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Refactor deeprank2.tools.target.add_targets function #499

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gcroci2 opened this issue Sep 20, 2023 · 1 comment
Open

Refactor deeprank2.tools.target.add_targets function #499

gcroci2 opened this issue Sep 20, 2023 · 1 comment
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nice to have low priority issues stale issue not touched from too much time

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@gcroci2
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gcroci2 commented Sep 20, 2023

Right now, in order to add a target Dataset to a HDF5 Group representing a ppi data point, the process is unnecessarily tedious. The user needs to create a file containing the IDs of the data points as they are in the HDF5 file + the new target values to be added.

We can think about improving its logic by taking as example the code I wrote for the 3D-Vac application. We need to save somewhere the query IDs of the processed data points (e.g., csv), so that than is going to be easier to associate the new targets to the IDs and to the HDF5 files Groups.

I think it's worth it to implement this when we'll have the data for the docking application. TBD exactly when

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This issue is stale because it has been open for 30 days with no activity.

@github-actions github-actions bot added the stale issue not touched from too much time label Oct 23, 2023
@gcroci2 gcroci2 added SS nice to have low priority issues and removed SS labels Jan 10, 2024
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nice to have low priority issues stale issue not touched from too much time
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