Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

update qc to handle new standard #64

Open
jdhayhurst opened this issue Nov 23, 2022 · 0 comments
Open

update qc to handle new standard #64

jdhayhurst opened this issue Nov 23, 2022 · 0 comments

Comments

@jdhayhurst
Copy link
Contributor

input hm_rsid (generated from main_pysam.py), rsid (user uploaded but is optional)
if not rsid:
rename hm_rsid to rsid
else:
compare hm_rsid to rsid (as we currently do hm_rsid against variant_id)
if hm_rsid not equal or synonymous to rsid - drop record
rename hm_rsid to rsid
@jiyue1214 jiyue1214 added enhancement New feature or request and removed enhancement New feature or request labels Jun 13, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@jdhayhurst @jiyue1214