diff --git a/Dockerfile b/Dockerfile index 54be580..1c054f7 100644 --- a/Dockerfile +++ b/Dockerfile @@ -18,13 +18,13 @@ RUN Rscript -e 'repos <- BiocManager::repositories(); \ # RUN Rscript -e 'install.packages(c("DT", "patchwork", "reticulate", "reshape", "shadowtext", "shadowtext", \ # "scater", "ggsignif", "stringr", "ggpubr", "GGally", "ggplot2", "knitr", "latex2exp", "UpSetR"))' -RUN Rscript -e 'install.packages(c("dplyr", "DT", "ggpubr", "ggsignif", "latex2exp", "patchwork", "shadowtext", "reticulate"))' +RUN Rscript -e 'install.packages(c("dplyr", "DT", "ggsignif", "latex2exp", "patchwork", "shadowtext", "reticulate"))' # Install Bioconductor packages for case study RUN R -e 'BiocManager::install(c("BiocStyle", "ComplexHeatmap", "MGnifyR", "mia", "miaViz", "MOFA2", "scater"))' # Install HoloFoodR locally -RUN R -e 'devtools::install_local()' +RUN R -e 'devtools::install_local("/opt/pkg/")' # Install mofapy2 for case study # RUN python3 -m pip install 'https://github.com/bioFAM/mofapy2/tarball/master'