From 29a993014798ece05ba66f76c6f51adebce1046c Mon Sep 17 00:00:00 2001 From: Gene233 <44050457+Gene233@users.noreply.github.com> Date: Mon, 20 May 2024 11:39:23 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20DavisLab?= =?UTF-8?q?oratory/smartid@bd8ebb901341720266d713b26525445fbad3baed=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- LICENSE-text.html | 2 +- LICENSE.html | 2 +- articles/index.html | 2 +- articles/smartid_Demo.html | 8 ++++---- authors.html | 6 +++--- index.html | 2 +- news/index.html | 6 +++++- reference/cal_score.html | 2 +- reference/cal_score_init.html | 2 +- reference/gs_score.html | 2 +- reference/gs_score_init.html | 2 +- reference/iae.html | 2 +- reference/iae_hdb.html | 2 +- reference/iae_igm.html | 2 +- reference/iae_m.html | 2 +- reference/iae_prob.html | 2 +- reference/iae_rf.html | 2 +- reference/iae_sd.html | 2 +- reference/idf.html | 2 +- reference/idf_hdb.html | 2 +- reference/idf_iae_methods.html | 2 +- reference/idf_igm.html | 2 +- reference/idf_m.html | 2 +- reference/idf_prob.html | 2 +- reference/idf_rf.html | 2 +- reference/idf_sd.html | 2 +- reference/index.html | 2 +- reference/markers_hdbscan.html | 2 +- reference/markers_mclust.html | 2 +- reference/markers_mixmdl.html | 2 +- reference/ova_score_boxplot.html | 2 +- reference/scale_mgm.html | 2 +- reference/score_barplot.html | 2 +- reference/sim_sce_test.html | 2 +- reference/sin_score_boxplot.html | 2 +- reference/smartid_Package.html | 2 +- reference/tf.html | 2 +- reference/top_markers.html | 2 +- reference/top_markers_abs.html | 2 +- reference/top_markers_glm.html | 2 +- reference/top_markers_init.html | 2 +- 42 files changed, 51 insertions(+), 47 deletions(-) diff --git a/404.html b/404.html index 8e9885f..102ef55 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/LICENSE-text.html b/LICENSE-text.html index 0dd8020..8eef34c 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/LICENSE.html b/LICENSE.html index bde57fe..a4e7dc7 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/articles/index.html b/articles/index.html index 1bd2416..e8c00e4 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/articles/smartid_Demo.html b/articles/smartid_Demo.html index a5a6a42..9fa9f44 100644 --- a/articles/smartid_Demo.html +++ b/articles/smartid_Demo.html @@ -33,7 +33,7 @@ smartid - 1.1.0 + 1.1.1 @@ -272,7 +272,7 @@

Score Samples) ) #> user system elapsed -#> 0.206 0.003 0.210 +#> 0.21 0.00 0.21 
 
 ## score and tf,idf,iae all saved
@@ -495,7 +495,7 @@ 
Score Samples  )
 )
 #>    user  system elapsed 
-#>   0.205   0.000   0.206
+#> 0.179 0.024 0.203 
 
 ## new score is saved and tf,idf,iae all updated
@@ -581,7 +581,7 @@ 
SessionInfo#>  [9] GenomicRanges_1.57.0        GenomeInfoDb_1.41.0        
 #> [11] IRanges_2.39.0              S4Vectors_0.43.0           
 #> [13] BiocGenerics_0.51.0         MatrixGenerics_1.17.0      
-#> [15] matrixStats_1.3.0           smartid_1.1.0              
+#> [15] matrixStats_1.3.0           smartid_1.1.1              
 #> [17] BiocStyle_2.33.0           
 #> 
 #> loaded via a namespace (and not attached):
diff --git a/authors.html b/authors.html
index 3dbb116..30b3669 100644
--- a/authors.html
+++ b/authors.html
@@ -17,7 +17,7 @@
       
       
         smartid
-        1.1.0
+        1.1.1
@@ -73,13 +73,13 @@

Citation

Chen J (2024). smartid: Scoring and Marker Selection Method Based on Modified TF-IDF. -R package version 1.1.0, https://davislaboratory.github.io/smartid. +R package version 1.1.1, https://davislaboratory.github.io/smartid. 

@Manual{,
   title = {smartid: Scoring and Marker Selection Method Based on Modified TF-IDF},
   author = {Jinjin Chen},
   year = {2024},
-  note = {R package version 1.1.0},
+  note = {R package version 1.1.1},
   url = {https://davislaboratory.github.io/smartid},
 }
diff --git a/index.html b/index.html index 6346b72..580f62d 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/news/index.html b/news/index.html index ef344e7..55eea8f 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 @@ -80,6 +80,10 @@

smartid 0.99.4<

smartid 0.99.5

  • Update scale_mgm() function adding pooled SD option, add details for scale function.
    • +
+
+

smartid 1.1.1

+
  • Update cal_score() function to convert input sparse matrix into dense matrix.
diff --git a/reference/cal_score.html b/reference/cal_score.html index 99f4022..df2add0 100644 --- a/reference/cal_score.html +++ b/reference/cal_score.html @@ -19,7 +19,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/cal_score_init.html b/reference/cal_score_init.html index 936479e..c7d7000 100644 --- a/reference/cal_score_init.html +++ b/reference/cal_score_init.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/gs_score.html b/reference/gs_score.html index 8d4e387..c6f2e98 100644 --- a/reference/gs_score.html +++ b/reference/gs_score.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/gs_score_init.html b/reference/gs_score_init.html index 54e4420..08bf7e8 100644 --- a/reference/gs_score_init.html +++ b/reference/gs_score_init.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/iae.html b/reference/iae.html index 65ff29d..57e8814 100644 --- a/reference/iae.html +++ b/reference/iae.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/iae_hdb.html b/reference/iae_hdb.html index d5cd16b..5122253 100644 --- a/reference/iae_hdb.html +++ b/reference/iae_hdb.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/iae_igm.html b/reference/iae_igm.html index 0430758..7614f0f 100644 --- a/reference/iae_igm.html +++ b/reference/iae_igm.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/iae_m.html b/reference/iae_m.html index 3570413..f44f3a1 100644 --- a/reference/iae_m.html +++ b/reference/iae_m.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/iae_prob.html b/reference/iae_prob.html index 281bad7..75b8466 100644 --- a/reference/iae_prob.html +++ b/reference/iae_prob.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/iae_rf.html b/reference/iae_rf.html index 9fe9dc7..910f642 100644 --- a/reference/iae_rf.html +++ b/reference/iae_rf.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/iae_sd.html b/reference/iae_sd.html index 9208742..c0c8e88 100644 --- a/reference/iae_sd.html +++ b/reference/iae_sd.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf.html b/reference/idf.html index 644fa3f..560ff9d 100644 --- a/reference/idf.html +++ b/reference/idf.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf_hdb.html b/reference/idf_hdb.html index 7b83bc8..d035f02 100644 --- a/reference/idf_hdb.html +++ b/reference/idf_hdb.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf_iae_methods.html b/reference/idf_iae_methods.html index 85244e4..cf8ebc5 100644 --- a/reference/idf_iae_methods.html +++ b/reference/idf_iae_methods.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf_igm.html b/reference/idf_igm.html index 887d0fb..2402879 100644 --- a/reference/idf_igm.html +++ b/reference/idf_igm.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf_m.html b/reference/idf_m.html index c8b1e63..fc66f07 100644 --- a/reference/idf_m.html +++ b/reference/idf_m.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf_prob.html b/reference/idf_prob.html index d05d6dd..e1baeea 100644 --- a/reference/idf_prob.html +++ b/reference/idf_prob.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf_rf.html b/reference/idf_rf.html index e0003e3..48fa0da 100644 --- a/reference/idf_rf.html +++ b/reference/idf_rf.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/idf_sd.html b/reference/idf_sd.html index 4c6e6da..dd66133 100644 --- a/reference/idf_sd.html +++ b/reference/idf_sd.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/index.html b/reference/index.html index 0f5d692..bc4e7b9 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/markers_hdbscan.html b/reference/markers_hdbscan.html index e48f82e..2590224 100644 --- a/reference/markers_hdbscan.html +++ b/reference/markers_hdbscan.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/markers_mclust.html b/reference/markers_mclust.html index 90f3c8f..31e1c50 100644 --- a/reference/markers_mclust.html +++ b/reference/markers_mclust.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/markers_mixmdl.html b/reference/markers_mixmdl.html index 6a3290f..1ac9d60 100644 --- a/reference/markers_mixmdl.html +++ b/reference/markers_mixmdl.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/ova_score_boxplot.html b/reference/ova_score_boxplot.html index 3c7fb1c..9dc2ae9 100644 --- a/reference/ova_score_boxplot.html +++ b/reference/ova_score_boxplot.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/scale_mgm.html b/reference/scale_mgm.html index 7b03677..86f4c56 100644 --- a/reference/scale_mgm.html +++ b/reference/scale_mgm.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/score_barplot.html b/reference/score_barplot.html index cc14e46..3005cf1 100644 --- a/reference/score_barplot.html +++ b/reference/score_barplot.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/sim_sce_test.html b/reference/sim_sce_test.html index 698a372..973d1ce 100644 --- a/reference/sim_sce_test.html +++ b/reference/sim_sce_test.html @@ -18,7 +18,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/sin_score_boxplot.html b/reference/sin_score_boxplot.html index 422f80d..a889f4f 100644 --- a/reference/sin_score_boxplot.html +++ b/reference/sin_score_boxplot.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/smartid_Package.html b/reference/smartid_Package.html index 299ddac..4ce3f77 100644 --- a/reference/smartid_Package.html +++ b/reference/smartid_Package.html @@ -21,7 +21,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/tf.html b/reference/tf.html index 5d03959..1f047aa 100644 --- a/reference/tf.html +++ b/reference/tf.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/top_markers.html b/reference/top_markers.html index 352e794..b6a57d5 100644 --- a/reference/top_markers.html +++ b/reference/top_markers.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/top_markers_abs.html b/reference/top_markers_abs.html index 9ad68b1..f6b2b46 100644 --- a/reference/top_markers_abs.html +++ b/reference/top_markers_abs.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/top_markers_glm.html b/reference/top_markers_glm.html index 4856e79..151f544 100644 --- a/reference/top_markers_glm.html +++ b/reference/top_markers_glm.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1 diff --git a/reference/top_markers_init.html b/reference/top_markers_init.html index 55d4312..04f5c94 100644 --- a/reference/top_markers_init.html +++ b/reference/top_markers_init.html @@ -17,7 +17,7 @@ smartid - 1.1.0 + 1.1.1