Add nucleotides to aminoacidlist for protein-nucleic acid graphs

[DaniBodor]

• Note that the record type ATOM contains coordinates for atoms in standard residues, which include nucleic acids as well. So the amino acids are codified the same way as residues in pdb files. Including the data in the amino acid list as such should allow for most functionality to be expanded to protein-nucleotide interactions.
  • Only ATOM records
• Atom level + residue level. In such cases, residue level means base level. We'll add proper docs about that.
• We need to add bases as residues (in domain/aminoacidlist.py?)
• We may already think about calling the interaction classes differently, someway more general (at least PPIs)

[github-actions]

This issue is stale because it has been open for 30 days with no activity.

[LarryMelidisCRUK]

has this now been introduced to the code ?

[gcroci2]

has this now been introduced to the code ?

Hi! Not yet, but we plan to start working on these developments in September.

[github-actions]

This issue is stale because it has been open for 30 days with no activity.