requirements.txt

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_anaconda_depends=2019.03=py37_0
_libgcc_mutex=0.1=main
_pytorch_select=0.2=gpu_0
_r-mutex=1.0.1=anacondar_1
_tflow_select=2.1.0=gpu
absl-py=0.8.1=py37_0
adjusttext=0.7.3=pypi_0
alabaster=0.7.12=py37_0
anaconda-client=1.7.2=py37_0
anaconda-project=0.8.4=py_0
anaconda=custom=py37_1
asn1crypto=1.2.0=py37_0
astor=0.8.0=py37_0
astroid=2.3.3=py37_0
astropy=3.2.3=py37h7b6447c_0
atomicwrites=1.3.0=py37_1
attrs=19.3.0=py_0
autopep8=1.5.7=pypi_0
babel=2.7.0=py_0
backcall=0.1.0=py37_0
backports.os=0.1.1=py37_0
backports.shutil_get_terminal_size=1.0.0=py37_2
backports=1.0=py_2
beautifulsoup4=4.8.1=py37_0
bedtools=2.29.0=hc088bd4_3
biothings-client=0.2.5=pypi_0
bitarray=1.1.0=py37h7b6447c_0
bkcharts=0.2=py37_0
blas=1.0=mkl
bleach=3.1.0=py37_0
blosc=1.16.3=hd408876_0
bokeh=1.4.0=py37_0
boto=2.49.0=py37_0
bottleneck=1.3.1=py37hdd07704_0
bzip2=1.0.8=h7b6447c_0
c-ares=1.15.0=h7b6447c_1001
ca-certificates=2021.10.8=ha878542_0
cairo=1.14.12=h8948797_3
certifi=2021.10.8=py37h89c1867_1
cffi=1.13.2=py37h2e261b9_0
chardet=3.0.4=py37_1003
click=7.0=py37_0
cloudpickle=1.1.1=py_0
clyent=1.2.2=py37_1
colorama=0.4.1=py37_0
contextlib2=0.6.0.post1=py_0
cryptography=2.8=py37h1ba5d50_0
cudatoolkit=10.0.130=0
cudnn=7.6.4=cuda10.0_0
cupti=10.0.130=0
curl=7.67.0=hbc83047_0
cycler=0.10.0=py37_0
cython=0.29.14=py37he6710b0_0
cytoolz=0.10.1=py37h7b6447c_0
dask-core=2.8.1=py_0
dask=2.8.1=py_0
dbus=1.13.12=h746ee38_0
decorator=4.4.1=py_0
deeptools=3.5.0=py_0
deeptoolsintervals=0.1.9=py37hf01694f_2
defusedxml=0.6.0=py_0
distributed=2.8.1=py_0
docutils=0.15.2=py37_0
entrypoints=0.3=py37_0
et_xmlfile=1.0.1=py37_0
expat=2.2.6=he6710b0_0
fast-histogram=0.9=py37h161383b_2
fastcache=1.1.0=py37h7b6447c_0
filelock=3.0.12=py_0
flask=1.1.1=py_0
fontconfig=2.13.0=h9420a91_0
freetype=2.9.1=h8a8886c_1
fribidi=1.0.5=h7b6447c_0
fsspec=0.6.0=py_0
gast=0.2.2=py37_0
get_terminal_size=1.0.0=haa9412d_0
gevent=1.4.0=py37h7b6447c_0
glib=2.63.1=h5a9c865_0
glob2=0.7=py_0
gmp=6.1.2=h6c8ec71_1
gmpy2=2.0.8=py37h10f8cd9_2
google-pasta=0.1.8=py_0
graphite2=1.3.13=h23475e2_0
graphviz=2.40.1=h21bd128_2
greenlet=0.4.15=py37h7b6447c_0
grpcio=1.16.1=py37hf8bcb03_1
gst-plugins-base=1.14.0=hbbd80ab_1
gstreamer=1.14.0=hb453b48_1
h5py=2.9.0=py37h7918eee_0
harfbuzz=1.8.8=hffaf4a1_0
hdf5=1.10.4=hb1b8bf9_0
heapdict=1.0.1=py_0
html5lib=1.0.1=py37_0
htslib=1.9=ha228f0b_7
icu=58.2=h9c2bf20_1
idna=2.8=py37_0
imageio=2.6.1=py37_0
imagesize=1.1.0=py37_0
importlib_metadata=0.23=py37_0
intel-openmp=2019.4=243
intervaltree=3.0.2=py_0
ipykernel=5.1.3=py37h39e3cac_0
ipython=7.9.0=py37h39e3cac_0
ipython_genutils=0.2.0=py37_0
ipywidgets=7.5.1=py_0
isort=4.3.21=py37_0
itsdangerous=1.1.0=py37_0
jbig=2.1=hdba287a_0
jdcal=1.4.1=py_0
jedi=0.15.1=py37_0
jeepney=0.4.1=py_0
jinja2=2.10.3=py_0
joblib=0.14.0=py_0
jpeg=9b=h024ee3a_2
json5=0.8.5=py_0
jsonpickle=2.1.0=pypi_0
jsonschema=3.2.0=py37_0
jupyter=1.0.0=py37_7
jupyter_client=5.3.4=py37_0
jupyter_console=6.0.0=py37_0
jupyter_core=4.6.1=py37_0
jupyterlab=1.2.3=pyhf63ae98_0
jupyterlab_server=1.0.6=py_0
keras-applications=1.0.8=py_0
keras-preprocessing=1.1.0=py_1
keras-vis=0.5.0=pypi_0
keras=2.3.1=pypi_0
keyring=19.2.0=py37_0
kiwisolver=1.1.0=py37he6710b0_0
krb5=1.16.1=h173b8e3_7
lazy-object-proxy=1.4.3=py37h7b6447c_0
leidenalg=0.8.1=pypi_0
libarchive=3.3.3=h5d8350f_5
libcurl=7.67.0=h20c2e04_0
libdeflate=1.0=h14c3975_1
libedit=3.1.20181209=hc058e9b_0
libffi=3.2.1=hd88cf55_4
libgcc-ng=9.1.0=hdf63c60_0
libgcc=7.2.0=h69d50b8_2
libgfortran-ng=7.3.0=hdf63c60_0
liblief=0.9.0=h7725739_2
libpng=1.6.37=hbc83047_0
libprotobuf=3.10.1=hd408876_0
libsodium=1.0.16=h1bed415_0
libssh2=1.8.2=h1ba5d50_0
libstdcxx-ng=9.1.0=hdf63c60_0
libtiff=4.1.0=h2733197_0
libtool=2.4.6=h7b6447c_5
libuuid=1.0.3=h1bed415_2
libxcb=1.13=h1bed415_1
libxml2=2.9.9=hea5a465_1
libxslt=1.1.33=h7d1a2b0_0
llvmlite=0.30.0=py37hd408876_0
locket=0.2.0=py37_1
lxml=4.4.1=py37hefd8a0e_0
lz4-c=1.8.1.2=h14c3975_0
lzo=2.10=h49e0be7_2
macs2=2.2.7.1=py37hf01694f_1
markdown=3.1.1=py37_0
markupsafe=1.1.1=py37h7b6447c_0
matplotlib-base=3.1.3=py37hef1b27d_0
matplotlib-venn=0.11.6=pyh9f0ad1d_0
matplotlib=3.1.1=py37h5429711_0
mccabe=0.6.1=py37_1
mistune=0.8.4=py37h7b6447c_0
mkl-service=2.3.0=py37he904b0f_0
mkl=2019.4=243
mkl_fft=1.0.15=py37ha843d7b_0
mkl_random=1.1.0=py37hd6b4f25_0
mock=3.0.5=py37_0
modisco=0.5.8.0=pypi_0
more-itertools=7.2.0=py37_0
mpc=1.1.0=h10f8cd9_1
mpfr=4.0.1=hdf1c602_3
mpl-scatter-density=0.7=py_0
mpmath=1.1.0=py37_0
msgpack-python=0.6.1=py37hfd86e86_1
multipledispatch=0.6.0=py37_0
mygene=3.2.1=pypi_0
mysql-connector-c=6.1.6=2
nbconvert=5.6.1=py37_0
nbformat=4.4.0=py37_0
ncurses=6.1=he6710b0_1
networkx=2.4=py_0
ninja=1.9.0=py37hfd86e86_0
nltk=3.4.5=py37_0
nose=1.3.7=py37_2
notebook=6.0.2=py37_0
numba=0.46.0=py37h962f231_0
numexpr=2.7.0=py37h9e4a6bb_0
numpy-base=1.17.3=py37hde5b4d6_0
numpy=1.17.3=py37hd14ec0e_0
numpydoc=0.9.1=py_0
olefile=0.46=py37_0
openpyxl=3.0.1=py_0
openssl=1.1.1=h7b6447c_0
opt_einsum=3.1.0=py_0
packaging=19.2=py_0
pandas=0.25.3=py37he6710b0_0
pandoc=2.2.3.2=0
pandocfilters=1.4.2=py37_1
pango=1.42.4=h049681c_0
parso=0.5.1=py_0
partd=1.1.0=py_0
patchelf=0.10=he6710b0_0
path.py=12.0.2=py_0
pathlib2=2.3.5=py37_0
patsy=0.5.1=py37_0
pcre=8.43=he6710b0_0
pep8=1.7.1=py37_0
pexpect=4.7.0=py37_0
pickleshare=0.7.5=py37_0
pillow=6.2.1=py37h34e0f95_0
pip=20.0.2=py37_1
pixman=0.38.0=h7b6447c_0
pkginfo=1.5.0.1=py37_0
plotly=4.12.0=pyhd3eb1b0_0
pluggy=0.13.1=py37_0
ply=3.11=py37_0
prometheus_client=0.7.1=py_0
prompt_toolkit=2.0.10=py_0
protobuf=3.10.1=py37he6710b0_0
psutil=5.6.5=py37h7b6447c_0
ptyprocess=0.6.0=py37_0
py-lief=0.9.0=py37h7725739_2
py2bit=0.3.0=py37hf01694f_4
py=1.8.0=py37_0
pybedtools=0.8.0=py37he860b03_1
pybigwig=0.3.17=py37hc013797_0
pycodestyle=2.7.0=pypi_0
pycosat=0.6.3=py37h14c3975_0
pycparser=2.19=py37_0
pycrypto=2.6.1=py37h14c3975_9
pycurl=7.43.0.3=py37h1ba5d50_0
pydot=1.4.1=py37_0
pyflakes=2.1.1=py37_0
pygments=2.4.2=py_0
pylint=2.4.4=py37_0
pyodbc=4.0.27=py37he6710b0_0
pyopenssl=19.1.0=py37_0
pyparsing=2.4.5=py_0
pyqt=5.9.2=py37h05f1152_2
pyrsistent=0.15.6=py37h7b6447c_0
pysam=0.15.3=py37hda2845c_1
pysocks=1.7.1=py37_0
pytables=3.6.1=py37h71ec239_0
pytest-arraydiff=0.3=py37h39e3cac_0
pytest-astropy-header=0.1.1=py_0
pytest-astropy=0.6.0=py_0
pytest-doctestplus=0.5.0=py_0
pytest-openfiles=0.4.0=py_0
pytest-remotedata=0.3.2=py37_0
pytest=5.3.0=py37_0
python-dateutil=2.8.1=py_0
python-igraph=0.8.2=pypi_0
python-libarchive-c=2.8=py37_13
python=3.7.4=h265db76_1
python_abi=3.7=1_cp37m
pytorch-gpu=1.3.1=0
pytorch=1.3.1=cuda100py37h53c1284_0
pytz=2019.3=py_0
pyvis=0.1.9=pypi_0
pywavelets=1.1.1=py37h7b6447c_0
pyyaml=5.1.2=py37h7b6447c_0
pyzmq=18.1.0=py37he6710b0_0
qnorm=0.6.2=pyh9f0ad1d_0
qt=5.9.7=h5867ecd_1
qtawesome=0.6.0=py_0
qtconsole=4.6.0=py_0
qtpy=1.9.0=py_0
r-base=3.2.2=0
readline=7.0=h7b6447c_5
requests=2.22.0=py37_0
retrying=1.3.3=py37_2
rope=0.14.0=py_0
ruamel_yaml=0.15.46=py37h14c3975_0
samtools=1.9=h10a08f8_12
scikit-image=0.15.0=py37he6710b0_0
scikit-learn=0.21.3=py37hd81dba3_0
scipy=1.5.2=py37h0b6359f_0
seaborn-base=0.11.2=pyhd8ed1ab_0
seaborn=0.11.2=hd8ed1ab_0
secretstorage=3.1.1=py37_0
send2trash=1.5.0=py37_0
setuptools=42.0.1=py37_0
shap=0.35.0=py37h0da4684_0
simplegeneric=0.8.1=py37_2
singledispatch=3.4.0.3=py37_0
sip=4.19.8=py37hf484d3e_0
six=1.13.0=py37_0
snappy=1.1.7=hbae5bb6_3
snowballstemmer=2.0.0=py_0
sortedcollections=1.1.2=py37_0
sortedcontainers=2.1.0=py37_0
soupsieve=1.9.5=py37_0
sphinx=2.2.1=py_0
sphinxcontrib-applehelp=1.0.1=py_0
sphinxcontrib-devhelp=1.0.1=py_0
sphinxcontrib-htmlhelp=1.0.2=py_0
sphinxcontrib-jsmath=1.0.1=py_0
sphinxcontrib-qthelp=1.0.2=py_0
sphinxcontrib-serializinghtml=1.1.3=py_0
sphinxcontrib-websupport=1.1.2=py_0
sphinxcontrib=1.0=py37_1
spyder-kernels=0.5.2=py37_0
spyder=3.3.6=py37_0
sqlalchemy=1.3.11=py37h7b6447c_0
sqlite=3.30.1=h7b6447c_0
statannot=0.2.3=pypi_0
statannotations=0.4.2=pypi_0
statsmodels=0.12.0=py37h7b6447c_0
sympy=1.4=py37_0
tbb=2019.8=hfd86e86_0
tblib=1.5.0=py_0
tensorboard=2.0.0=pyhb38c66f_1
tensorflow-base=2.0.0=gpu_py37h0ec5d1f_0
tensorflow-estimator=2.0.0=pyh2649769_0
tensorflow-gpu=2.0.0=h0d30ee6_0
tensorflow-probability=0.8.0=py_0
tensorflow=2.0.0=gpu_py37h768510d_0
termcolor=1.1.0=py37_1
terminado=0.8.3=py37_0
testpath=0.4.4=py_0
texttable=1.6.2=pypi_0
tf-keras-vis=0.2.1=pypi_0
tk=8.6.8=hbc83047_0
toml=0.10.2=pypi_0
toolz=0.10.0=py_0
torchdiffeq=0.2.1=pypi_0
tornado=6.0.3=py37h7b6447c_0
tqdm=4.39.0=py_0
traitlets=4.3.3=py37_0
ucsc-bedtobigbed=357=1
ucsc-bigbedinfo=357=1
ucsc-bigbedsummary=357=1
ucsc-bigbedtobed=357=1
unicodecsv=0.14.1=py37_0
unixodbc=2.3.7=h14c3975_0
urllib3=1.24.2=py37_0
wcwidth=0.1.7=py37_0
webencodings=0.5.1=py37_1
werkzeug=0.16.0=py_0
wheel=0.33.6=py37_0
widgetsnbextension=3.5.1=py37_0
wrapt=1.11.2=py37h7b6447c_0
wurlitzer=2.0.0=py37_0
xlrd=1.2.0=py37_0
xlsxwriter=1.2.6=py_0
xlwt=1.3.0=py37_0
xz=5.2.4=h14c3975_4
yaml=0.1.7=had09818_2
zeromq=4.3.1=he6710b0_3
zict=1.0.0=py_0
zipp=0.6.0=py_0
zlib=1.2.11=h7b6447c_3
zstd=1.3.7=h0b5b093_0