From 3d8b27fa3fbbe01d080c16fd8f08340a70f7e0ae Mon Sep 17 00:00:00 2001
From: jiyue1214 <52689284+jiyue1214@users.noreply.github.com>
Date: Tue, 11 Jun 2024 09:20:01 +0100
Subject: [PATCH] Update quality_control.nf

---
 subworkflows/local/quality_control.nf | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/subworkflows/local/quality_control.nf b/subworkflows/local/quality_control.nf
index ac573558..513f4f8f 100644
--- a/subworkflows/local/quality_control.nf
+++ b/subworkflows/local/quality_control.nf
@@ -19,7 +19,8 @@ workflow quality_control{
     //ch_to_log: val(GCST), val(mode),path(all_hm), path('harmonized.qc.tsv'), path('report.txt'), path (total_sum), path(yaml), path (input)
 
     def to_log=chroms.flatten().last()
-    harmonization_log(to_log,ch_to_log,unmapped)
+    input_log=ch_to_log.combine(unmapped,by:0)
+    harmonization_log(to_log,input_log)
 
     emit:
     qclog=harmonization_log.out.running_result