diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl index b3aca96c..43d45fab 100644 --- a/src/ontology/efo-edit.owl +++ b/src/ontology/efo-edit.owl @@ -29544,7 +29544,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001025 "located_in") AnnotationAssertion(rdfs:label obo:RO_0002104 "has_plasma_membrane_part") -# Object Property: obo:RO_0002160 (only_in_taxon) +# Object Property: obo:RO_0002160 (only in taxon) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20973947") obo:IAO_0000115 obo:RO_0002160 "S only_in_taxon T iff: S SubClassOf in_taxon only T") AnnotationAssertion(oboInOwl:hasDbXref obo:RO_0002160 "RO:0002160") @@ -88588,9 +88588,9 @@ SubClassOf(efo:EFO_0001203 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectio AnnotationAssertion(obo:IAO_0000117 efo:EFO_0001205 "James Malone") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0001205 "CLO:0007631") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0001205 "RRID:CVCL_0617") -AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0001205 "MDA-MB-134VI") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0001205 "MDA-134") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0001205 "MDA-MB-134") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0001205 "MDA-MB-134VI") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0001205 "MDAMB134") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0001205 "MDAMB134VI") AnnotationAssertion(rdfs:label efo:EFO_0001205 "MDAMB134VI") @@ -95469,10 +95469,10 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002156 "James Malone") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002156 "BTO:0005135") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002156 "CLO:0002673") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002156 "RRID:CVCL_1155") -AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002156 "HTB-185") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002156 "D-283 Med-C") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002156 "D283") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002156 "H283") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002156 "HTB-185") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002156 "Med 283") AnnotationAssertion(rdfs:label efo:EFO_0002156 "D283Med") SubClassOf(efo:EFO_0002156 obo:CL_0000010) @@ -95493,9 +95493,9 @@ SubClassOf(efo:EFO_0002157 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectio AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002158 "Ele Holloway") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002158 "James Malone") -AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002158 "SNOMEDCT:259042002") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002158 "CLO:0002709") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002158 "RRID:CVCL_1168") +AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002158 "SNOMEDCT:259042002") AnnotationAssertion(rdfs:label efo:EFO_0002158 "DB") SubClassOf(efo:EFO_0002158 obo:CL_0000010) SubClassOf(efo:EFO_0002158 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0001642)) @@ -95629,9 +95629,9 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002170 "James Malone") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002170 "BTO:0000834") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002170 "CLO:0002752") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002170 "RRID:CVCL_1171") -AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002170 "Detroit 562") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002170 "D562") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002170 "Det562") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002170 "Detroit 562") AnnotationAssertion(rdfs:label efo:EFO_0002170 "Detroit562") SubClassOf(efo:EFO_0002170 obo:CL_0000010) SubClassOf(efo:EFO_0002170 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0000574)) @@ -97552,9 +97552,9 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002357 "Ele Holloway") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002357 "James Malone") AnnotationAssertion(efo:definition_citation efo:EFO_0002357 "https://www.atcc.org/products/all/CRL-2959.aspx") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002357 "RRID:CVCL_2206") -AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002357 "SU-DHL-6") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002357 "DHL-6") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002357 "DHL6") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002357 "SU-DHL-6") AnnotationAssertion(rdfs:label efo:EFO_0002357 "SUDHL6") SubClassOf(efo:EFO_0002357 obo:CL_0000010) SubClassOf(efo:EFO_0002357 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0000574)) @@ -100796,8 +100796,8 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002714 "James Malone") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002714 "BTO:0002864") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002714 "CLO:0050113") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002714 "RRID:CVCL_4056") -AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002714 "T3M4") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002714 "T3M-4") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002714 "T3M4") AnnotationAssertion(rdfs:label efo:EFO_0002714 "Panc89") SubClassOf(efo:EFO_0002714 obo:CL_0000010) SubClassOf(efo:EFO_0002714 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) @@ -104623,12 +104623,12 @@ AnnotationAssertion(owl:deprecated efo:EFO_0003071 "true"^^xsd:boolean) AnnotationAssertion(obo:IAO_0000117 efo:EFO_0003072 "James Malone") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0003072 "Tomasz Adamusiak") AnnotationAssertion(efo:definition_citation efo:EFO_0003072 "http://www.atcc.org/products/all/HTB-11.aspx") -AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0003072 "MCC:0000430") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0003072 "BTO:0001620") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0003072 "CLO:0009059") +AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0003072 "MCC:0000430") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0003072 "RRID:CVCL_0531") -AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0003072 "SKNSH") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0003072 "NSH") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0003072 "SKNSH") AnnotationAssertion(rdfs:label efo:EFO_0003072 "SK-N-SH") SubClassOf(efo:EFO_0003072 obo:CL_0000010) SubClassOf(efo:EFO_0003072 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0000621)) @@ -121837,21 +121837,20 @@ SubClassOf(efo:EFO_0004623 efo:EFO_0004747) SubClassOf(efo:EFO_0004623 ObjectSomeValuesFrom(obo:IAO_0000136 obo:CHEBI_36080)) SubClassOf(efo:EFO_0004623 ObjectSomeValuesFrom(obo:IAO_0000136 efo:EFO_0001941)) -# Class: efo:EFO_0004624 (prostate specific antigen measurement) +# Class: efo:EFO_0004624 (obsolete_prostate specific antigen measurement) AnnotationAssertion(obo:IAO_0000115 efo:EFO_0004624 "A PSA measurement is the quantification of prostate specific antigen typically in blood used in the diagnosis of prostate cancer.") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0004624 "Helen Parkinson") +AnnotationAssertion(obo:IAO_0100001 efo:EFO_0004624 "http://purl.obolibrary.org/obo/OBA_2050200") +AnnotationAssertion(efo:obsoleted_in_version efo:EFO_0004624 "3.64.0") +AnnotationAssertion(efo:reason_for_obsolescence efo:EFO_0004624 "Duplication") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0004624 "NCIt:C17634") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0004624 "SNOMEDCT:63476009") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0004624 "PSA levels") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0004624 "PSA measurement") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0004624 "prostate specific antigen levels") -AnnotationAssertion(rdfs:label efo:EFO_0004624 "prostate specific antigen measurement") -SubClassOf(efo:EFO_0004624 efo:EFO_0001444) -SubClassOf(efo:EFO_0004624 efo:EFO_0004747) -SubClassOf(efo:EFO_0004624 efo:EFO_0005127) -SubClassOf(efo:EFO_0004624 ObjectSomeValuesFrom(obo:IAO_0000136 obo:UBERON_0002367)) -SubClassOf(efo:EFO_0004624 ObjectSomeValuesFrom(obo:IAO_0000136 ObjectIntersectionOf(efo:EFO_0001663 ObjectSomeValuesFrom(obo1:has_role obo:CHEBI_59163)))) +AnnotationAssertion(rdfs:label efo:EFO_0004624 "obsolete_prostate specific antigen measurement") +AnnotationAssertion(owl:deprecated efo:EFO_0004624 "true"^^xsd:boolean) # Class: efo:EFO_0004625 (progranulin measurement) @@ -128999,9 +128998,9 @@ SubClassOf(efo:EFO_0005456 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectio # Class: efo:EFO_0005457 (SK-MM-1) AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0005457 "RRID:CVCL_A478") -AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0005457 "SKMM1") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0005457 "SK-MY-1") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0005457 "SK-My-1") +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0005457 "SKMM1") AnnotationAssertion(rdfs:label efo:EFO_0005457 "SK-MM-1") SubClassOf(efo:EFO_0005457 obo:CL_0000010) SubClassOf(efo:EFO_0005457 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0006475)) @@ -139178,8 +139177,8 @@ AnnotationAssertion(obo:IAO_0000115 efo:EFO_0006711 "human B-cell non-Hodgkin ly AnnotationAssertion(obo:IAO_0000117 efo:EFO_0006711 "Laura Huerta") AnnotationAssertion(efo:definition_citation efo:EFO_0006711 "http://www.dsmz.de/catalogues/details/culture/ACC-688.html") AnnotationAssertion(efo:definition_citation efo:EFO_0006711 "https://www.dsmz.de/catalogues/details/culture/ACC-688.html") -AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0006711 "PMID:11807979") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0006711 "BTO:0006414") +AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0006711 "PMID:11807979") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0006711 "RRID:CVCL_1881") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0006711 "LY7") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0006711 "OCI-Ly07") @@ -187269,13 +187268,16 @@ AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0020659 "PMID:28240269") AnnotationAssertion(rdfs:label efo:EFO_0020659 "prostaglandin g/h synthase 2 measurement") SubClassOf(efo:EFO_0020659 efo:EFO_0004747) -# Class: efo:EFO_0020660 (prostate-specific antigen measurement) +# Class: efo:EFO_0020660 (obsolete_prostate-specific antigen measurement) AnnotationAssertion(obo:IAO_0000115 efo:EFO_0020660 "The determination of the amount of prostate-specific antigen in a sample") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0020660 "Annalisa Buniello") +AnnotationAssertion(obo:IAO_0100001 efo:EFO_0020660 "http://purl.obolibrary.org/obo/OBA_2050200") +AnnotationAssertion(efo:obsoleted_in_version efo:EFO_0020660 "3.64.0") +AnnotationAssertion(efo:reason_for_obsolescence efo:EFO_0020660 "Duplication") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0020660 "PMID:28240269") -AnnotationAssertion(rdfs:label efo:EFO_0020660 "prostate-specific antigen measurement") -SubClassOf(efo:EFO_0020660 efo:EFO_0004747) +AnnotationAssertion(rdfs:label efo:EFO_0020660 "obsolete_prostate-specific antigen measurement") +AnnotationAssertion(owl:deprecated efo:EFO_0020660 "true"^^xsd:boolean) # Class: efo:EFO_0020661 (proteasome activator complex subunit 1 measurement)