TickPathogen_01_Download_NEON_tickpathogens.R

### ABOUT
## Script to download NEON Tick pathogen data for EDA
## 30 Jan 2020
## WEM
library(neonUtilities)
### downloading NEON data #####
# Tick Pathogen data are in DP1.10092.001
zipsByProduct(dpID = "DP1.10092.001", site = "all", package = "basic",
              savepath = "data_raw/", check.size = F) # downloads from NEON as zip
stackByTable("data_raw/filesToStack10092/") # merges zips into csv

tickPathogen <- read.csv("data_raw/filesToStack10092/stackedFiles/tck_pathogen.csv")
head(tickPathogen)