diff --git a/README.md b/README.md
index 6e74d40..9453a14 100755
--- a/README.md
+++ b/README.md
@@ -1,10 +1,10 @@
 <img src="inst/extdata/deploid.png" width="180">
 
 [![License (GPL version 3)](https://img.shields.io/badge/license-GPL%20version%203-brightgreen.svg)](http://opensource.org/licenses/GPL-3.0)
-[![Build Status](https://travis-ci.org/DEploid-dev/DEploid-r.svg?branch=master)](https://travis-ci.org/DEploid-dev/DEploid-r)
+[![Build Status](https://travis-ci.org/DEploid-dev/DEploid-r.svg?branch=master)](https://app.travis-ci.com/DEploid-dev/DEploid-r)
 [![Build Status](https://ci.appveyor.com/api/projects/status/hi1nq97d5l68qs4r?svg=true)](https://ci.appveyor.com/project/shajoezhu/deploid-r)
 [![Coverage Status](https://coveralls.io/repos/github/DEploid-dev/DEploid-r/badge.svg?branch=master)](https://coveralls.io/github/DEploid-dev/DEploid-r?branch=master)
-[![codecov](https://codecov.io/gh/DEploid-dev/DEploid-r/branch/master/graph/badge.svg)](https://codecov.io/gh/DEploid-dev/DEploid-r)
+[![codecov](https://codecov.io/gh/DEploid-dev/DEploid-r/branch/master/graph/badge.svg)](https://app.codecov.io/gh/DEploid-dev/DEploid-r)
 [![CRAN RStudio Mirror Downloads](http://cranlogs.r-pkg.org/badges/DEploid)](https://cran.r-project.org/package=DEploid)
 
 DEploid R package -- Deconvolute Mixed Genomes with Unknown Proportions
diff --git a/inst/CITATION b/inst/CITATION
index 2acba60..1eb0f48 100755
--- a/inst/CITATION
+++ b/inst/CITATION
@@ -8,5 +8,5 @@ bibentry(
   journal = 'bioRxiv',
   doi = '10.1101/099499',
   publisher = 'Cold Spring Harbor Labs Journals',
-  url = 'http://www.biorxiv.org/content/early/2017/01/10/099499'
+  url = 'https://www.biorxiv.org/content/10.1101/099499v1'
 )
diff --git a/src/RcppExports.cpp b/src/RcppExports.cpp
old mode 100755
new mode 100644
diff --git a/vignettes/dEploid-Arguments.Rmd b/vignettes/dEploid-Arguments.Rmd
index 8a9e17e..0b5f149 100755
--- a/vignettes/dEploid-Arguments.Rmd
+++ b/vignettes/dEploid-Arguments.Rmd
@@ -198,8 +198,8 @@ Bibtex record::
   year = {2018},
   doi = {10.1101/387266},
   publisher = {Cold Spring Harbor Laboratory},
-  URL = {https://www.biorxiv.org/content/early/2018/08/09/387266},
-  eprint = {https://www.biorxiv.org/content/early/2018/08/09/387266.full.pdf},
+  URL = {https://www.biorxiv.org/content/10.1101/387266v1},
+  eprint = {https://www.biorxiv.org/content/biorxiv/early/2018/08/09/387266.full.pdf},
   journal = {bioRxiv}
   }