From 894a8a034b0980b2ff9ec87bc2b344e02873e926 Mon Sep 17 00:00:00 2001 From: Zoe May Pendlington Date: Mon, 14 Oct 2024 11:48:46 +0100 Subject: [PATCH] Added STRT-seq terms for #2251 --- src/ontology/efo-edit.owl | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl index de909a81..2f90e105 100644 --- a/src/ontology/efo-edit.owl +++ b/src/ontology/efo-edit.owl @@ -17228,6 +17228,8 @@ Declaration(Class(efo:EFO_0022841)) Declaration(Class(efo:EFO_0022842)) Declaration(Class(efo:EFO_0022843)) Declaration(Class(efo:EFO_0022844)) +Declaration(Class(efo:EFO_0022845)) +Declaration(Class(efo:EFO_0022846)) Declaration(Class(efo:EFO_0030000)) Declaration(Class(efo:EFO_0030001)) Declaration(Class(efo:EFO_0030002)) @@ -207598,6 +207600,23 @@ AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022844 "stool transplantat AnnotationAssertion(rdfs:label efo:EFO_0022844 "fecal microbiota transplantation"@en) SubClassOf(efo:EFO_0022844 efo:EFO_0002571) +# Class: efo:EFO_0022845 (modified STRT-seq) + +AnnotationAssertion(dc:creator efo:EFO_0022845 "Zoe May Pendlington") +AnnotationAssertion(dc:date efo:EFO_0022845 "2024-10-14T10:41:11Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022845 "3' STRT-seq") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022845 "A modified version of STRT-seq developed by Fuchou Tang's lab as described in PMID: 28457750, which enriched the 3' end of transcripts and used UMI (unique molecular identifier) for quantification.") +AnnotationAssertion(rdfs:label efo:EFO_0022845 "modified STRT-seq"@en) +SubClassOf(efo:EFO_0022845 efo:EFO_0008953) + +# Class: efo:EFO_0022846 (5' STRT-seq) + +AnnotationAssertion(obo:IAO_0000115 efo:EFO_0022846 "A plate based platform that targets the 5' end of transcripts using a barcoded template switching oligonucleotide.") +AnnotationAssertion(dc:creator efo:EFO_0022846 "Zoe May Pendlington") +AnnotationAssertion(dc:date efo:EFO_0022846 "2024-10-14T10:43:10Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label efo:EFO_0022846 "5' STRT-seq"@en) +SubClassOf(efo:EFO_0022846 efo:EFO_0008953) + # Class: efo:EFO_0030000 (STARmap) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29930089") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0002-3090-9894") obo:IAO_0000115 efo:EFO_0030000 "STARmap is an image-based technology for 3D intact-tissue RNA sequencing, which integrates hydrogel-tissue chemistry, targeted signal amplification, and in situ sequencing.")