diff --git a/subworkflows/local/quality_control.nf b/subworkflows/local/quality_control.nf index ac57355..513f4f8 100644 --- a/subworkflows/local/quality_control.nf +++ b/subworkflows/local/quality_control.nf @@ -19,7 +19,8 @@ workflow quality_control{ //ch_to_log: val(GCST), val(mode),path(all_hm), path('harmonized.qc.tsv'), path('report.txt'), path (total_sum), path(yaml), path (input) def to_log=chroms.flatten().last() - harmonization_log(to_log,ch_to_log,unmapped) + input_log=ch_to_log.combine(unmapped,by:0) + harmonization_log(to_log,input_log) emit: qclog=harmonization_log.out.running_result