser CEP (#2521)
• README: Remove "beta" badge (#2520)
• Replace AmrMesh bridge for AmrMeshParticle bridge (#2243)
• Change regex string to raw string (#2519)
• Change the way in which the laser particle weight is calculated. (#2417)
• Diagnostics Interval: Non-Optional Input (#2507)

21.11

Dependencies

AMReX (21.11-2-gaca6926e0a): aca6926e0a85a0fad4087bd47016edad0885252f
PICSAR (development, incl. QED): a78be127f66adc1558f527edc8964e37e3a055ff
picmistandard: release 0.0.14
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 21.10.. --format='- %s'

• Release 21.11 (#2518)
• Close BTD Snapshot when last slice is filled in. (#2516)
• Introduce AMReX change of stencil for Poisson solver (#2496)
• libfabric 1.6+: Document SST Work-Arounds (#2515)
• Update Summit Performance Tests (#2479)
• Revert "Update benchmark"
• Update benchmark
• Add option to specificy absolute tolerance for the MLMG solver (#2410)
• FieldProbe using Particle (#2430)
• ROCm 4.5: Dev Packages (#2511)
• Cori Haswell/KNL: Update PSATD+RZ Instructions (#2499)
• RZ: Allow initialization of only 1 particle per cell in theta, when using only m=0 (#2505)
• Spatially vary velocity (#2491)
• Fix Doxygen: Particles (#2486)
• Fix Doxygen: Utilities (#2485)
• Doxygen: Add Landing (Main) Page (#2509)
• Apply damping BC to any direction (#2503)
• Doxygen: Tagfile on RTD (#2497)
• CI: Draft Do Not Skip Source (#2500)
• Python Module for Analysis of Restart Tests (#2493)
• Fix BinaryCollision on GPU (#2504)
• More fixes for the Python fields module (#2502)
• Fix Doxygen: BTD (#2487)
• Revert latest amrex updates in order to fix CI (#2494)
• gitignore: add WarpX tagfile (#2490)
• Fix Doxygen: Embedded Boundaries (#2489)
• Fix Doxygen: FieldSolver/QED (#2488)
• PICMI: Add PML div(E),div(B) Cleaning Options (#2480)
• Raise an exception if an MultiFab was not intialized (#2476)
• Update AMReX to include EB solver fix (#2484)
• Bugfixes for ref_ratio = 4 in the moving window direction. (#2452)
• Modernize field access in yt scripts (#2455)
• Spatially vary temperature in momentum initialization (#2357)
• AMReX/PICSAR: Weekly Update (#2478)
• Make tests pml_x_psatd and pml_x_yee also restart tests. (#2444)
• Increase EB coarsening level for linear solvers (#2457)
• Fix Bug with Python Wrappers for F,G (#2474)
• Add automated test of refined injection feature. (#2473)
• PICMI: Add div(E),div(B) Cleaning Options (#2477)
• Fix average wall time per step (#2475)
• Fix damped BC when running with a single box (#2407)
• Docs: Tagfile (Doxygen) (#2463)
• Fix fields indexing (#2469)
• Added documentation for the Python interface (#2465)
• CI: Test Windows + openPMD (#2440)
• Add Python Wrappers for F,G (#2460)
• Raw Diagnostics: Plot rho,F Automatically (#2456)
• Div(B) Cleaning: Change Normalization of G (#2429)
• Add 2D Langmuir Test with MR (#1716)
• ⚠️ Add warning logger (#2113)
• Increase tolerance for single precision test & reset checksums (#2454)
• Simplify momentum initialization in example input files (#2309)
• BinaryCollision: implement particle creation functor (#2315)
• Add reduced diag test in single precision (#2398)
• Added --detach to the updating scripts (#2447)
• Simplify Esirkepov formula even more (#2374)
• Use os.path.join in picmi.py for portability (#2400)
• GH Action CI Builds: Ninja (#2428)
• Docs: Nsight-Systems (#2436)
• Fix typo: code-block
• OLCF/NERSC: Post-Processing (Jupyter) (#2443)
• Option to do single precision mesh communication. (#2294)
• AMReX/PICSAR: Weekly Update (#2442)
• Improve BeamRelevant reduced diagnostics using AMReX_Tuple. (#2435)
• Spack: No More load -r (#2439)
• move kinetic energy calculation into Particles/Algorithms (#2441)
• Multi-J Algo: Synchronize Nodal Points of F,G (#2434)
• Add Test: openPMD PICMI (#2438)
• Add automated test for repelling particles (#2427)
• Windows: FS Separator (#2424)
• Gaussian Laser : fix possible NaN in the calculation of theta_stc (#2433)
• CI: Windows with Python (#2412)
• Made explicit several casts (#2431)
• Synchronize GPU before stopping profile timer (#2415)
• CI: SENSEI (#2210)
• Reduced Diags: Clean Definitions (Spaces) (#2426)
• PML: Fix Index Type of G in Nodal Case (#2425)
• Improvements to the field probe reduced diags (#2416)
• CI Test multi_J_2d_psatd: More Field Output (#2420)
• Docs: Add GPU Memory Sizes (#2414)
• Add "-d" to the checkout to suppress the detached head notice (#2418)
• Multi-J Algo: Synchronize Nodal Points of E,B (#2406)
• Temporarily remove the multi_J_rz_psatd test (#2411)
• Docs: Perlmutter sbatch (#2413)
• Update amrex commit, so as to fix CI bug (#2409)
• Fix PML Behavior in FillBoundary for F,G (#2383)
• Increase number of guard cells allocated with multi-J algorithm (#2377)
• Field probe reduced diagnostics (#2154)
• Add total cross section for proton boron nuclear reaction (#2301)
• Use parser for more input parameters (#2386)
• avoid naked new for reduced_diags (#2396)
• Reduced diagnostics: fix calculation of particle energy in single precision (#2397)
• Remove unused pusher_algo parameter (#2388)
• Allow Neumann domain boundary conditions for the electrostatic potential (#2345)
• Azure: Ubuntu 20.04 (#2302)
• Add Python Analysis for CI Test uniform_plasma_restart (#2393)
• Multi-J & Galilean RZ PSATD: Serialize RNG (#2404)
• Docs: serialize_ics (#2405)
• AMReX/PICSAR: Weekly Update (#2402)
• correct_misprint (#2395)
• Fix checkpoint with runtime components through the Python interface. (#2332)
• Improve Python Analysis of Restart Tests (#2384)
• Remove unused fftw_plan_measure parameter (#2387)
• Interpolate mu to B-location when computing H (#2252)
• Fix memory leak in I/O in rz mode (#2391)
• Implement Higginson's nuclear fusion algorithm (#2290)
• Python Analysis of Restart Tests: Small Cleanup (#2368)
• FillBoundaryG: Add PML Exchange (#2381)
• CI: Groups Include Branch (#2378)
• Documentation: add link to AMReX doc that lists available parser functions (#2380)
• Docs: Simplify Release Log (#2372)
• NodalSync: Less Duplicate Code (#2375)
• Simplify formulas for Esirkepov deposition (#2373)
• CI: mpi4py NVHPC work-around (#2379)
• Capitalize python environment variables in CI workflows (#2376)
• CU: NVHPC (CUDA) (#2371)
• Fix my_constants being cast to float in single precision (#2369)
• Electrostatic boundary condition handling refactor (#2303)
• Add structure for proton-boron fusion module (#2217)

21.10

Dependencies

AMReX: release 21.10
PICSAR (development, incl. QED): a78be127f66adc1558f527edc8964e37e3a055ff
picmistandard: release 0.0.14
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 21.09.. | grep -A 3 "Author: " | grep -B 1 "\-\-" | sed '/--/d' | sed -e 's/^    /- /'

• Release 21.10 (#2370)
• Implement Checkpoint / Restart for Laser Particles (#2360)
• Docs PoP: Fix Co-Authors (#2367)
• Fix restart for rigid injected particles (#2363)
• Style: Old BTD Definitions (#2352)
• CMake: More Robust git STRIP (#2358)
• Remove array of ints done_injecting (#2365)
• Rigid injected species: Remove unused function and variables (#2350)
• Update AMReX (#2362)
• CI: Update HIP Repo URL (#2359)
• Use correct positions for the moving window of the BTD (#2356)
• Update read_raw_data to RZ (with multiple modes) (#2313)
• Stencil: Fix non-3D Compiles on GPU (#2353)
• Comoving PSATD: New Input psatd.use_default_v_comoving (#2304)
• SumBoundary: Use Fewer Guard Cells for J/rho (#2323)
• Summit: Known Issues Since RHEL8 (#2349)
• Allow more work for OpenMP threads in WarpX::UpdateAuxilaryData (#2342)
• AMReX: Weekly Update (#2348)
• Doc: Disable CCache (#2339)
• ParticleIO: Fix All Container Restart (#2341)
• Restart: Handle Header File Read Errors (#2335)
• DPC++: Disable -fPIC (#2338)
• Python Install Env Vars: All CAPS (#2317)
• Stochastic particle reflection from absorbing domain boundaries (#2281)
• Fix nvcc compilation bug (#2333)
• Print Restart: dt,dx,dy,dz (#2334)
• Exchange fewer guard cells with standard PSATD solver (#2266)
• Initialize the BTD buffers to 0.0 (#2329)
• Docs: Cori V100 GPU Job Script (#2328)
• Move RandomizeVelocity to ParticleUtils (#2326)
• External Poisson solver: wrappers to copy the full domain rho and phi between C++ and Python (#2285)
• Docs: Cori Newer CMake (#2324)
• leveling_thinning: 2 MPI Ranks (#2321)
• Python CI: Only 2 Ranks (#2320)
• Rename eb_potential parameter (#2310)
• Fix Bug in PSATD Restart with Time Averaging (#2318)
• AMReX/PICSAR: Weekly Update (#2316)
• Rename WarpXWrappers.(h->H) (#2261)
• Docs: Link Older Developer Tutorial (#2311)
• Fix: Status CUDA CI
• Performance: ApplyStencil w/o Temporaries (#2314)
• Evolve: Mark Step in Profile (#2308)
• CI: Skip & Fail Draft PRs (#2312)
• Set EB (electrostatic) potential with a function of space and time (#2297)
• Add picmi parameter (#2306)
• Move QEDEvents() before OneStep functions (#2289)
• AMReX/PICSAR: Weekly Update (#2299)
• Docs: Spock CMake 3.20.2, ROCm 4.3.0 (#2288)
• Store and read in (if present) dmaps in checkpoint files (#2248)
• Enable particle creation from binary collisions (#2245)
• Remove unused variable from backtransformed diagnostics (#2296)
• Various updates related to defining embedded boundaries in Python (#2280)
• warpx_py_beforeEsolve & _afterEsolve with electrostatic solver (#2286)
• Initialize physical_species (#2273)
• Include Diagnostics in Evolve Timer (#2278)
• Fix uninitialized particle data (#2282)
• Fix floating point exception issue in single precision (#2284)
• Perlmutter: CMake 3.22 Preview (#2291)
• Allow Restarts and Checkpoints in python picmi (#2274)
• CI: EB on Intel DPC++/SYCL (#2279)
• fix doc compilation on Spock (#2287)
• Summit: Work-Around IBM MPI Collectives (#2283)
• Summit: PICMI Update (#2275)
• CI: Build EB (#2170)
• AMReX Update: SENSEI (#2276)
• Docs: Summit Ascent Update (#2241)
• Docs: Summit w/o Darshan (#2272)

21.09

Dependencies

AMReX: release 21.09
PICSAR (development, incl. QED): c16b642e3dcf860480dd1dd21cefa3874f395773
picmistandard: release 0.0.14
openPMD-api: releases 0.14.2-0.14.*

List of PRs merged since the last release

This list was generated with

git log 21.08.. | grep -A 3 "Author: " | grep -B 1 "\-\-" | sed '/--/d' | sed -e 's/^    /- /'

• Release 21.09 (#2270)
• Bug fix in call to RhoFunctor for RZ modes (#2271)
• silence unused params errors in FlushFormatSensei (#2265)
• [mini-PR] Improved doc on fwd headers (#2267)
• Docs: Perlmutter Aug 30th Update (#2262)
• Docs: Summit umask (Permissions) (#2260)
• Initializing geometric data also with the CKC solver (#2254)
• Add link to repo visual structure (#2256)
• Add profiling for charge deposition (#2253)
• Added parsing in intervals (#2246)
• Glossary: OTP/2FA (#2251)
• Docs: ADIOS2 Fixed on Summit (#2239)
• Docs: Perlmutter (#2229)
• Make buffer of scraped particles available to Python code (#2164)
• AMReX/PICSAR: Weekly Update (#2249)
• CI: Rename Travis -> CI (#2250)
• ECT conformal solver (#1923)
• CI: Trap NaNs, Divisions by Zero, Overflows (#2205)
• Fix EB: CUDA Lambda Visibility (#2247)
• Ascent: Include for Profiler (#2238)
• Functionality to save particle positions from the previous step (#2206)
• Use ROCm 4.3 in CI (#2240)
• Improvement in electrostic field solve when using EB & a small refactoring of the Electrostatic solver (#2143)
• Laser-Ion Example: Fix Histogram Functs (#2232)
• Particle Unit Conversion: Generalize (#2223)
• add include to fix compiler error (#2237)
• Update AMReX: Parser, SENSEI (#2236)
• Fix SENSEI & Ascent component in AMReX.cmake (#2235)
• Multi-J: Optimize Allocations of rho MultiFabs (#2224)
• GetPosition 2D3V: y=0 (#2233)
• rearranging the loops (#2231)
• Avoid Unnecessary FFTs of rho (#2234)
• Fix: Missing Include Guards (FWD) (#2226)
• Alphabetized and added PR to glossary (#2228)
• WarpXComm.cpp: Fix Bug (Uninitialized MultiFabs) (#2230)
• Docs: Fix Summit Python (#2227)
• Avoid an NaN in collision module (#2225)
• Use the function SyncRho and the array rho_fp in the Electrostatic solver (#1811)
• Enable restart with PSATD (#1367)
• Ascent/SENSEI: Add Profiler (#2204)
• Check for unused WarpX environment variables when compiling (#2208)
• Scalar field interpolator from grid to particle position (#2221)
• AMReX/PICSAR: Weekly Update (#2222)
• No particle resorting when no species (#2136)
• Docs: Cori PICMI Instructions (#2219)
• Evolve: Reorder py_afterstep and cur_time break (#2213)
• Added transform of fields from lab to boosted frame (#2201)
• Allow Silver-Mueller boundary conditions to only be applied in certain directions (#2220)
• Docs: OLCF ADIOS2 Currently Broken
• Updated the installation instructions (#2218)
• Particle boundary scrape (#2124)
• Improved error handling when the libwarpx shared object library can't be loaded (#2215)
• Docs: Summit with RHEL8 (#2216)
• Add plot_raw_rho in parameters doc (#2212)
• Ionization.H: Fix Bug (Division by Zero) (#2214)
• Implemented the parsing of integer input parameters (#2138)
• Bug fixed: looping over all species now within OneStep_multiJ (#2207)
• Rho Diags: Do Not Allocate rho_fp/cp, Remove plot_rho, setplot_rho (#2203)
• update use-sensei flag (#2192)
• openPMD-api: 0.14.2 (#2150)
• CI: Cancel Prev. GH Action on Push (#2202)
• Minor fix to the documentation of the plasma lens (#2200)
• Update Scripts: .ini file (#2191)
• Use less guard cells in ParallelCopy of refined level's UpdateAuxilaryData (#2144)
• Multi-J (Hybrid): Fix Bug with Current Centering (#2181)
• do_pml should not be parsed anymore. (#2183)
• AMReX/PICSAR: Weekly Update (#2199)
• Docs: Summit Ascent Moved (#2195)
• Fixed issue where GPU runs would continually print 're-sorting particles' even with verbose turned off (#2197)
• Docs: Fix Cori URL (404) (#2194)
• Implemented new style BTD in picmi (#2187)
• WarpX::Version: Not Empty (#2193)
• For plasma lens, mapped particle to lab frame (#2190)
• Fix GetIteration (#2189)
• Docs: Turner Example Calibration Data (#2185)
• Work-Around: ROCm/rocFFT <=4.3.0 (#2180)
• [mini-PR] Radiation Reaction : fix issue in single precision (#2186)
• Updated documentation for the plasma lens (#2182)
• AMReX/PICSAR: Weekly Update (#2184)
• CI: Cover Performance Tests (#2179)
• Fix: Performance Tests (Boundary) (#2178)
• fix typo (#2175)
• EB: RZ Warnings (#2176)
• ES Solver: Fix SP Build (#2174)
• make parameter less prone to numerical issues in single precision (#2173)
• More cleanup of particle boundaries (#2171)
• In add_particles, used None for input parameter values (#2169)
• Moved some routines to .cpp file (#2168)
• Shift parsing of physical/mathematical constants from hard-coding to table lookup (#2128)
• RZ PSATD: Time Averaging for Multi-J Algorithm (#2141)
• Add particle weight as an explicit argument for _libwarpx.py::add_particles() (#2161)
• Fixed bug where specifying write_dir for particle diagnostic did not work (#2167)
• Added B field to plasma lens (#2163)
• BinaryCollision: use more general particle data structure (#2137)
• PEC Analysis: Remove Unused Imports (#2165)
• openPMD: Missing Include (#2162)
• openPMD: Use Steps if != BTD (#2157)
• openPMD: Style Cleaning (Dec/Def) (#2160)