From c3d5d74c63867b691b0886263cce2a11c79d6837 Mon Sep 17 00:00:00 2001
From: Joe Zhu <sha.joe.zhu@gmail.com>
Date: Wed, 9 Aug 2017 14:03:32 +0100
Subject: [PATCH] turn off deploid mcmc progress

---
 .DEploid             | 2 +-
 src/DEploid/mcmc.cpp | 8 ++++++--
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/.DEploid b/.DEploid
index 8dc7366..ca779cb 160000
--- a/.DEploid
+++ b/.DEploid
@@ -1 +1 @@
-Subproject commit 8dc73663f442688055bc277910b845234e3dceb5
+Subproject commit ca779cb3547cb4ebb394199b172ec13eb9707771
diff --git a/src/DEploid/mcmc.cpp b/src/DEploid/mcmc.cpp
index a9412c4..1a6fc51 100644
--- a/src/DEploid/mcmc.cpp
+++ b/src/DEploid/mcmc.cpp
@@ -302,11 +302,15 @@ void McmcMachinery::runMcmcChain( bool showProgress, bool useIBD, bool notInR ){
         dout << endl;
         dout << "MCMC iteration: " << this->currentMcmcIteration_ << endl;
         if ( this->currentMcmcIteration_ > 0 && this->currentMcmcIteration_%100 == 0 && showProgress ){
-            clog << "\r" << " MCMC step" << setw(4) << int(currentMcmcIteration_ * 100 / this->maxIteration_) << "% completed."<<flush;
+            #ifndef RBUILD
+                clog << "\r" << " MCMC step" << setw(4) << int(currentMcmcIteration_ * 100 / this->maxIteration_) << "% completed."<<flush;
+            #endif
         }
         this->sampleMcmcEvent(useIBD);
     }
-    clog << "\r" << " MCMC step" << setw(4) << 100 << "% completed."<<endl;
+    #ifndef RBUILD
+        clog << "\r" << " MCMC step" << setw(4) << 100 << "% completed."<<endl;
+    #endif
     this->mcmcSample_->hap = this->currentHap_;
 
     this->writeLastFwdProb(useIBD);