From c97444c2a30b99a5add42c57e3c9f4272eed3805 Mon Sep 17 00:00:00 2001
From: emiglietta <58238709+emiglietta@users.noreply.github.com>
Date: Wed, 13 Nov 2024 23:51:50 +0100
Subject: [PATCH] clarify docs

---
 documentation/DCP-documentation/step_2_submit_jobs.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/documentation/DCP-documentation/step_2_submit_jobs.md b/documentation/DCP-documentation/step_2_submit_jobs.md
index f26dfc8..0433078 100644
--- a/documentation/DCP-documentation/step_2_submit_jobs.md
+++ b/documentation/DCP-documentation/step_2_submit_jobs.md
@@ -100,6 +100,8 @@ Separate values with commas and no spaces and surround with quotation marks (e.g
 Formats wells passed with `--plate format` or `--rows` and `--columns` but not `--wells`.
 (e.g. `A1` NOT `A01`)
 * `--sites <value>`: a custom list of sites (fields of view) to be analyzed.
+Default is 9 sites (1 to 9).
+Not used by `illum`, `qc`, or `assaydev` steps.
 Separate values with commas and no spaces and surround with quotation marks (e.g. `"1,2,3,4,5,6"`)
 
 ### Overwrite structural defaults