From 47056aa66ab6cf0e07ec62b1b5a28fa96c3431aa Mon Sep 17 00:00:00 2001 From: Kirill Tsukanov Date: Wed, 29 Jan 2020 16:48:30 +0000 Subject: [PATCH] Review: emphasis on not including header lines --- docs/manual-curation.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/manual-curation.md b/docs/manual-curation.md index 5bd57e11..a167e9ae 100644 --- a/docs/manual-curation.md +++ b/docs/manual-curation.md @@ -88,7 +88,7 @@ The “Status” column has the following acceptable values: Sometimes, especially when copy-pasting information from external sources, a mapping label or URL can contain an additional space symbol (at the beginning or end) or an accidental line break. This causes problems in the downstream processing and must be manually removed. To minimise the occurences of this, Google Sheets template includes a validation formula for the first two columns (“URI of selected mapping” and “Label of selected mapping”). If it detects an extra space symbol or a line break, the cell will be highlighted in red. ## Exporting curation results -Once the manual curation is completed, apply a spreadsheet filter so that only traits with Status = DONE are visible. Copy data for all non-empty rows from three columns: “ClinVar label”; “URI of selected mapping”; “Label of selected mapping”, in that order. Do not include header lines. Save the data to a file `${BATCH_ROOT}/trait_mapping/finished_mappings_curation.tsv`. +Once the manual curation is completed, apply a spreadsheet filter so that only traits with Status = DONE are visible. Copy data for all non-empty rows from three columns: “ClinVar label”; “URI of selected mapping”; “Label of selected mapping”, in that order. **Do not include header lines.** Save the data to a file `${BATCH_ROOT}/trait_mapping/finished_mappings_curation.tsv`. Concatenate automated and manual mappings into a single file: ```bash