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obs_columns_by_experiment.json
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{
"E-GEOD-100058": [
"cell_type",
"developmental_stage",
"genotype",
"organism_part",
"organism",
"sex",
"single_cell_quality",
"submitted_single_cell_quality",
"cell_type.1",
"single_cell_identifier",
"cell_type_ontology",
"developmental_stage_ontology",
"genotype_ontology",
"organism_part_ontology",
"organism_ontology",
"sex_ontology",
"single_cell_quality_ontology",
"submitted_single_cell_quality_ontology",
"cell_type_ontology.1",
"single_cell_identifier_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-100426": [
"age",
"cell_type",
"facs_marker",
"individual",
"organism_part",
"organism",
"single_cell_quality",
"strain",
"age.1",
"cell_type.1",
"single_cell_identifier",
"stimulus",
"age_ontology",
"cell_type_ontology",
"facs_marker_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_ontology",
"single_cell_quality_ontology",
"strain_ontology",
"age_ontology.1",
"cell_type_ontology.1",
"single_cell_identifier_ontology",
"stimulus_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-100618": [
"cell_type",
"facs_marker",
"organism_part",
"organism",
"cell_type.1",
"single_cell_identifier",
"cell_type_ontology",
"facs_marker_ontology",
"organism_part_ontology",
"organism_ontology",
"cell_type_ontology.1",
"single_cell_identifier_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-100911": [
"age",
"cell_type",
"genotype",
"organism_part",
"organism",
"single_cell_quality",
"cell_type.1",
"single_cell_identifier",
"age_ontology",
"cell_type_ontology",
"genotype_ontology",
"organism_part_ontology",
"organism_ontology",
"single_cell_quality_ontology",
"cell_type_ontology.1",
"single_cell_identifier_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-102475": [
"cell_type",
"organism_part",
"organism",
"strain",
"environmental_stress",
"single_cell_identifier",
"cell_type_ontology",
"organism_part_ontology",
"organism_ontology",
"strain_ontology",
"environmental_stress_ontology",
"single_cell_identifier_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-103011": [
"developmental_stage",
"organism_part",
"organism",
"sex",
"strain",
"organism_part.1",
"single_cell_identifier",
"developmental_stage_ontology",
"organism_part_ontology",
"organism_ontology",
"sex_ontology",
"strain_ontology",
"organism_part_ontology.1",
"single_cell_identifier_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-103334": [
"age",
"cell_type",
"developmental_stage",
"genotype",
"individual",
"organism_part",
"organism",
"sex",
"single_cell_quality",
"genotype.1",
"single_cell_identifier",
"time",
"age_ontology",
"cell_type_ontology",
"developmental_stage_ontology",
"genotype_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_ontology",
"sex_ontology",
"single_cell_quality_ontology",
"genotype_ontology.1",
"single_cell_identifier_ontology",
"time_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-103771": [
"age",
"cell_type",
"developmental_stage",
"disease",
"genotype",
"organism_part",
"organism",
"sex",
"strain",
"cell_type.1",
"age_ontology",
"cell_type_ontology",
"developmental_stage_ontology",
"disease_ontology",
"genotype_ontology",
"organism_part_ontology",
"organism_ontology",
"sex_ontology",
"strain_ontology",
"cell_type_ontology.1",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_1.0",
"louvain_resolution_2.0"
],
"E-GEOD-106540": [
"cell_subtype_surface_markers",
"cell_subtype",
"cell_type",
"clinical_information",
"disease",
"genotype",
"geographical_location",
"individual",
"organism_part",
"organism",
"single_cell_quality",
"cell_subtype.1",
"clinical_information.1",
"genotype.1",
"single_cell_identifier",
"cell_subtype_surface_markers_ontology",
"cell_subtype_ontology",
"cell_type_ontology",
"clinical_information_ontology",
"disease_ontology",
"genotype_ontology",
"geographical_location_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_ontology",
"single_cell_quality_ontology",
"cell_subtype_ontology.1",
"clinical_information_ontology.1",
"genotype_ontology.1",
"single_cell_identifier_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-GEOD-106973": [
"cell_type",
"facs_marker",
"organism_part",
"organism",
"sex",
"strain",
"cell_type.1",
"single_cell_identifier",
"cell_type_ontology",
"facs_marker_ontology",
"organism_part_ontology",
"organism_ontology",
"sex_ontology",
"strain_ontology",
"cell_type_ontology.1",
"single_cell_identifier_ontology",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-1": [
"age",
"cause_of_death",
"clinical_history_alcohol",
"clinical_history_smoking",
"development_stage",
"disease",
"height",
"individual",
"organism_part",
"organism_status",
"organism",
"sex",
"weight",
"authors_cell_type_-_ontology_labels",
"authors_cell_type",
"organism_part.1",
"sampling_time",
"age_ontology",
"cause_of_death_ontology",
"clinical_history_alcohol_ontology",
"clinical_history_smoking_ontology",
"development_stage_ontology",
"disease_ontology",
"height_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"sex_ontology",
"weight_ontology",
"authors_cell_type_-_ontology_labels_ontology",
"authors_cell_type_ontology",
"organism_part_ontology.1",
"sampling_time_ontology",
"n_genes",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-10": [
"cause_of_death",
"developmental_stage",
"disease",
"gestational_age",
"immunophenotype",
"individual",
"organism_part",
"organism_status",
"organism",
"sex",
"authors_cell_type_-_ontology_labels",
"authors_cell_type",
"gestational_age.1",
"immunophenotype.1",
"individual.1",
"cause_of_death_ontology",
"developmental_stage_ontology",
"disease_ontology",
"gestational_age_ontology",
"immunophenotype_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"sex_ontology",
"authors_cell_type_-_ontology_labels_ontology",
"authors_cell_type_ontology",
"gestational_age_ontology.1",
"immunophenotype_ontology.1",
"individual_ontology.1",
"n_genes",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-11": [
"age",
"cell_type",
"developmental_stage",
"disease",
"individual",
"organism_part",
"organism_status",
"organism",
"sampling_site",
"sex",
"authors_cell_type_-_ontology_labels",
"authors_cell_type",
"disease.1",
"individual.1",
"age_ontology",
"cell_type_ontology",
"developmental_stage_ontology",
"disease_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"sampling_site_ontology",
"sex_ontology",
"authors_cell_type_-_ontology_labels_ontology",
"authors_cell_type_ontology",
"disease_ontology.1",
"individual_ontology.1",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-13": [
"age",
"cause_of_death",
"cell_type",
"developmental_stage",
"disease",
"individual",
"organism_part",
"organism_status",
"organism",
"progenitor_cell_type",
"sex",
"authors_cell_type_-_ontology_labels",
"authors_cell_type",
"cell_type.1",
"time",
"age_ontology",
"cause_of_death_ontology",
"cell_type_ontology",
"developmental_stage_ontology",
"disease_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"progenitor_cell_type_ontology",
"sex_ontology",
"authors_cell_type_-_ontology_labels_ontology",
"authors_cell_type_ontology",
"cell_type_ontology.1",
"time_ontology",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-14": [
"age",
"developmental_stage",
"disease",
"individual",
"organism_part",
"organism_status",
"organism",
"sex",
"strain",
"compound",
"disease.1",
"dose",
"age_ontology",
"developmental_stage_ontology",
"disease_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"sex_ontology",
"strain_ontology",
"compound_ontology",
"disease_ontology.1",
"dose_ontology",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-15": [
"age",
"biosource_provider",
"developmental_stage",
"disease",
"ethnic_group",
"individual",
"organism_part",
"organism_status",
"organism",
"sex",
"smoking_behavior",
"authors_cell_type",
"disease.1",
"single_cell_library_construction",
"age_ontology",
"biosource_provider_ontology",
"developmental_stage_ontology",
"disease_ontology",
"ethnic_group_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"sex_ontology",
"smoking_behavior_ontology",
"authors_cell_type_ontology",
"disease_ontology.1",
"single_cell_library_construction_ontology",
"n_genes",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-16": [
"developmental_stage",
"disease",
"genotype",
"individual",
"organism_part",
"organism",
"sampling_site",
"strain",
"sampling_site.1",
"developmental_stage_ontology",
"disease_ontology",
"genotype_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_ontology",
"sampling_site_ontology",
"strain_ontology",
"sampling_site_ontology.1",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-17": [
"developmental_stage",
"disease",
"genotype",
"individual",
"organism_part",
"organism_status",
"organism",
"developmental_stage.1",
"genotype.1",
"developmental_stage_ontology",
"disease_ontology",
"genotype_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"developmental_stage_ontology.1",
"genotype_ontology.1",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-18": [
"age",
"developmental_stage",
"disease",
"genotype",
"individual",
"organism_part",
"organism_status",
"organism",
"sampling_site",
"strain",
"developmental_stage.1",
"age_ontology",
"developmental_stage_ontology",
"disease_ontology",
"genotype_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"sampling_site_ontology",
"strain_ontology",
"developmental_stage_ontology.1",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
],
"E-HCAD-21": [
"age",
"cell_type",
"developmental_stage",
"disease",
"immunophenotype",
"individual",
"organism_part",
"organism_status",
"organism",
"sex",
"stimulus",
"disease.1",
"stimulus.1",
"age_ontology",
"cell_type_ontology",
"developmental_stage_ontology",
"disease_ontology",
"immunophenotype_ontology",
"individual_ontology",
"organism_part_ontology",
"organism_status_ontology",
"organism_ontology",
"sex_ontology",
"stimulus_ontology",
"disease_ontology.1",
"stimulus_ontology.1",
"doublet_score",
"predicted_doublet",
"n_genes_by_counts",
"log1p_n_genes_by_counts",
"total_counts",
"log1p_total_counts",
"total_counts_mito",
"log1p_total_counts_mito",
"pct_counts_mito",
"n_counts",
"n_genes",
"louvain_resolution_0.1",
"louvain_resolution_0.3",
"louvain_resolution_0.5",
"louvain_resolution_0.7",
"louvain_resolution_1.0",
"louvain_resolution_2.0",
"louvain_resolution_3.0",
"louvain_resolution_4.0",
"louvain_resolution_5.0"
]
}