From 704b2b933b7a7f80277f0843236a6924526911ab Mon Sep 17 00:00:00 2001 From: LucaCilibrasi <37807618+LucaCilibrasi@users.noreply.github.com> Date: Sun, 23 May 2021 23:21:25 +0200 Subject: [PATCH] Big update, UFL projext. - Analyze files - Charts --- .gitignore | 4 +- backend/apis/__init__.py | 10 +- backend/apis/analyze_file.py | 467 +++++++++++ backend/apis/epitope.py | 108 --- backend/apis/ref_cov2.fasta | 429 ++++++++++ backend/apis/spike_annotations.tsv | 10 + backend/apis/ufl.py | 58 ++ backend/app.py | 97 ++- backend/requirements.txt | 18 - backend/utils.py | 676 ---------------- frontend/dist/favicon.ico | Bin 4286 -> 67646 bytes frontend/dist/index.html | 2 +- .../static/css/chunk-vendors.2a8ac01d.css | 5 - frontend/dist/static/img/logo.63a7d78d.svg | 1 - frontend/dist/static/js/app.7b248217.js | 2 - frontend/dist/static/js/app.7b248217.js.map | 1 - .../dist/static/js/chunk-vendors.84a48fc6.js | 15 - .../static/js/chunk-vendors.84a48fc6.js.map | 1 - frontend/package-lock.json | 754 +++++++++++++++--- frontend/package.json | 9 +- frontend/public/favicon.ico | Bin 4286 -> 67646 bytes frontend/public/index.html | 5 +- frontend/src/App.vue | 47 +- frontend/src/components/BarSeqChart.vue | 175 ++++ frontend/src/components/ChoosingPage.vue | 48 ++ frontend/src/components/HelloWorld.vue | 151 ---- frontend/src/components/LoadPage.vue | 215 +++++ frontend/src/components/MetadataBarChart.vue | 194 +++++ frontend/src/components/MetadataPage.vue | 232 ++++++ frontend/src/components/MetadataPieChart.vue | 146 ++++ frontend/src/components/StatisticsPage.vue | 277 +++++++ frontend/src/main.js | 15 +- frontend/src/router.js | 19 + frontend/src/store.js | 79 ++ 34 files changed, 3085 insertions(+), 1185 deletions(-) create mode 100644 backend/apis/analyze_file.py delete mode 100644 backend/apis/epitope.py create mode 100644 backend/apis/ref_cov2.fasta create mode 100644 backend/apis/spike_annotations.tsv create mode 100644 backend/apis/ufl.py delete mode 100644 backend/requirements.txt delete mode 100644 frontend/dist/static/css/chunk-vendors.2a8ac01d.css delete mode 100644 frontend/dist/static/img/logo.63a7d78d.svg delete mode 100644 frontend/dist/static/js/app.7b248217.js delete mode 100644 frontend/dist/static/js/app.7b248217.js.map delete mode 100644 frontend/dist/static/js/chunk-vendors.84a48fc6.js delete mode 100644 frontend/dist/static/js/chunk-vendors.84a48fc6.js.map create mode 100644 frontend/src/components/BarSeqChart.vue create mode 100644 frontend/src/components/ChoosingPage.vue delete mode 100644 frontend/src/components/HelloWorld.vue create mode 100644 frontend/src/components/LoadPage.vue create mode 100644 frontend/src/components/MetadataBarChart.vue create mode 100644 frontend/src/components/MetadataPage.vue create mode 100644 frontend/src/components/MetadataPieChart.vue create mode 100644 frontend/src/components/StatisticsPage.vue create mode 100644 frontend/src/router.js create mode 100644 frontend/src/store.js diff --git a/.gitignore b/.gitignore index 4cb473b..be0abd9 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,4 @@ # Project exclude paths -/frontend/node_modules/ \ No newline at end of file +/frontend/node_modules/ +.idea +venv \ No newline at end of file diff --git a/backend/apis/__init__.py b/backend/apis/__init__.py index c9dedc7..0d7aa35 100755 --- a/backend/apis/__init__.py +++ b/backend/apis/__init__.py @@ -1,18 +1,20 @@ from flask import Blueprint from flask_restplus import Api -from .epitope import api as epitope_api +from .ufl import api as ufl +from .analyze_file import api as analyze_file enable_doc = True api_blueprint = Blueprint('api', __name__) if enable_doc: - api = Api(title='ViruSurf API', version='1.0', description='TODO', ) + api = Api(title='UFL API', version='1.0', description='TODO', ) else: - api = Api(title='ViruSurf API', version='1.0', description='TODO', doc=False) + api = Api(title='UFL API', version='1.0', description='TODO', doc=False) api.init_app(api_blueprint, add_specs=enable_doc) -api.add_namespace(epitope_api) +api.add_namespace(ufl) +api.add_namespace(analyze_file) diff --git a/backend/apis/analyze_file.py b/backend/apis/analyze_file.py new file mode 100644 index 0000000..6c05908 --- /dev/null +++ b/backend/apis/analyze_file.py @@ -0,0 +1,467 @@ +from __future__ import print_function +# %config Completer.use_jedi = False + +import requests +import io +import http.client +import json + +import pandas as pd +from collections import defaultdict +from Bio import SeqIO +from io import StringIO +from Bio import Align, Seq, pairwise2 +from Bio.Data import CodonTable +import numpy as np +import itertools +import collections +import logomaker +import tqdm +import psycopg2 +import matplotlib.pyplot as plt + +from ipywidgets import interact, interactive, fixed, interact_manual +import ipywidgets as widgets +from IPython.core.display import HTML + +from flask_restplus import Namespace, Resource + + +api = Namespace('analyze_file', description='analyze_file') + + +######################################################################################################## + +@api.route('/firstAnalysis') +class FieldList(Resource): + @api.doc('first_analysis') + def post(self): + payload = api.payload + file_csv = payload.get('fileCSV') + + metadata = defaultdict(dict) + file_csv = io.StringIO(file_csv) + file_csv.readline() + + for line in file_csv: + s = line.strip().split(",") + cluster = s[0] + seq_id = s[1] + data = s[2] + label = s[4] + value = s[5] + + metadata[seq_id]['cluster'] = cluster + metadata[seq_id]["date"] = data + metadata[seq_id][label] = value + + # metadata = pd.DataFrame(metadata).T + + all_metadata = {} + + for line in metadata.items(): + for key, value in line[1].items(): + if key not in all_metadata: + all_metadata[key] = [] + found = False + for item in all_metadata[key]: + if value == item['name']: + item['value'] = item['value'] + 1 + found = True + if not found: + all_metadata[key].append({'name': value, 'value': 1}) + # if key == 'cluster': + # sorted(all_metadata[key]) + # else: + # all_metadata[key].sort() + + return all_metadata + + +@api.route('/secondAnalysis') +class FieldList(Resource): + @api.doc('second_analysis') + def post(self): + payload = api.payload + file_csv = payload.get('fileCSV') + file_fasta = payload.get('fileFASTA') + + protein = 'Spike (surface glycoprotein)' + + metadata = defaultdict(dict) + file_csv = io.StringIO(file_csv) + file_csv.readline() + + for line in file_csv: + s = line.strip().split(",") + cluster = s[0] + seq_id = s[1] + data = s[2] + label = s[4] + value = s[5] + + metadata[seq_id]['cluster'] = cluster + metadata[seq_id]["date"] = data + metadata[seq_id][label] = value + + metadata = pd.DataFrame(metadata).T + + fasta_io = StringIO(file_fasta) + + fasta_sequences = SeqIO.parse(fasta_io, "fasta") + l_fasta = list(fasta_sequences) + + #reference = str(SeqIO.parse('ref_cov2.fasta', 'fasta').__next__().seq).lower() + + spike_start, spike_stop, spike_aa = 21563, 25384, "MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" + + table = CodonTable.ambiguous_dna_by_id[1] + conversion_table = table.__dict__['forward_table'].__dict__['forward_table'] + conversion_table['TAA'] = "*" + conversion_table['TGA'] = "*" + conversion_table['TAG'] = "*" + + nuc = set(['A', 'C', 'G', 'T']) + + def n2aa(codon): + if 'N' in codon: + return 'X' + elif '-' in codon: + return "#" + elif len(set(codon).difference(nuc)) > 0: + return "X" + else: + return conversion_table[codon] + + def nseq2aaseq(seq): + iseq = seq.replace("---", "") + i = 0 + aaseq = "" + while i < len(iseq): + aaseq += n2aa(iseq[i:i + 3]) + i += 3 + + return aaseq + + table = CodonTable.ambiguous_dna_by_id[1] + + mut_dataset = [] + seqs_1_epi = [] + seqs_2_epi = [] + + for s in tqdm.tqdm(l_fasta): + aa_spike = nseq2aaseq(str(s.seq[spike_start - 1:spike_stop])) + alignment_aa = pairwise2.align.globalms(spike_aa, aa_spike, 3, -1, -3, -1) + l_mut = [] + + seqs_1_epi.append(alignment_aa[0].seqB[1185 - 1:1202]) + seqs_2_epi.append(alignment_aa[0].seqB[16:24]) + + for i, r, s in zip(range(1, len(alignment_aa[0].seqA) + 1), alignment_aa[0].seqA, alignment_aa[0].seqB): + if r != s and s != "X": + l_mut.append((i, r, s)) + mut_dataset.append(l_mut) + + mut_dict = [{'id': i, + "mut": mut, + "fs_flag": len([x for x in mut if x[2] == '#']) > 0 + } for i, mut in zip([x.id for x in l_fasta], mut_dataset)] + + metadata['mut'] = pd.DataFrame(mut_dict).set_index('id').mut + + metadata['fs_flag'] = pd.DataFrame(mut_dict).set_index('id').fs_flag + + list_pairs = sorted(list( + set([tuple(x) for x in metadata[['cluster', 'lineage']].values]))) + + mut_stats = {} + for c, l in list_pairs: + rows_m = metadata[(metadata['cluster'] == c) & (metadata['lineage'] == l)] + samples = rows_m.shape[0] + + mut = list(rows_m['mut'].values) + mut_counts = collections.Counter([item for sublist in mut for item in sublist]) + + mut_stats[(c, l)] = (samples, mut_counts) + + url = 'http://geco.deib.polimi.it/virusurf_epitope/api/epitope/statisticsMutationsLineages' + + conn = http.client.HTTPConnection('geco.deib.polimi.it') + + headers = {'Content-type': 'application/json'} + + foo = list_pairs + json_data = json.dumps(foo) + + # conn.request('POST', '/virusurf_epitope/api/epitope/statisticsMutationsLineages', json_data, headers) + + conn.request('GET', '/virusurf_epitope/api/epitope/statisticsMutationsLineagesGET') + + response = conn.getresponse() + lineage_stats = response.read().decode() + + lineage_stats = json.loads(lineage_stats) + + # lineage_stats = requests.post(url, data=list_pairs) + # lineage_stats = lineage_stats.text + list_data_mut_table = [] + for (c, l), (n, cnt) in list(mut_stats.items()): + for m in cnt.keys(): + l1 = str(l) + m1 = str(m) + if l not in lineage_stats: + lineage_stats[l1] = {} + m2 = m1.replace(")", f", '{protein}')") + cnt_c = cnt[m] + frq_l = lineage_stats[l1].get(m2, 0) + frq_c = cnt_c / n + fc = frq_c / (frq_l + 0.000001) + + list_data_mut_table.append((c, l, m, cnt_c, frq_l, frq_c, fc)) + + mut_table = pd.DataFrame(list_data_mut_table, columns=["cluster", + "lineage", + 'mutation', + "# cluster", + "% lineage", + "% cluster", + "FC"]) + + def select_pair(c_l, fc): + c, l = tuple(c_l.split()) + res = mut_table[(mut_table['cluster'] == c) & (mut_table['lineage'] == l) & (mut_table['FC'] > fc)] + res = res[res.columns[2:]].reset_index(drop=True) + # display(res) + return res + + # interact(lambda x : select_pair(x), x=[c+" "+l for c,l in list_pairs]); + + # interactive(select_pair,c_l=[c + " " + l for c, l in list_pairs],fc=(0.0, 5.0, 0.5)) + + def select_cluster(c): + cluster = metadata[metadata['cluster'] == c] + mut_list = [item for sublist in list(cluster.mut) for item in sublist] + all_mut = set(mut_list) + all_lineages = collections.Counter(list(cluster['lineage'])) + num_sequences = cluster.shape[0] + epitopes = [(x, + x - 6, + x + 6, + spike_aa[x - 6 - 1:x + 6], + len([p for p, _, _ in mut_list if x - 6 <= p <= x + 6]), + len([p for p, _, _ in mut_list if x - 6 <= p <= x + 6]) / num_sequences, + o, + a + ) for x, o, a in all_mut] + + epitopes2 = [] + + for e in epitopes: + mut_lin_epitope = defaultdict(int) + for lin, cnt in all_lineages.items(): + mut_lin = [(perc * cnt / num_sequences, (p, o, a)) for (p, o, a), perc in lineage_stats[lin].items() + if e[1] <= p <= e[2]] + for perc, (p, o, a) in mut_lin: + mut_lin_epitope[f'{o}{p}{a}'] += perc + + epitopes2.append((e, + sorted( + list(mut_lin_epitope.items()), + key=lambda x: x[1], + reverse=True + ))) + + def format_mut(xs): + return "; ".join([f'{x[0]}:{x[1] * 100:.1f}%' for x in xs]) + + res = pd.DataFrame([{"seq": e[0][3], + "cluster_mut": f'{e[0][-2]}{e[0][0]}{e[0][-1]}', + "#cluster": e[0][4], + "%cluster": int(e[0][5] * 10000) / 100, + "avg. mut lineage(s)": format_mut(e[1]) + } for e in epitopes2]) + + res = res.sort_values('#cluster', ascending=False).reset_index(drop=True) + # display(res) + + return res + + # interactive(select_cluster, c=sorted(set([c for c, l in list_pairs]))) + + #epitopes = requests.get("http://geco.deib.polimi.it/virusurf_epitope/api/epitope/allEpitopes") + #epitopes = epitopes.json() + + #epitopes = json.loads(epitopes) + + conn = http.client.HTTPConnection('geco.deib.polimi.it') + + conn.request('GET', '/virusurf_epitope/api/epitope/allEpitopes') + + response_epi = conn.getresponse() + epitopes = response_epi.read().decode() + + epitopes = json.loads(epitopes) + + epitopes = pd.DataFrame.from_dict(epitopes, orient='columns') + + selected_mut = mut_table[(mut_table['# cluster'] > 1) & (mut_table['% lineage'] < 0.01)] + + def enrich_mutations(m): + selected_epitopes = epitopes[ + (epitopes['epi_frag_annotation_start'] <= m[0]) & (epitopes['epi_frag_annotation_stop'] >= m[0])] + selected_linear = selected_epitopes[selected_epitopes.is_linear] + selected_nonlin = selected_epitopes[~selected_epitopes.is_linear] + s_min = selected_linear.epi_annotation_start.min() + s_max = selected_linear.epi_annotation_stop.max() + epi_seq = spike_aa[s_min - 1:s_max] + publications_linear = list(set(list(itertools.chain(*list(selected_linear.pubs))))) + publications_nonlin = list(set(list(itertools.chain(*list(selected_nonlin.pubs))))) + + return (s_min, + s_max, + epi_seq, + selected_linear.shape[0], + selected_nonlin.shape[0], + publications_linear, + publications_nonlin, + len(publications_linear), + len(publications_nonlin)) + + mut_table[["epi_start", "epi_stop", "epi_seq", "#linear", "#non-linear", "pubs linear", "pubs non-linear", + "#pubs linear", "#pubs non-linear"]] = pd.DataFrame( + mut_table.mutation.apply(enrich_mutations).tolist(), index=mut_table.index) + + def create_filter(m): + return lambda x: m in x + + def find_sequences(x): + c = x.cluster + m = x.mutation + l = x.lineage + return list(metadata[metadata.mut.apply(create_filter(m)) & (metadata.cluster == c) & ( + metadata.lineage == l)].index) + + mut_table['sequences'] = mut_table.apply(find_sequences, axis=1) + + annotations = pd.read_csv("/Users/LucaCillo/Desktop/UFL project/backend/apis/spike_annotations.tsv", delimiter='\t') + + def find_annotation(m): + return list(annotations[(annotations.Start <= m[0]) & (annotations.Stop >= m[0])].Annotation) + + mut_table['annotations'] = mut_table.mutation.apply(find_annotation) + + res = mut_table + + # res = res.to_json(orient='records', lines=True).splitlines() + + list_dict = [] + for index, row in list(res.iterrows()): + list_dict.append(dict(row)) + + + # list_dict = [{'cluster': 'c101', 'lineage': 'B.1', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.9960946785750671, '% cluster': 1.0, 'FC': 1.0039196249004092, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GP-5671/2020|EPI_ISL_700516|2020-05-14|Africa', 'hCoV-19/South_Africa/KRISP-K004596/2020|EPI_ISL_660626|2020-11-07|Africa', 'hCoV-19/South_Africa/KRISP-K003709/2020|EPI_ISL_602889|2020-10-05|Africa', 'hCoV-19/South_Africa/KRISP-K002882/2020|EPI_ISL_602694|2020-09-03|Africa', 'hCoV-19/South_Africa/KRISP-K002818/2020|EPI_ISL_602639|2020-09-02|Africa', 'hCoV-19/South_Africa/KRISP-K002733/2020|EPI_ISL_529731|2020-08-16|Africa', 'hCoV-19/South_Africa/KRISP-K002472/2020|EPI_ISL_518051|2020-07-14|Africa'], 'annotations': []}, {'cluster': 'c103', 'lineage': 'B.1.243', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.9984247834077186, '% cluster': 1.0, 'FC': 1.001576698657469, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/USA/HI-H200472/2020|EPI_ISL_753015|2020-10-10|NorthAmerica', 'hCoV-19/USA/HI-H200284/2020|EPI_ISL_752843|2020-09-10|NorthAmerica', 'hCoV-19/USA/HI-H200329/2020|EPI_ISL_752887|2020-08-20|NorthAmerica', 'hCoV-19/USA/HI-H200259/2020|EPI_ISL_752818|2020-08-25|NorthAmerica', 'hCoV-19/USA/HI-H200355/2020|EPI_ISL_752911|2020-09-23|NorthAmerica', 'hCoV-19/USA/TX-HMH-MCoV-12473/2020|EPI_ISL_790355|2020-09-28|NorthAmerica', 'hCoV-19/USA/TX-HMH-MCoV-15230/2020|EPI_ISL_786714|2020-10-19|NorthAmerica'], 'annotations': []}, {'cluster': 'c103', 'lineage': 'B.1.243', 'mutation': (681, 'P', 'H'), '# cluster': 7, '% lineage': 0.5760042005775794, '% cluster': 1.0, 'FC': 1.7360954362864554, 'epi_start': 647, 'epi_stop': 698, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMS', '#linear': 42, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 12, '#pubs non-linear': 0, 'sequences': ['hCoV-19/USA/HI-H200472/2020|EPI_ISL_753015|2020-10-10|NorthAmerica', 'hCoV-19/USA/HI-H200284/2020|EPI_ISL_752843|2020-09-10|NorthAmerica', 'hCoV-19/USA/HI-H200329/2020|EPI_ISL_752887|2020-08-20|NorthAmerica', 'hCoV-19/USA/HI-H200259/2020|EPI_ISL_752818|2020-08-25|NorthAmerica', 'hCoV-19/USA/HI-H200355/2020|EPI_ISL_752911|2020-09-23|NorthAmerica', 'hCoV-19/USA/TX-HMH-MCoV-12473/2020|EPI_ISL_790355|2020-09-28|NorthAmerica', 'hCoV-19/USA/TX-HMH-MCoV-15230/2020|EPI_ISL_786714|2020-10-19|NorthAmerica'], 'annotations': []}, {'cluster': 'c114', 'lineage': 'B.1.240', 'mutation': (614, 'D', 'G'), '# cluster': 11, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/USA/MN-MDH-1821/2020|EPI_ISL_602956|2020-08-09|NorthAmerica', 'hCoV-19/USA/AZ-TG547355/2020|EPI_ISL_695501|2020-07-07|NorthAmerica', 'hCoV-19/USA/TX-HMH-MCoV-15790/2020|EPI_ISL_785474|2020-07-10|NorthAmerica', 'hCoV-19/USA/LA-EVTL842/2020|EPI_ISL_653533|2020-07-28|NorthAmerica', 'hCoV-19/USA/TX-HMH-MCoV-13212/2020|EPI_ISL_788363|2020-08-25|NorthAmerica', 'hCoV-19/USA/PA-MGEL-00700/2020|EPI_ISL_682031|2020-10-06|NorthAmerica', 'hCoV-19/USA/PA-MGEL-00714/2020|EPI_ISL_682041|2020-10-13|NorthAmerica', 'hCoV-19/USA/LA-CDC-2-3693761/2020|EPI_ISL_747072|2020-11-04|NorthAmerica', 'hCoV-19/USA/AZ-TG456402/2020|EPI_ISL_695043|2020-06-26|NorthAmerica', 'hCoV-19/England/MILK-9A88DC/2020|EPI_ISL_549430|2020-09-01|Europe', 'hCoV-19/USA/MD-MDH-0292/2020|EPI_ISL_629072|2020-10-13|NorthAmerica'], 'annotations': []}, {'cluster': 'c114', 'lineage': 'B.1.240', 'mutation': (785, 'V', 'L'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.09090909090909091, 'FC': 90909.09090909091, 'epi_start': 760, 'epi_stop': 814, 'epi_seq': 'CTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK', '#linear': 37, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 12, '#pubs non-linear': 0, 'sequences': ['hCoV-19/USA/LA-EVTL842/2020|EPI_ISL_653533|2020-07-28|NorthAmerica'], 'annotations': []}, {'cluster': 'c114', 'lineage': 'B.1.240', 'mutation': (1118, 'D', 'A'), '# cluster': 1, '% lineage': 0.0040941658137154556, '% cluster': 0.09090909090909091, 'FC': 22.199123318674868, 'epi_start': 1105, 'epi_stop': 1131, 'epi_seq': 'TQRNFYEPQIITTDNTFVSGNCDVVIG', '#linear': 17, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/USA/LA-CDC-2-3693761/2020|EPI_ISL_747072|2020-11-04|NorthAmerica'], 'annotations': []}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (18, 'L', 'F'), '# cluster': 8, '% lineage': 0.37103594080338265, '% cluster': 1.0, 'FC': 2.6951494313066613, 'epi_start': 1, 'epi_stop': 34, 'epi_seq': 'MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTR', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 4, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 8, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 8, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 8, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 8, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 8, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 8, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 8, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 8, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 8, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': []}, {'cluster': 'c12', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 8, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-392/2020|EPI_ISL_745156|2020-12-02|Africa', 'hCoV-19/Germany/BW-ChVir22275/2021|EPI_ISL_875344|2021-01-15|Europe', 'hCoV-19/South_Africa/Tygerberg-406/2020|EPI_ISL_745160|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-405/2020|EPI_ISL_745130|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-396/2020|EPI_ISL_745157|2020-12-03|Africa', 'hCoV-19/South_Africa/Tygerberg-408/2020|EPI_ISL_745161|2020-12-04|Africa', 'hCoV-19/South_Africa/Tygerberg-390/2020|EPI_ISL_745155|2020-12-02|Africa', 'hCoV-19/South_Africa/Tygerberg-429/2020|EPI_ISL_745167|2020-12-06|Africa'], 'annotations': []}, {'cluster': 'c122', 'lineage': 'B.1', 'mutation': (614, 'D', 'G'), '# cluster': 8, '% lineage': 0.9960946785750671, '% cluster': 1.0, 'FC': 1.0039196249004092, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002314/2020|EPI_ISL_515690|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002315/2020|EPI_ISL_515691|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002317/2020|EPI_ISL_515693|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002342/2020|EPI_ISL_515715|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002260/2020|EPI_ISL_515645|2020-07-16|Africa', 'hCoV-19/South_Africa/KRISP-K002320/2020|EPI_ISL_515696|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K001063/2020|EPI_ISL_509319|2020-07-03|Africa', 'hCoV-19/South_Africa/R13300-20/2020|EPI_ISL_622909|2020-06-30|Africa'], 'annotations': []}, {'cluster': 'c122', 'lineage': 'B.1', 'mutation': (1134, 'N', 'H'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.25, 'FC': 250000.0, 'epi_start': 1121, 'epi_stop': 1147, 'epi_seq': 'FVSGNCDVVIGIVNNTVYDPLQPELDS', '#linear': 9, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 5, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002315/2020|EPI_ISL_515691|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002317/2020|EPI_ISL_515693|2020-07-22|Africa'], 'annotations': []}, {'cluster': 'c125', 'lineage': 'B.1.381', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K000636/2020|EPI_ISL_509286|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K000574/2020|EPI_ISL_509230|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K000651/2020|EPI_ISL_509295|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K001092/2020|EPI_ISL_509343|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K000654/2020|EPI_ISL_509297|2020-07-13|Africa'], 'annotations': []}, {'cluster': 'c126', 'lineage': 'B.1.381', 'mutation': (614, 'D', 'G'), '# cluster': 6, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/LR00080/2020|EPI_ISL_514391|2020-07-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1648/2020|EPI_ISL_700493|2020-08-17|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2284/2020|EPI_ISL_700577|2020-08-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0024/2020|EPI_ISL_640025|2020-08-14|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1772/2020|EPI_ISL_640108|2020-09-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1695/2020|EPI_ISL_700507|2020-08-19|Africa'], 'annotations': []}, {'cluster': 'c126', 'lineage': 'B.1.381', 'mutation': (1163, 'D', 'Y'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.16666666666666666, 'FC': 166666.66666666666, 'epi_start': 1135, 'epi_stop': 1184, 'epi_seq': 'NTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID', '#linear': 12, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037435'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1695/2020|EPI_ISL_700507|2020-08-19|Africa'], 'annotations': ['heptapeptide repeat sequence 2']}, {'cluster': 'c128', 'lineage': 'B.1.381', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-0690/2020|EPI_ISL_700476|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0960/2020|EPI_ISL_700569|2020-10-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0958/2020|EPI_ISL_700519|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1371/2020|EPI_ISL_700583|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1368/2020|EPI_ISL_700474|2020-11-12|Africa'], 'annotations': []}, {'cluster': 'c128', 'lineage': 'B.1.381', 'mutation': (701, 'A', 'V'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-0690/2020|EPI_ISL_700476|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0960/2020|EPI_ISL_700569|2020-10-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0958/2020|EPI_ISL_700519|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1371/2020|EPI_ISL_700583|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1368/2020|EPI_ISL_700474|2020-11-12|Africa'], 'annotations': []}, {'cluster': 'c129', 'lineage': 'B.1.381', 'mutation': (218, 'Q', 'E'), '# cluster': 10, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 200, 'epi_stop': 234, 'epi_seq': 'YFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGIN', '#linear': 30, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065'], '#pubs linear': 12, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1874/2020|EPI_ISL_640118|2020-09-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2030/2020|EPI_ISL_640122|2020-09-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1026/2020|EPI_ISL_700497|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0657/2020|EPI_ISL_700538|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0663/2020|EPI_ISL_700557|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0636/2020|EPI_ISL_700556|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1027/2020|EPI_ISL_700533|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0641/2020|EPI_ISL_700536|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7004-KRISP/2020|EPI_ISL_696468|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7030-KRISP/2020|EPI_ISL_696509|2020-11-24|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c129', 'lineage': 'B.1.381', 'mutation': (614, 'D', 'G'), '# cluster': 10, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1874/2020|EPI_ISL_640118|2020-09-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2030/2020|EPI_ISL_640122|2020-09-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1026/2020|EPI_ISL_700497|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0657/2020|EPI_ISL_700538|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0663/2020|EPI_ISL_700557|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0636/2020|EPI_ISL_700556|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1027/2020|EPI_ISL_700533|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0641/2020|EPI_ISL_700536|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7004-KRISP/2020|EPI_ISL_696468|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7030-KRISP/2020|EPI_ISL_696509|2020-11-24|Africa'], 'annotations': []}, {'cluster': 'c129', 'lineage': 'B.1.381', 'mutation': (69, 'H', 'Y'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.1, 'FC': 100000.00000000001, 'epi_start': 54, 'epi_stop': 85, 'epi_seq': 'LFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLP', '#linear': 12, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065'], '#pubs linear': 6, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-0636/2020|EPI_ISL_700556|2020-10-19|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c129', 'lineage': 'B.1.381', 'mutation': (946, 'G', 'R'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.1, 'FC': 100000.00000000001, 'epi_start': 906, 'epi_stop': 968, 'epi_seq': 'FNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-7004-KRISP/2020|EPI_ISL_696468|2020-11-18|Africa'], 'annotations': ['heptapeptide repeat sequence 1']}, {'cluster': 'c131', 'lineage': 'B.1.237', 'mutation': (222, 'A', 'V'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 204, 'epi_stop': 235, 'epi_seq': 'YSKHTPINLVRDLPQGFSALEPLVDLPIGINI', '#linear': 23, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/Tygerberg-453/2020|EPI_ISL_745140|2020-12-07|Africa', 'hCoV-19/South_Africa/Tygerberg-432/2020|EPI_ISL_745190|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1391-KRISP/2020|EPI_ISL_696464|2020-11-19|Africa', 'hCoV-19/South_Africa/N00362/2020|EPI_ISL_712078|2020-09-29|Africa', 'hCoV-19/South_Africa/N00360/2020|EPI_ISL_712077|2020-09-29|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c131', 'lineage': 'B.1.237', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/Tygerberg-453/2020|EPI_ISL_745140|2020-12-07|Africa', 'hCoV-19/South_Africa/Tygerberg-432/2020|EPI_ISL_745190|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1391-KRISP/2020|EPI_ISL_696464|2020-11-19|Africa', 'hCoV-19/South_Africa/N00362/2020|EPI_ISL_712078|2020-09-29|Africa', 'hCoV-19/South_Africa/N00360/2020|EPI_ISL_712077|2020-09-29|Africa'], 'annotations': []}, {'cluster': 'c131', 'lineage': 'B.1.237', 'mutation': (701, 'A', 'V'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-453/2020|EPI_ISL_745140|2020-12-07|Africa', 'hCoV-19/South_Africa/Tygerberg-432/2020|EPI_ISL_745190|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1391-KRISP/2020|EPI_ISL_696464|2020-11-19|Africa', 'hCoV-19/South_Africa/N00362/2020|EPI_ISL_712078|2020-09-29|Africa', 'hCoV-19/South_Africa/N00360/2020|EPI_ISL_712077|2020-09-29|Africa'], 'annotations': []}, {'cluster': 'c131', 'lineage': 'B.1.237', 'mutation': (676, 'T', 'I'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.4, 'FC': 400000.00000000006, 'epi_start': 647, 'epi_stop': 695, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAY', '#linear': 22, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/N00362/2020|EPI_ISL_712078|2020-09-29|Africa', 'hCoV-19/South_Africa/N00360/2020|EPI_ISL_712077|2020-09-29|Africa'], 'annotations': []}, {'cluster': 'c133', 'lineage': 'A', 'mutation': (453, 'Y', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.16666666666666666, 'FC': 166666.66666666666, 'epi_start': 425, 'epi_stop': 467, 'epi_seq': 'LPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERD', '#linear': 57, '#non-linear': 35, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037085', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 16, '#pubs non-linear': 21, 'sequences': ['hCoV-19/South_Africa/KRISP-0267/2020|EPI_ISL_482854|2020-06-17|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c133', 'lineage': 'A', 'mutation': (809, 'P', 'S'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.3333333333333333, 'FC': 333333.3333333333, 'epi_start': 779, 'epi_stop': 837, 'epi_seq': 'QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQY', '#linear': 35, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 14, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0267/2020|EPI_ISL_482854|2020-06-17|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2931/2020|EPI_ISL_700481|2020-05-09|Africa'], 'annotations': []}, {'cluster': 'c133', 'lineage': 'A', 'mutation': (946, 'G', 'R'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.3333333333333333, 'FC': 333333.3333333333, 'epi_start': 906, 'epi_stop': 968, 'epi_seq': 'FNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0267/2020|EPI_ISL_482854|2020-06-17|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2931/2020|EPI_ISL_700481|2020-05-09|Africa'], 'annotations': ['heptapeptide repeat sequence 1']}, {'cluster': 'c133', 'lineage': 'A', 'mutation': (330, 'P', 'S'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.3333333333333333, 'FC': 333333.3333333333, 'epi_start': 313, 'epi_stop': 359, 'epi_seq': 'YQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRIS', '#linear': 16, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/United_Arab_Emirates/0891/2020|EPI_ISL_699029|2020-06-25|Asia', 'hCoV-19/United_Arab_Emirates/0720/2020|EPI_ISL_698871|2020-05-19|Asia'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c133', 'lineage': 'A', 'mutation': (1176, 'V', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.16666666666666666, 'FC': 166666.66666666666, 'epi_start': 1155, 'epi_stop': 1207, 'epi_seq': 'YFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE', '#linear': 32, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/United_Arab_Emirates/0891/2020|EPI_ISL_699029|2020-06-25|Asia'], 'annotations': ['heptapeptide repeat sequence 2']}, {'cluster': 'c133', 'lineage': 'A', 'mutation': (684, 'A', 'S'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.16666666666666666, 'FC': 166666.66666666666, 'epi_start': 647, 'epi_stop': 726, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 41, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 12, '#pubs non-linear': 0, 'sequences': ['hCoV-19/United_Arab_Emirates/0720/2020|EPI_ISL_698871|2020-05-19|Asia'], 'annotations': []}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (18, 'L', 'F'), '# cluster': 5, '% lineage': 0.37103594080338265, '% cluster': 1.0, 'FC': 2.6951494313066613, 'epi_start': 1, 'epi_stop': 34, 'epi_seq': 'MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTR', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 4, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 5, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 5, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 5, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 5, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 5, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 5, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 5, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 5, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': []}, {'cluster': 'c14', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 5, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-DG01843206/2020|EPI_ISL_736951|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01843213/2020|EPI_ISL_736952|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K005311/2020|EPI_ISL_678604|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-DG01843056/2020|EPI_ISL_736949|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-DG01842216/2020|EPI_ISL_736947|2020-11-25|Africa'], 'annotations': []}, {'cluster': 'c149', 'lineage': 'B.1.1.254', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002681/2020|EPI_ISL_535545|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K002673/2020|EPI_ISL_535539|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K002684/2020|EPI_ISL_535547|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K001344/2020|EPI_ISL_515829|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002545/2020|EPI_ISL_535415|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K002678/2020|EPI_ISL_535542|2020-08-03|Africa', 'hCoV-19/South_Africa/KRISP-K002867/2020|EPI_ISL_602681|2020-08-29|Africa'], 'annotations': []}, {'cluster': 'c149', 'lineage': 'B.1.1.254', 'mutation': (809, 'P', 'L'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.14285714285714285, 'FC': 142857.14285714287, 'epi_start': 779, 'epi_stop': 837, 'epi_seq': 'QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQY', '#linear': 35, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 14, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002867/2020|EPI_ISL_602681|2020-08-29|Africa'], 'annotations': []}, {'cluster': 'c151', 'lineage': 'B.1.1.254', 'mutation': (614, 'D', 'G'), '# cluster': 8, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K000655/2020|EPI_ISL_509298|2020-07-12|Africa', 'hCoV-19/South_Africa/KRISP-K003322/2020|EPI_ISL_602715|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K002816/2020|EPI_ISL_602637|2020-08-21|Africa', 'hCoV-19/South_Africa/KRISP-0538/2020|EPI_ISL_498080|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-K002903/2020|EPI_ISL_602714|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K003689/2020|EPI_ISL_602871|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K003730/2020|EPI_ISL_602908|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K003733/2020|EPI_ISL_602911|2020-10-06|Africa'], 'annotations': []}, {'cluster': 'c151', 'lineage': 'B.1.1.254', 'mutation': (522, 'A', 'E'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.125, 'FC': 125000.0, 'epi_start': 499, 'epi_stop': 541, 'epi_seq': 'PTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 17, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K003733/2020|EPI_ISL_602911|2020-10-06|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c153', 'lineage': 'B.1', 'mutation': (614, 'D', 'G'), '# cluster': 2, '% lineage': 0.9960946785750671, '% cluster': 1.0, 'FC': 1.0039196249004092, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-2092/2020|EPI_ISL_640084|2020-09-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2093/2020|EPI_ISL_640085|2020-09-25|Africa'], 'annotations': []}, {'cluster': 'c153', 'lineage': 'B.1.1.254', 'mutation': (614, 'D', 'G'), '# cluster': 17, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004037/2020|EPI_ISL_635018|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2085/2020|EPI_ISL_640128|2020-09-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3519/2020|EPI_ISL_640140|2020-10-10|Africa', 'hCoV-19/South_Africa/KRISP-K004315/2020|EPI_ISL_660192|2020-10-27|Africa', 'hCoV-19/South_Africa/KRISP-K004553/2020|EPI_ISL_660250|2020-10-27|Africa', 'hCoV-19/South_Africa/KRISP-K004536/2020|EPI_ISL_660234|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004330/2020|EPI_ISL_660206|2020-10-24|Africa', 'hCoV-19/South_Africa/KRISP-K004325/2020|EPI_ISL_660201|2020-10-27|Africa', 'hCoV-19/South_Africa/KRISP-K004552/2020|EPI_ISL_660249|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2022/2020|EPI_ISL_640119|2020-09-14|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3522/2020|EPI_ISL_640141|2020-10-11|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920916/2020|EPI_ISL_736927|2020-12-07|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920913/2020|EPI_ISL_736995|2020-12-07|Africa', 'hCoV-19/South_Africa/KRISP-K004723-CS1/2020|EPI_ISL_660256|2020-11-18|Africa', 'hCoV-19/South_Africa/KRISP-K004534-CS1/2020|EPI_ISL_660232|2020-11-17|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3468/2020|EPI_ISL_640133|2020-10-01|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3469/2020|EPI_ISL_640134|2020-10-01|Africa'], 'annotations': []}, {'cluster': 'c153', 'lineage': 'B.1.1.254', 'mutation': (1237, 'M', 'I'), '# cluster': 6, '% lineage': 0.0, '% cluster': 0.35294117647058826, 'FC': 352941.17647058825, 'epi_start': 1202, 'epi_stop': 1255, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-3522/2020|EPI_ISL_640141|2020-10-11|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920916/2020|EPI_ISL_736927|2020-12-07|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920913/2020|EPI_ISL_736995|2020-12-07|Africa', 'hCoV-19/South_Africa/KRISP-K004723-CS1/2020|EPI_ISL_660256|2020-11-18|Africa', 'hCoV-19/South_Africa/KRISP-K004534-CS1/2020|EPI_ISL_660232|2020-11-17|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3469/2020|EPI_ISL_640134|2020-10-01|Africa'], 'annotations': ['TM domain', 'cytoplasm domain']}, {'cluster': 'c153', 'lineage': 'B.1.1.254', 'mutation': (701, 'A', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.058823529411764705, 'FC': 58823.529411764706, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-MDSH920916/2020|EPI_ISL_736927|2020-12-07|Africa'], 'annotations': []}, {'cluster': 'c153', 'lineage': 'B.1.1.254', 'mutation': (1208, 'Q', 'H'), '# cluster': 4, '% lineage': 0.0, '% cluster': 0.23529411764705882, 'FC': 235294.11764705883, 'epi_start': 1193, 'epi_stop': 1244, 'epi_seq': 'LNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCL', '#linear': 27, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037576', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037085', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037941', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 17, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-MDSH920916/2020|EPI_ISL_736927|2020-12-07|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920913/2020|EPI_ISL_736995|2020-12-07|Africa', 'hCoV-19/South_Africa/KRISP-K004723-CS1/2020|EPI_ISL_660256|2020-11-18|Africa', 'hCoV-19/South_Africa/KRISP-K004534-CS1/2020|EPI_ISL_660232|2020-11-17|Africa'], 'annotations': ['heptapeptide repeat sequence 2']}, {'cluster': 'c153', 'lineage': 'B.1.1.269', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 0.996742671009772, '% cluster': 1.0, 'FC': 1.0032669673105916, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004586/2020|EPI_ISL_660616|2020-11-05|Africa'], 'annotations': []}, {'cluster': 'c163', 'lineage': 'B.1.1.119', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K001080/2020|EPI_ISL_509334|2020-07-01|Africa', 'hCoV-19/South_Africa/KRISP-K001098/2020|EPI_ISL_509347|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001100/2020|EPI_ISL_509349|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K002829/2020|EPI_ISL_602649|2020-09-01|Africa', 'hCoV-19/South_Africa/KRISP-K002805/2020|EPI_ISL_529799|2020-08-24|Africa'], 'annotations': []}, {'cluster': 'c163', 'lineage': 'B.1.1.119', 'mutation': (178, 'D', 'N'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.4, 'FC': 400000.00000000006, 'epi_start': 161, 'epi_stop': 194, 'epi_seq': 'SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVF', '#linear': 32, '#non-linear': 3, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1036944'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-K002829/2020|EPI_ISL_602649|2020-09-01|Africa', 'hCoV-19/South_Africa/KRISP-K002805/2020|EPI_ISL_529799|2020-08-24|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c176', 'lineage': 'B.1.1.117', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002398/2020|EPI_ISL_515762|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K004538/2020|EPI_ISL_660236|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K003490/2020|EPI_ISL_602820|2020-09-14|Africa', 'hCoV-19/South_Africa/KRISP-K003323/2020|EPI_ISL_602716|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K003327/2020|EPI_ISL_602720|2020-09-07|Africa'], 'annotations': []}, {'cluster': 'c176', 'lineage': 'B.1.1.117', 'mutation': (688, 'A', 'V'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 647, 'epi_stop': 726, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 41, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002398/2020|EPI_ISL_515762|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K004538/2020|EPI_ISL_660236|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K003490/2020|EPI_ISL_602820|2020-09-14|Africa', 'hCoV-19/South_Africa/KRISP-K003323/2020|EPI_ISL_602716|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K003327/2020|EPI_ISL_602720|2020-09-07|Africa'], 'annotations': []}, {'cluster': 'c176', 'lineage': 'B.1.1.117', 'mutation': (274, 'T', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.2, 'FC': 200000.00000000003, 'epi_start': 240, 'epi_stop': 302, 'epi_seq': 'TLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCT', '#linear': 21, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037942', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037949', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037363', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037085', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1037935', 'http://www.iedb.org/reference/1038013', 'http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1037576', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037971', 'http://www.iedb.org/reference/1037941', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 23, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004538/2020|EPI_ISL_660236|2020-10-18|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c182', 'lineage': 'B.1.1.119', 'mutation': (154, 'E', 'Q'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.5, 'FC': 500000.0, 'epi_start': 129, 'epi_stop': 171, 'epi_seq': 'KVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYV', '#linear': 15, '#non-linear': 4, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 8, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K003521/2020|EPI_ISL_602840|2020-09-27|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c182', 'lineage': 'B.1.1.119', 'mutation': (522, 'A', 'S'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.5, 'FC': 500000.0, 'epi_start': 499, 'epi_stop': 541, 'epi_seq': 'PTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 17, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K003521/2020|EPI_ISL_602840|2020-09-27|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c182', 'lineage': 'B.1.1.119', 'mutation': (614, 'D', 'G'), '# cluster': 2, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K003521/2020|EPI_ISL_602840|2020-09-27|Africa', 'hCoV-19/South_Africa/KRISP-K005323/2020|EPI_ISL_678613|2020-11-17|Africa'], 'annotations': []}, {'cluster': 'c182', 'lineage': 'B.1.1.119', 'mutation': (834, 'I', 'V'), '# cluster': 2, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 795, 'epi_stop': 874, 'epi_seq': 'KDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT', '#linear': 30, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K003521/2020|EPI_ISL_602840|2020-09-27|Africa', 'hCoV-19/South_Africa/KRISP-K005323/2020|EPI_ISL_678613|2020-11-17|Africa'], 'annotations': []}, {'cluster': 'c182', 'lineage': 'B.1.1.220', 'mutation': (614, 'D', 'G'), '# cluster': 13, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004587/2020|EPI_ISL_660617|2020-11-06|Africa', 'hCoV-19/South_Africa/KRISP-K004598/2020|EPI_ISL_660628|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004045/2020|EPI_ISL_635024|2020-10-15|Africa', 'hCoV-19/South_Africa/KRISP-K004546/2020|EPI_ISL_660243|2020-10-27|Africa', 'hCoV-19/South_Africa/KRISP-K004649/2020|EPI_ISL_660662|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K004602/2020|EPI_ISL_660631|2020-11-06|Africa', 'hCoV-19/South_Africa/KRISP-K005309/2020|EPI_ISL_678602|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004627/2020|EPI_ISL_660643|2020-11-01|Africa', 'hCoV-19/South_Africa/KRISP-CH01110731/2020|EPI_ISL_736926|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K004606/2020|EPI_ISL_660632|2020-11-08|Africa', 'hCoV-19/South_Africa/KRISP-K004635/2020|EPI_ISL_660651|2020-11-02|Africa', 'hCoV-19/South_Africa/KRISP-K004339/2020|EPI_ISL_660215|2020-10-28|Africa', 'hCoV-19/South_Africa/KRISP-K004609/2020|EPI_ISL_660634|2020-11-08|Africa'], 'annotations': []}, {'cluster': 'c182', 'lineage': 'B.1.1.220', 'mutation': (154, 'E', 'Q'), '# cluster': 12, '% lineage': 0.0, '% cluster': 0.9230769230769231, 'FC': 923076.9230769231, 'epi_start': 129, 'epi_stop': 171, 'epi_seq': 'KVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYV', '#linear': 15, '#non-linear': 4, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 8, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004598/2020|EPI_ISL_660628|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004045/2020|EPI_ISL_635024|2020-10-15|Africa', 'hCoV-19/South_Africa/KRISP-K004546/2020|EPI_ISL_660243|2020-10-27|Africa', 'hCoV-19/South_Africa/KRISP-K004649/2020|EPI_ISL_660662|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K004602/2020|EPI_ISL_660631|2020-11-06|Africa', 'hCoV-19/South_Africa/KRISP-K005309/2020|EPI_ISL_678602|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004627/2020|EPI_ISL_660643|2020-11-01|Africa', 'hCoV-19/South_Africa/KRISP-CH01110731/2020|EPI_ISL_736926|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K004606/2020|EPI_ISL_660632|2020-11-08|Africa', 'hCoV-19/South_Africa/KRISP-K004635/2020|EPI_ISL_660651|2020-11-02|Africa', 'hCoV-19/South_Africa/KRISP-K004339/2020|EPI_ISL_660215|2020-10-28|Africa', 'hCoV-19/South_Africa/KRISP-K004609/2020|EPI_ISL_660634|2020-11-08|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c182', 'lineage': 'B.1.1.220', 'mutation': (490, 'F', 'S'), '# cluster': 12, '% lineage': 0.0, '% cluster': 0.9230769230769231, 'FC': 923076.9230769231, 'epi_start': 467, 'epi_stop': 513, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 18, '#non-linear': 35, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037749', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 14, '#pubs non-linear': 29, 'sequences': ['hCoV-19/South_Africa/KRISP-K004598/2020|EPI_ISL_660628|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004045/2020|EPI_ISL_635024|2020-10-15|Africa', 'hCoV-19/South_Africa/KRISP-K004546/2020|EPI_ISL_660243|2020-10-27|Africa', 'hCoV-19/South_Africa/KRISP-K004649/2020|EPI_ISL_660662|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K004602/2020|EPI_ISL_660631|2020-11-06|Africa', 'hCoV-19/South_Africa/KRISP-K005309/2020|EPI_ISL_678602|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004627/2020|EPI_ISL_660643|2020-11-01|Africa', 'hCoV-19/South_Africa/KRISP-CH01110731/2020|EPI_ISL_736926|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K004606/2020|EPI_ISL_660632|2020-11-08|Africa', 'hCoV-19/South_Africa/KRISP-K004635/2020|EPI_ISL_660651|2020-11-02|Africa', 'hCoV-19/South_Africa/KRISP-K004339/2020|EPI_ISL_660215|2020-10-28|Africa', 'hCoV-19/South_Africa/KRISP-K004609/2020|EPI_ISL_660634|2020-11-08|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c182', 'lineage': 'B.1.1.220', 'mutation': (834, 'I', 'V'), '# cluster': 12, '% lineage': 0.0, '% cluster': 0.9230769230769231, 'FC': 923076.9230769231, 'epi_start': 795, 'epi_stop': 874, 'epi_seq': 'KDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT', '#linear': 30, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004598/2020|EPI_ISL_660628|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004045/2020|EPI_ISL_635024|2020-10-15|Africa', 'hCoV-19/South_Africa/KRISP-K004546/2020|EPI_ISL_660243|2020-10-27|Africa', 'hCoV-19/South_Africa/KRISP-K004649/2020|EPI_ISL_660662|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K004602/2020|EPI_ISL_660631|2020-11-06|Africa', 'hCoV-19/South_Africa/KRISP-K005309/2020|EPI_ISL_678602|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004627/2020|EPI_ISL_660643|2020-11-01|Africa', 'hCoV-19/South_Africa/KRISP-CH01110731/2020|EPI_ISL_736926|2020-11-26|Africa', 'hCoV-19/South_Africa/KRISP-K004606/2020|EPI_ISL_660632|2020-11-08|Africa', 'hCoV-19/South_Africa/KRISP-K004635/2020|EPI_ISL_660651|2020-11-02|Africa', 'hCoV-19/South_Africa/KRISP-K004339/2020|EPI_ISL_660215|2020-10-28|Africa', 'hCoV-19/South_Africa/KRISP-K004609/2020|EPI_ISL_660634|2020-11-08|Africa'], 'annotations': []}, {'cluster': 'c199', 'lineage': 'B.1.1.84', 'mutation': (614, 'D', 'G'), '# cluster': 11, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-0365/2020|EPI_ISL_487316|2020-06-25|Africa', 'hCoV-19/South_Africa/KRISP-0378/2020|EPI_ISL_487327|2020-06-22|Africa', 'hCoV-19/South_Africa/KRISP-K002712/2020|EPI_ISL_535571|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K003671/2020|EPI_ISL_602627|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-0291/2020|EPI_ISL_487281|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-K002186/2020|EPI_ISL_515585|2020-06-30|Africa', 'hCoV-19/South_Africa/KRISP-K003673/2020|EPI_ISL_602629|2020-07-06|Africa', 'hCoV-19/South_Africa/KRISP-0369/2020|EPI_ISL_487320|2020-06-25|Africa', 'hCoV-19/South_Africa/KRISP-0290/2020|EPI_ISL_487280|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-0287/2020|EPI_ISL_487278|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-0380/2020|EPI_ISL_487328|2020-06-25|Africa'], 'annotations': []}, {'cluster': 'c199', 'lineage': 'B.1.1.84', 'mutation': (653, 'A', 'V'), '# cluster': 11, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 634, 'epi_stop': 689, 'epi_seq': 'RVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVAS', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0365/2020|EPI_ISL_487316|2020-06-25|Africa', 'hCoV-19/South_Africa/KRISP-0378/2020|EPI_ISL_487327|2020-06-22|Africa', 'hCoV-19/South_Africa/KRISP-K002712/2020|EPI_ISL_535571|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K003671/2020|EPI_ISL_602627|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-0291/2020|EPI_ISL_487281|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-K002186/2020|EPI_ISL_515585|2020-06-30|Africa', 'hCoV-19/South_Africa/KRISP-K003673/2020|EPI_ISL_602629|2020-07-06|Africa', 'hCoV-19/South_Africa/KRISP-0369/2020|EPI_ISL_487320|2020-06-25|Africa', 'hCoV-19/South_Africa/KRISP-0290/2020|EPI_ISL_487280|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-0287/2020|EPI_ISL_487278|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-0380/2020|EPI_ISL_487328|2020-06-25|Africa'], 'annotations': []}, {'cluster': 'c203', 'lineage': 'B.1.1.34', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002739/2020|EPI_ISL_529737|2020-08-13|Africa', 'hCoV-19/South_Africa/KRISP-K003696/2020|EPI_ISL_602876|2020-10-05|Africa', 'hCoV-19/South_Africa/KRISP-K001326/2020|EPI_ISL_515811|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K002735/2020|EPI_ISL_529733|2020-08-16|Africa', 'hCoV-19/South_Africa/KRISP-K002732/2020|EPI_ISL_529730|2020-08-15|Africa'], 'annotations': []}, {'cluster': 'c203', 'lineage': 'B.1.1.34', 'mutation': (810, 'S', 'L'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 779, 'epi_stop': 837, 'epi_seq': 'QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQY', '#linear': 35, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 14, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002739/2020|EPI_ISL_529737|2020-08-13|Africa', 'hCoV-19/South_Africa/KRISP-K003696/2020|EPI_ISL_602876|2020-10-05|Africa', 'hCoV-19/South_Africa/KRISP-K001326/2020|EPI_ISL_515811|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K002735/2020|EPI_ISL_529733|2020-08-16|Africa', 'hCoV-19/South_Africa/KRISP-K002732/2020|EPI_ISL_529730|2020-08-15|Africa'], 'annotations': []}, {'cluster': 'c204', 'lineage': 'B.1.1.34', 'mutation': (614, 'D', 'G'), '# cluster': 6, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002243/2020|EPI_ISL_515634|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K000641/2020|EPI_ISL_509290|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002350/2020|EPI_ISL_515722|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K002351/2020|EPI_ISL_515723|2020-07-21|Africa', 'hCoV-19/South_Africa/L00170/2020|EPI_ISL_622943|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K003724/2020|EPI_ISL_602902|2020-10-06|Africa'], 'annotations': []}, {'cluster': 'c204', 'lineage': 'B.1.1.34', 'mutation': (1162, 'P', 'S'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.16666666666666666, 'FC': 166666.66666666666, 'epi_start': 1135, 'epi_stop': 1184, 'epi_seq': 'NTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID', '#linear': 13, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037435'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002243/2020|EPI_ISL_515634|2020-07-21|Africa'], 'annotations': []}, {'cluster': 'c204', 'lineage': 'B.1.1.34', 'mutation': (1244, 'L', 'F'), '# cluster': 6, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 1202, 'epi_stop': 1258, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDE', '#linear': 12, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002243/2020|EPI_ISL_515634|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K000641/2020|EPI_ISL_509290|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002350/2020|EPI_ISL_515722|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K002351/2020|EPI_ISL_515723|2020-07-21|Africa', 'hCoV-19/South_Africa/L00170/2020|EPI_ISL_622943|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K003724/2020|EPI_ISL_602902|2020-10-06|Africa'], 'annotations': ['cytoplasm domain']}, {'cluster': 'c204', 'lineage': 'B.1.1.34', 'mutation': (121, 'N', 'T'), '# cluster': 3, '% lineage': 0.0, '% cluster': 0.5, 'FC': 500000.0, 'epi_start': 92, 'epi_stop': 138, 'epi_seq': 'FASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCND', '#linear': 10, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 5, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K000641/2020|EPI_ISL_509290|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002350/2020|EPI_ISL_515722|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K002351/2020|EPI_ISL_515723|2020-07-21|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c208', 'lineage': 'B.1.1.62', 'mutation': (614, 'D', 'G'), '# cluster': 19, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K001388/2020|EPI_ISL_515872|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K002466/2020|EPI_ISL_518049|2020-06-23|Africa', 'hCoV-19/South_Africa/KRISP-K001317/2020|EPI_ISL_515802|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-K002370/2020|EPI_ISL_515738|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002632/2020|EPI_ISL_535502|2020-07-31|Africa', 'hCoV-19/South_Africa/KRISP-K002399/2020|EPI_ISL_515763|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K000567/2020|EPI_ISL_509224|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-0417/2020|EPI_ISL_495541|2020-07-02|Africa', 'hCoV-19/South_Africa/KRISP-K002437/2020|EPI_ISL_515794|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K001055/2020|EPI_ISL_509313|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002595/2020|EPI_ISL_535460|2020-07-29|Africa', 'hCoV-19/South_Africa/KRISP-K002265/2020|EPI_ISL_515648|2020-07-20|Africa', 'hCoV-19/South_Africa/KRISP-K002594/2020|EPI_ISL_535459|2020-07-28|Africa', 'hCoV-19/South_Africa/KRISP-K001332/2020|EPI_ISL_515817|2020-07-19|Africa', 'hCoV-19/South_Africa/R13472-20/2020|EPI_ISL_622914|2020-07-06|Africa', 'hCoV-19/South_Africa/KRISP-K002190/2020|EPI_ISL_515589|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-K001099/2020|EPI_ISL_509348|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-0386/2020|EPI_ISL_487329|2020-07-01|Africa', 'hCoV-19/South_Africa/KRISP-K001336/2020|EPI_ISL_515821|2020-07-19|Africa'], 'annotations': []}, {'cluster': 'c208', 'lineage': 'B.1.1.62', 'mutation': (845, 'A', 'S'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.05263157894736842, 'FC': 52631.57894736842, 'epi_start': 826, 'epi_stop': 874, 'epi_seq': 'VTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT', '#linear': 19, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002594/2020|EPI_ISL_535459|2020-07-28|Africa'], 'annotations': []}, {'cluster': 'c210', 'lineage': 'B.1.1.314', 'mutation': (614, 'D', 'G'), '# cluster': 2, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/Chile/RM-133091/2020|EPI_ISL_746629|2020-07-24|SouthAmerica', 'hCoV-19/Chile/RM-110750/2020|EPI_ISL_746565|2020-06-25|SouthAmerica'], 'annotations': []}, {'cluster': 'c210', 'lineage': 'B.1.1.33', 'mutation': (583, 'E', 'D'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.3333333333333333, 'FC': 333333.3333333333, 'epi_start': 564, 'epi_stop': 595, 'epi_seq': 'QFGRDIADTTDAVRDPQTLEILDITPCSFGGV', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037971', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/Brazil/RS-6189/2020|EPI_ISL_729825|2020-05-10|SouthAmerica'], 'annotations': []}, {'cluster': 'c210', 'lineage': 'B.1.1.33', 'mutation': (614, 'D', 'G'), '# cluster': 3, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/Brazil/RS-6189/2020|EPI_ISL_729825|2020-05-10|SouthAmerica', 'hCoV-19/Brazil/AP-IEC165669/2020|EPI_ISL_524793|2020-04-29|SouthAmerica', 'hCoV-19/Brazil/RJ-00439/2020|EPI_ISL_717834|2020-06-02|SouthAmerica'], 'annotations': []}, {'cluster': 'c211', 'lineage': 'B.1.1.216', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-3462/2020|EPI_ISL_640132|2020-09-28|Africa'], 'annotations': []}, {'cluster': 'c211', 'lineage': 'B.1.1.216', 'mutation': (846, 'A', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 828, 'epi_stop': 874, 'epi_seq': 'LADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT', '#linear': 15, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-3462/2020|EPI_ISL_640132|2020-09-28|Africa'], 'annotations': []}, {'cluster': 'c211', 'lineage': 'B.1.1.4', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002427/2020|EPI_ISL_515788|2020-07-30|Africa'], 'annotations': []}, {'cluster': 'c211', 'lineage': 'B.1.1.75', 'mutation': (614, 'D', 'G'), '# cluster': 19, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-0278/2020|EPI_ISL_482865|2020-06-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5818/2020|EPI_ISL_700473|2020-05-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5720/2020|EPI_ISL_700568|2020-05-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5256/2020|EPI_ISL_700471|2020-04-30|Africa', 'hCoV-19/South_Africa/R13531-20/2020|EPI_ISL_622901|2020-07-09|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2683/2020|EPI_ISL_700415|2020-05-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5244/2020|EPI_ISL_700544|2020-04-29|Africa', 'hCoV-19/South_Africa/R06812/2020|EPI_ISL_490256|2020-04-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5912/2020|EPI_ISL_700477|2020-05-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5016/2020|EPI_ISL_640096|2020-04-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5031/2020|EPI_ISL_640098|2020-04-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3086/2020|EPI_ISL_700418|2020-05-03|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5002/2020|EPI_ISL_700413|2020-04-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0086/2020|EPI_ISL_640059|2020-04-04|Africa', 'hCoV-19/South_Africa/KRISP-0150/2020|EPI_ISL_467500|2020-05-30|Africa', 'hCoV-19/Zimbabwe/ZW-9102/2020|EPI_ISL_644760|2020-06-01|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5227/2020|EPI_ISL_640104|2020-04-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5020/2020|EPI_ISL_700527|2020-04-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5888/2020|EPI_ISL_700573|2020-05-24|Africa'], 'annotations': []}, {'cluster': 'c211', 'lineage': 'B.1.1.75', 'mutation': (846, 'A', 'V'), '# cluster': 18, '% lineage': 1.0, '% cluster': 0.9473684210526315, 'FC': 0.947367473685158, 'epi_start': 828, 'epi_stop': 874, 'epi_seq': 'LADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT', '#linear': 15, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0278/2020|EPI_ISL_482865|2020-06-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5818/2020|EPI_ISL_700473|2020-05-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5720/2020|EPI_ISL_700568|2020-05-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5256/2020|EPI_ISL_700471|2020-04-30|Africa', 'hCoV-19/South_Africa/R13531-20/2020|EPI_ISL_622901|2020-07-09|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2683/2020|EPI_ISL_700415|2020-05-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5244/2020|EPI_ISL_700544|2020-04-29|Africa', 'hCoV-19/South_Africa/R06812/2020|EPI_ISL_490256|2020-04-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5912/2020|EPI_ISL_700477|2020-05-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5016/2020|EPI_ISL_640096|2020-04-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5031/2020|EPI_ISL_640098|2020-04-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3086/2020|EPI_ISL_700418|2020-05-03|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5002/2020|EPI_ISL_700413|2020-04-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0086/2020|EPI_ISL_640059|2020-04-04|Africa', 'hCoV-19/South_Africa/KRISP-0150/2020|EPI_ISL_467500|2020-05-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5227/2020|EPI_ISL_640104|2020-04-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5020/2020|EPI_ISL_700527|2020-04-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5888/2020|EPI_ISL_700573|2020-05-24|Africa'], 'annotations': []}, {'cluster': 'c211', 'lineage': 'B.1.1.75', 'mutation': (846, 'A', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.05263157894736842, 'FC': 52631.57894736842, 'epi_start': 828, 'epi_stop': 874, 'epi_seq': 'LADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT', '#linear': 15, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/Zimbabwe/ZW-9102/2020|EPI_ISL_644760|2020-06-01|Africa'], 'annotations': []}, {'cluster': 'c217', 'lineage': 'B.1.1.109', 'mutation': (477, 'S', 'N'), '# cluster': 8, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 458, 'epi_stop': 513, 'epi_seq': 'KSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 35, '#non-linear': 28, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038157'], '#pubs linear': 10, '#pubs non-linear': 17, 'sequences': ['hCoV-19/South_Africa/KRISP-K004532-CS1/2020|EPI_ISL_660230|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-BH02956621/2020|EPI_ISL_736984|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K004531-CS1/2020|EPI_ISL_660229|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004347-CS1/2020|EPI_ISL_660221|2020-11-09|Africa', 'hCoV-19/South_Africa/KRISP-K004530-CS1/2020|EPI_ISL_660228|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004725-CS1/2020|EPI_ISL_660258|2020-11-18|Africa', 'hCoV-19/South_Africa/KRISP-K004533-CS1/2020|EPI_ISL_660231|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004724-CS1/2020|EPI_ISL_660257|2020-11-18|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c217', 'lineage': 'B.1.1.109', 'mutation': (614, 'D', 'G'), '# cluster': 8, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004532-CS1/2020|EPI_ISL_660230|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-BH02956621/2020|EPI_ISL_736984|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K004531-CS1/2020|EPI_ISL_660229|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004347-CS1/2020|EPI_ISL_660221|2020-11-09|Africa', 'hCoV-19/South_Africa/KRISP-K004530-CS1/2020|EPI_ISL_660228|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004725-CS1/2020|EPI_ISL_660258|2020-11-18|Africa', 'hCoV-19/South_Africa/KRISP-K004533-CS1/2020|EPI_ISL_660231|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004724-CS1/2020|EPI_ISL_660257|2020-11-18|Africa'], 'annotations': []}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (69, 'H', '-'), '# cluster': 7, '% lineage': 0.9945132327103192, '% cluster': 1.0, 'FC': 1.0055160269297811, 'epi_start': 54, 'epi_stop': 85, 'epi_seq': 'LFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLP', '#linear': 12, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065'], '#pubs linear': 6, '#pubs non-linear': 1, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (70, 'V', '-'), '# cluster': 7, '% lineage': 0.9943942559107951, '% cluster': 1.0, 'FC': 1.0056363343005608, 'epi_start': 54, 'epi_stop': 85, 'epi_seq': 'LFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLP', '#linear': 12, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': [], '#pubs linear': 6, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (144, 'Y', '-'), '# cluster': 6, '% lineage': 0.9853188163191898, '% cluster': 0.8571428571428571, 'FC': 0.8699133448313695, 'epi_start': 122, 'epi_stop': 171, 'epi_seq': 'NATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYV', '#linear': 35, '#non-linear': 21, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1037008', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038080', 'http://www.iedb.org/reference/1038547', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038474'], '#pubs linear': 12, '#pubs non-linear': 9, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (501, 'N', 'Y'), '# cluster': 7, '% lineage': 0.988857684379453, '% cluster': 1.0, 'FC': 1.011266843075296, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (570, 'A', 'D'), '# cluster': 7, '% lineage': 0.9982402501279692, '% cluster': 1.0, 'FC': 1.001761848522895, 'epi_start': 547, 'epi_stop': 586, 'epi_seq': 'TGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILD', '#linear': 27, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': []}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.9987742622746704, '% cluster': 1.0, 'FC': 1.0012262395471634, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': []}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (681, 'P', 'H'), '# cluster': 7, '% lineage': 0.9977422077113568, '% cluster': 1.0, 'FC': 1.0022618969201704, 'epi_start': 647, 'epi_stop': 698, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMS', '#linear': 42, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 12, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': []}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (716, 'T', 'I'), '# cluster': 7, '% lineage': 0.9871975429907447, '% cluster': 1.0, 'FC': 1.0129674593830669, 'epi_start': 684, 'epi_stop': 735, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTS', '#linear': 16, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038085'], '#pubs linear': 8, '#pubs non-linear': 1, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': []}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (982, 'S', 'A'), '# cluster': 7, '% lineage': 0.9873386550087849, '% cluster': 1.0, 'FC': 1.0128226846019899, 'epi_start': 960, 'epi_stop': 1022, 'epi_seq': 'NTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA', '#linear': 18, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1037942', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037363', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037968', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 17, '#pubs non-linear': 2, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': ['heptapeptide repeat sequence 1']}, {'cluster': 'c221', 'lineage': 'B.1.1.7', 'mutation': (1118, 'D', 'H'), '# cluster': 7, '% lineage': 0.9982208818117676, '% cluster': 1.0, 'FC': 1.0017812855244217, 'epi_start': 1105, 'epi_stop': 1131, 'epi_seq': 'TQRNFYEPQIITTDNTFVSGNCDVVIG', '#linear': 17, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/CAMC-B7A604/2020|EPI_ISL_741129|2020-11-12|Europe', 'hCoV-19/England/MILK-B3B739/2020|EPI_ISL_679764|2020-11-01|Europe', 'hCoV-19/South_Africa/Tygerberg_531/2021|EPI_ISL_912401|2021-01-09|Africa', 'hCoV-19/England/CAMC-F99B84/2021|EPI_ISL_851121|2021-01-10|Europe', 'hCoV-19/Belgium/rega-1793/2021|EPI_ISL_894185|2021-01-05|Europe', 'hCoV-19/England/CAMC-A660B3/2020|EPI_ISL_637676|2020-10-11|Europe', 'hCoV-19/England/CAMC-B32635/2020|EPI_ISL_659294|2020-11-05|Europe'], 'annotations': []}, {'cluster': 'c224', 'lineage': 'H.1', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002483/2020|EPI_ISL_535391|2020-08-07|Africa', 'hCoV-19/South_Africa/KRISP-K002460/2020|EPI_ISL_518044|2020-07-06|Africa', 'hCoV-19/South_Africa/KRISP-K002454/2020|EPI_ISL_518040|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002445/2020|EPI_ISL_518035|2020-07-07|Africa', 'hCoV-19/South_Africa/KRISP-K002486/2020|EPI_ISL_535393|2020-08-07|Africa'], 'annotations': []}, {'cluster': 'c225', 'lineage': 'B.1.1.67', 'mutation': (29, 'T', 'I'), '# cluster': 7, '% lineage': 0.9628647214854111, '% cluster': 1.0, 'FC': 1.03856641449163, 'epi_start': 14, 'epi_stop': 43, 'epi_seq': 'QCVNLTTRTQLPPAYTNSFTRGVYYPDKVF', '#linear': 15, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/England/ALDP-9D90DA/2020|EPI_ISL_576697|2020-09-18|Europe', 'hCoV-19/England/ALDP-9558A1/2020|EPI_ISL_554425|2020-06-12|Europe', 'hCoV-19/England/ALDP-A2E5C7/2020|EPI_ISL_586881|2020-10-05|Europe', 'hCoV-19/England/QEUH-95FC41/2020|EPI_ISL_532449|2020-08-05|Europe', 'hCoV-19/England/ALDP-A506D8/2020|EPI_ISL_597698|2020-10-07|Europe', 'hCoV-19/England/ALDP-9BDCD8/2020|EPI_ISL_568009|2020-09-09|Europe', 'hCoV-19/England/ALDP-B4802F/2020|EPI_ISL_649301|2020-11-07|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c225', 'lineage': 'B.1.1.67', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/England/ALDP-9D90DA/2020|EPI_ISL_576697|2020-09-18|Europe', 'hCoV-19/England/ALDP-9558A1/2020|EPI_ISL_554425|2020-06-12|Europe', 'hCoV-19/England/ALDP-A2E5C7/2020|EPI_ISL_586881|2020-10-05|Europe', 'hCoV-19/England/QEUH-95FC41/2020|EPI_ISL_532449|2020-08-05|Europe', 'hCoV-19/England/ALDP-A506D8/2020|EPI_ISL_597698|2020-10-07|Europe', 'hCoV-19/England/ALDP-9BDCD8/2020|EPI_ISL_568009|2020-09-09|Europe', 'hCoV-19/England/ALDP-B4802F/2020|EPI_ISL_649301|2020-11-07|Europe'], 'annotations': []}, {'cluster': 'c225', 'lineage': 'B.1.1.67', 'mutation': (1247, 'C', 'Y'), '# cluster': 1, '% lineage': 0.03183023872679045, '% cluster': 0.14285714285714285, 'FC': 4.487954241532816, 'epi_start': 1233, 'epi_stop': 1270, 'epi_seq': 'MLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKL', '#linear': 11, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037435'], 'pubs non-linear': [], '#pubs linear': 5, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/QEUH-95FC41/2020|EPI_ISL_532449|2020-08-05|Europe'], 'annotations': ['cytoplasm domain']}, {'cluster': 'c227', 'lineage': 'B.1.1.53', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/R10007/2020|EPI_ISL_490258|2020-05-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5422/2020|EPI_ISL_700472|2020-05-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2911/2020|EPI_ISL_700578|2020-05-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5411/2020|EPI_ISL_700523|2020-05-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5482/2020|EPI_ISL_700503|2020-05-06|Africa'], 'annotations': []}, {'cluster': 'c228', 'lineage': 'B.1.1.53', 'mutation': (614, 'D', 'G'), '# cluster': 13, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/LR00111/2020|EPI_ISL_514405|2020-07-20|Africa', 'hCoV-19/South_Africa/R13509-20/2020|EPI_ISL_622916|2020-07-10|Africa', 'hCoV-19/South_Africa/R13512-20/2020|EPI_ISL_622906|2020-07-10|Africa', 'hCoV-19/South_Africa/R13562-20/2020|EPI_ISL_622912|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002548/2020|EPI_ISL_535418|2020-07-30|Africa', 'hCoV-19/South_Africa/R13502-20/2020|EPI_ISL_622921|2020-07-09|Africa', 'hCoV-19/South_Africa/R13564-20/2020|EPI_ISL_622907|2020-07-13|Africa', 'hCoV-19/South_Africa/R13563-20/2020|EPI_ISL_622908|2020-07-13|Africa', 'hCoV-19/South_Africa/R13566-20/2020|EPI_ISL_622911|2020-07-14|Africa', 'hCoV-19/South_Africa/R10741/2020|EPI_ISL_490301|2020-06-15|Africa', 'hCoV-19/South_Africa/LR00118/2020|EPI_ISL_514411|2020-07-20|Africa', 'hCoV-19/South_Africa/LR00067/2020|EPI_ISL_514379|2020-07-13|Africa', 'hCoV-19/South_Africa/LR00107/2020|EPI_ISL_514404|2020-07-14|Africa'], 'annotations': []}, {'cluster': 'c228', 'lineage': 'B.1.1.53', 'mutation': (676, 'T', 'P'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.07692307692307693, 'FC': 76923.07692307694, 'epi_start': 647, 'epi_stop': 695, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAY', '#linear': 22, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/LR00111/2020|EPI_ISL_514405|2020-07-20|Africa'], 'annotations': []}, {'cluster': 'c228', 'lineage': 'B.1.1.53', 'mutation': (1232, 'I', 'L'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.07692307692307693, 'FC': 76923.07692307694, 'epi_start': 1202, 'epi_stop': 1245, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLK', '#linear': 8, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 4, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/R13502-20/2020|EPI_ISL_622921|2020-07-09|Africa'], 'annotations': ['TM domain']}, {'cluster': 'c228', 'lineage': 'B.1.1.53', 'mutation': (255, 'S', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.07692307692307693, 'FC': 76923.07692307694, 'epi_start': 240, 'epi_stop': 282, 'epi_seq': 'TLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/R13564-20/2020|EPI_ISL_622907|2020-07-13|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c240', 'lineage': 'C.1', 'mutation': (614, 'D', 'G'), '# cluster': 25, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-3520/2020|EPI_ISL_640090|2020-10-10|Africa', 'hCoV-19/South_Africa/Tygerberg_346_CC2/2020|EPI_ISL_660150|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_339_CC2/2020|EPI_ISL_660146|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_312_CC2/2020|EPI_ISL_660121|2020-10-07|Africa', 'hCoV-19/South_Africa/Tygerberg_331_CC2/2020|EPI_ISL_660139|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_366_CC2/2020|EPI_ISL_660158|2020-10-10|Africa', 'hCoV-19/South_Africa/Tygerberg_321_CC2/2020|EPI_ISL_660130|2020-10-12|Africa', 'hCoV-19/South_Africa/Tygerberg_330_CC2/2020|EPI_ISL_660138|2020-10-08|Africa', 'hCoV-19/South_Africa/Tygerberg_329_CC2/2020|EPI_ISL_660137|2020-10-02|Africa', 'hCoV-19/South_Africa/Tygerberg_317_CC2/2020|EPI_ISL_660126|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_335_CC2/2020|EPI_ISL_660142|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_328_CC2/2020|EPI_ISL_660136|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_316_CC2/2020|EPI_ISL_660125|2020-10-07|Africa', 'hCoV-19/South_Africa/Tygerberg_314_CC2/2020|EPI_ISL_660123|2020-10-08|Africa', 'hCoV-19/South_Africa/Tygerberg_327_CC2/2020|EPI_ISL_660135|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_322_CC2/2020|EPI_ISL_660131|2020-10-12|Africa', 'hCoV-19/South_Africa/Tygerberg_326_CC2/2020|EPI_ISL_660134|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_319_CC2/2020|EPI_ISL_660128|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_338_CC2/2020|EPI_ISL_660145|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_336_CC2/2020|EPI_ISL_660143|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_315_CC2/2020|EPI_ISL_660124|2020-10-07|Africa', 'hCoV-19/South_Africa/Tygerberg_313_CC2/2020|EPI_ISL_660122|2020-10-08|Africa', 'hCoV-19/South_Africa/Tygerberg_325_CC2/2020|EPI_ISL_660133|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_334_CC2/2020|EPI_ISL_660141|2020-10-10|Africa', 'hCoV-19/South_Africa/Tygerberg_344_CC2/2020|EPI_ISL_660148|2020-10-09|Africa'], 'annotations': []}, {'cluster': 'c242', 'lineage': 'C.1', 'mutation': (614, 'D', 'G'), '# cluster': 6, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K001381/2020|EPI_ISL_515866|2020-07-19|Africa', 'hCoV-19/South_Africa/KRISP-K002431/2020|EPI_ISL_515792|2020-07-29|Africa', 'hCoV-19/South_Africa/KRISP-K002300/2020|EPI_ISL_515677|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K002291/2020|EPI_ISL_515669|2020-07-22|Africa', 'hCoV-19/South_Africa/LR00136/2020|EPI_ISL_514367|2020-07-20|Africa', 'hCoV-19/South_Africa/LR00155/2020|EPI_ISL_514423|2020-07-21|Africa'], 'annotations': []}, {'cluster': 'c255', 'lineage': 'C.9', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K001407/2020|EPI_ISL_515890|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K003739/2020|EPI_ISL_602916|2020-09-29|Africa', 'hCoV-19/South_Africa/KRISP-K002897/2020|EPI_ISL_602709|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K001391/2020|EPI_ISL_515875|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K001397/2020|EPI_ISL_515880|2020-07-18|Africa'], 'annotations': []}, {'cluster': 'c257', 'lineage': 'C.9', 'mutation': (614, 'D', 'G'), '# cluster': 6, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002352/2020|EPI_ISL_515724|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K002629/2020|EPI_ISL_535499|2020-07-31|Africa', 'hCoV-19/South_Africa/KRISP-K002311/2020|EPI_ISL_515687|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K003690/2020|EPI_ISL_602872|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K003740/2020|EPI_ISL_602917|2020-09-29|Africa', 'hCoV-19/South_Africa/KRISP-K003753/2020|EPI_ISL_602926|2020-09-30|Africa'], 'annotations': []}, {'cluster': 'c257', 'lineage': 'C.9', 'mutation': (1084, 'D', 'Y'), '# cluster': 6, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 1054, 'epi_stop': 1098, 'epi_seq': 'QSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSN', '#linear': 25, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946'], 'pubs non-linear': [], '#pubs linear': 6, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002352/2020|EPI_ISL_515724|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K002629/2020|EPI_ISL_535499|2020-07-31|Africa', 'hCoV-19/South_Africa/KRISP-K002311/2020|EPI_ISL_515687|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K003690/2020|EPI_ISL_602872|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K003740/2020|EPI_ISL_602917|2020-09-29|Africa', 'hCoV-19/South_Africa/KRISP-K003753/2020|EPI_ISL_602926|2020-09-30|Africa'], 'annotations': []}, {'cluster': 'c259', 'lineage': 'B.1.1.1', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 0.9995777027027027, '% cluster': 1.0, 'FC': 1.000421474863518, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/L00193/2020|EPI_ISL_622956|2020-00-00|Africa'], 'annotations': []}, {'cluster': 'c259', 'lineage': 'C.2', 'mutation': (614, 'D', 'G'), '# cluster': 12, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/LR00078/2020|EPI_ISL_514389|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-0390/2020|EPI_ISL_487333|2020-07-01|Africa', 'hCoV-19/South_Africa/KRISP-K002693/2020|EPI_ISL_535555|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K005318/2020|EPI_ISL_678610|2020-11-15|Africa', 'hCoV-19/South_Africa/KRISP-0395/2020|EPI_ISL_487338|2020-07-01|Africa', 'hCoV-19/South_Africa/KRISP-K001045/2020|EPI_ISL_509307|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K003687/2020|EPI_ISL_602869|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-0543/2020|EPI_ISL_498084|2020-07-12|Africa', 'hCoV-19/South_Africa/KRISP-0565/2020|EPI_ISL_498104|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-K002282/2020|EPI_ISL_515662|2020-07-21|Africa', 'hCoV-19/South_Africa/R10517/2020|EPI_ISL_490282|2020-06-09|Africa', 'hCoV-19/South_Africa/LR00037/2020|EPI_ISL_515164|2020-07-05|Africa'], 'annotations': []}, {'cluster': 'c259', 'lineage': 'C.2', 'mutation': (384, 'P', 'S'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.08333333333333333, 'FC': 83333.33333333333, 'epi_start': 351, 'epi_stop': 403, 'epi_seq': 'YAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIR', '#linear': 30, '#non-linear': 19, 'pubs linear': ['http://www.iedb.org/reference/1037576', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1036858', 'http://www.iedb.org/reference/1037157', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038067', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1037006', 'http://www.iedb.org/reference/1038093', 'http://www.iedb.org/reference/1038244', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1037523', 'http://www.iedb.org/reference/1037109', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1036587', 'http://www.iedb.org/reference/1038415'], '#pubs linear': 12, '#pubs non-linear': 18, 'sequences': ['hCoV-19/South_Africa/KRISP-0390/2020|EPI_ISL_487333|2020-07-01|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c259', 'lineage': 'C.2', 'mutation': (222, 'A', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.08333333333333333, 'FC': 83333.33333333333, 'epi_start': 204, 'epi_stop': 235, 'epi_seq': 'YSKHTPINLVRDLPQGFSALEPLVDLPIGINI', '#linear': 23, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0543/2020|EPI_ISL_498084|2020-07-12|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c260', 'lineage': 'B.1.1.1', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.9995777027027027, '% cluster': 1.0, 'FC': 1.000421474863518, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/Italy/VEN-IZSVe-20RS2155-12_VI/2020|EPI_ISL_794827|2020-11-06|Europe', 'hCoV-19/France/ARA-113487/2020|EPI_ISL_745345|2020-11-28|Europe', 'hCoV-19/Italy/CAM-TIGEM-168/2020|EPI_ISL_736886|2020-10-26|Europe', 'hCoV-19/Italy/CAM-TIGEM-197/2020|EPI_ISL_776910|2020-10-26|Europe', 'hCoV-19/Italy/CAM-TIGEM-330/2020|EPI_ISL_776975|2020-09-03|Europe'], 'annotations': []}, {'cluster': 'c260', 'lineage': 'B.1.1.1', 'mutation': (572, 'T', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.2, 'FC': 200000.00000000003, 'epi_start': 554, 'epi_stop': 586, 'epi_seq': 'ESNKKFLPFQQFGRDIADTTDAVRDPQTLEILD', '#linear': 15, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 6, '#pubs non-linear': 0, 'sequences': ['hCoV-19/France/ARA-113487/2020|EPI_ISL_745345|2020-11-28|Europe'], 'annotations': []}, {'cluster': 'c260', 'lineage': 'B.1.1.1', 'mutation': (308, 'V', 'L'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.2, 'FC': 200000.00000000003, 'epi_start': 294, 'epi_stop': 323, 'epi_seq': 'DPLSETKCTLKSFTVEKGIYQTSNFRVQPT', '#linear': 25, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/Italy/CAM-TIGEM-168/2020|EPI_ISL_736886|2020-10-26|Europe'], 'annotations': []}, {'cluster': 'c263', 'lineage': 'B.1.1.1', 'mutation': (614, 'D', 'G'), '# cluster': 15, '% lineage': 0.9995777027027027, '% cluster': 1.0, 'FC': 1.000421474863518, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/Switzerland/BL-ETHZ-190034/2020|EPI_ISL_500897|2020-07-08|Europe', 'hCoV-19/Switzerland/BE-ETHZ-210076/2020|EPI_ISL_511992|2020-07-22|Europe', 'hCoV-19/Switzerland/BS-ETHZ-190088/2020|EPI_ISL_500944|2020-07-07|Europe', 'hCoV-19/Serbia/C16875/2020|EPI_ISL_891269|2020-07-30|Europe', 'hCoV-19/Italy/FVG-ICGEB-S218/2020|EPI_ISL_498563|2020-07-06|Europe', 'hCoV-19/Italy/ABR-IZSGC-TE101729/2020|EPI_ISL_849662|2020-07-24|Europe', 'hCoV-19/Germany/HE-Cento-36971058/2020|EPI_ISL_815261|2020-07-13|Europe', 'hCoV-19/Germany/HE-Cento-30781659/2020|EPI_ISL_815281|2020-07-11|Europe', 'hCoV-19/Wales/QEUH-99630D/2020|EPI_ISL_560305|2020-08-28|Europe', 'hCoV-19/Germany/BE-ChVir-D1928-7459/2020|EPI_ISL_753872|2020-10-09|Europe', 'hCoV-19/Scotland/QEUH-99BE07/2020|EPI_ISL_559999|2020-08-30|Europe', 'hCoV-19/England/MILK-970846/2020|EPI_ISL_553048|2020-08-17|Europe', 'hCoV-19/England/CAMC-9B1E92/2020|EPI_ISL_549398|2020-09-04|Europe', 'hCoV-19/England/QEUH-996349/2020|EPI_ISL_549525|2020-08-27|Europe', 'hCoV-19/England/QEUH-996895/2020|EPI_ISL_549537|2020-08-29|Europe'], 'annotations': []}, {'cluster': 'c269', 'lineage': 'B.1.1.1', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.9995777027027027, '% cluster': 1.0, 'FC': 1.000421474863518, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Korea/KCDC2674/2020|EPI_ISL_522456|2020-06-18|Asia', 'hCoV-19/South_Korea/KDCA0492/2020|EPI_ISL_850203|2020-06-11|Asia', 'hCoV-19/Spain/PV-IBV-005154/2020|EPI_ISL_509642|2020-06-22|Europe', 'hCoV-19/Spain/PV-IBV-005161/2020|EPI_ISL_509647|2020-06-23|Europe', 'hCoV-19/England/ALDP-4ABC69/2020|EPI_ISL_559460|2020-06-12|Europe'], 'annotations': []}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (18, 'L', 'F'), '# cluster': 4, '% lineage': 0.37103594080338265, '% cluster': 0.8, 'FC': 2.156119545045329, 'epi_start': 1, 'epi_stop': 34, 'epi_seq': 'MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTR', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 4, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 5, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 5, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 5, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 5, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 5, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 5, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 5, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 5, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': []}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 5, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007793/2021|EPI_ISL_860567|2021-01-02|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-75/2020|EPI_ISL_912493|2020-12-03|Africa', 'hCoV-19/South_Africa/KRISP-K007783/2021|EPI_ISL_860558|2021-01-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920866/2020|EPI_ISL_736966|2020-12-06|Africa', 'hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': []}, {'cluster': 'c28', 'lineage': 'B.1.351', 'mutation': (108, 'T', 'N'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.2, 'FC': 200000.00000000003, 'epi_start': 92, 'epi_stop': 134, 'epi_seq': 'FASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQ', '#linear': 12, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-MDSH920888/2020|EPI_ISL_736968|2020-12-06|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c282', 'lineage': 'B.1.1.57', 'mutation': (614, 'D', 'G'), '# cluster': 16, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002541/2020|EPI_ISL_535411|2020-07-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0620/2020|EPI_ISL_700564|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005356/2020|EPI_ISL_678637|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-0274/2020|EPI_ISL_482861|2020-06-18|Africa', 'hCoV-19/South_Africa/KRISP-0273/2020|EPI_ISL_482860|2020-06-18|Africa', 'hCoV-19/South_Africa/KRISP-0276/2020|EPI_ISL_482863|2020-06-18|Africa', 'hCoV-19/South_Africa/KRISP-K003340/2020|EPI_ISL_602732|2020-09-07|Africa', 'hCoV-19/South_Africa/KRISP-K003679/2020|EPI_ISL_602865|2020-09-20|Africa', 'hCoV-19/South_Africa/KRISP-K003698/2020|EPI_ISL_602878|2020-10-04|Africa', 'hCoV-19/South_Africa/KRISP-K004081/2020|EPI_ISL_635057|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004038/2020|EPI_ISL_635019|2020-10-15|Africa', 'hCoV-19/South_Africa/KRISP-K003359/2020|EPI_ISL_602750|2020-09-03|Africa', 'hCoV-19/South_Africa/KRISP-K004054/2020|EPI_ISL_635033|2020-10-20|Africa', 'hCoV-19/South_Africa/KRISP-K003398/2020|EPI_ISL_602786|2020-09-11|Africa', 'hCoV-19/South_Africa/KRISP-K003721/2020|EPI_ISL_605788|2020-10-07|Africa', 'hCoV-19/South_Africa/KRISP-K003742/2020|EPI_ISL_602918|2020-09-29|Africa'], 'annotations': []}, {'cluster': 'c282', 'lineage': 'B.1.1.57', 'mutation': (1260, 'D', 'Y'), '# cluster': 16, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 1246, 'epi_stop': 1273, 'epi_seq': 'GCCSCGSCCKFDEDDSEPVLKGVKLHYT', '#linear': 16, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037435'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002541/2020|EPI_ISL_535411|2020-07-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0620/2020|EPI_ISL_700564|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005356/2020|EPI_ISL_678637|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-0274/2020|EPI_ISL_482861|2020-06-18|Africa', 'hCoV-19/South_Africa/KRISP-0273/2020|EPI_ISL_482860|2020-06-18|Africa', 'hCoV-19/South_Africa/KRISP-0276/2020|EPI_ISL_482863|2020-06-18|Africa', 'hCoV-19/South_Africa/KRISP-K003340/2020|EPI_ISL_602732|2020-09-07|Africa', 'hCoV-19/South_Africa/KRISP-K003679/2020|EPI_ISL_602865|2020-09-20|Africa', 'hCoV-19/South_Africa/KRISP-K003698/2020|EPI_ISL_602878|2020-10-04|Africa', 'hCoV-19/South_Africa/KRISP-K004081/2020|EPI_ISL_635057|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004038/2020|EPI_ISL_635019|2020-10-15|Africa', 'hCoV-19/South_Africa/KRISP-K003359/2020|EPI_ISL_602750|2020-09-03|Africa', 'hCoV-19/South_Africa/KRISP-K004054/2020|EPI_ISL_635033|2020-10-20|Africa', 'hCoV-19/South_Africa/KRISP-K003398/2020|EPI_ISL_602786|2020-09-11|Africa', 'hCoV-19/South_Africa/KRISP-K003721/2020|EPI_ISL_605788|2020-10-07|Africa', 'hCoV-19/South_Africa/KRISP-K003742/2020|EPI_ISL_602918|2020-09-29|Africa'], 'annotations': ['cytoplasm domain']}, {'cluster': 'c282', 'lineage': 'B.1.1.57', 'mutation': (152, 'W', 'L'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.125, 'FC': 125000.0, 'epi_start': 129, 'epi_stop': 171, 'epi_seq': 'KVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYV', '#linear': 16, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1037008', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 10, '#pubs non-linear': 5, 'sequences': ['hCoV-19/South_Africa/KRISP-K004081/2020|EPI_ISL_635057|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004038/2020|EPI_ISL_635019|2020-10-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c285', 'lineage': 'B.1.1.57', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002444/2020|EPI_ISL_518034|2020-07-07|Africa', 'hCoV-19/South_Africa/KRISP-K002175/2020|EPI_ISL_515577|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-K002177/2020|EPI_ISL_515579|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-K002449/2020|EPI_ISL_518038|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-0296/2020|EPI_ISL_487284|2020-06-26|Africa', 'hCoV-19/South_Africa/KRISP-K002555/2020|EPI_ISL_535424|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K002424/2020|EPI_ISL_515785|2020-07-30|Africa'], 'annotations': []}, {'cluster': 'c289', 'lineage': 'B.1.1.311', 'mutation': (614, 'D', 'G'), '# cluster': 8, '% lineage': 0.9997669540899558, '% cluster': 1.0, 'FC': 1.000232099767846, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/England/QEUH-9CA29A/2020|EPI_ISL_567312|2020-09-10|Europe', 'hCoV-19/England/ALDP-9B5E07/2020|EPI_ISL_572968|2020-08-29|Europe', 'hCoV-19/Wales/PHWC-485139/2020|EPI_ISL_628150|2020-10-21|Europe', 'hCoV-19/England/ALDP-B766DB/2020|EPI_ISL_723772|2020-11-12|Europe', 'hCoV-19/Wales/PHWC-47E6BC/2020|EPI_ISL_595487|2020-10-10|Europe', 'hCoV-19/England/QEUH-B7D003/2020|EPI_ISL_741839|2020-11-14|Europe', 'hCoV-19/England/CAMC-9DFFC8/2020|EPI_ISL_576949|2020-09-21|Europe', 'hCoV-19/England/MILK-B3B0C5/2020|EPI_ISL_679741|2020-11-01|Europe'], 'annotations': []}, {'cluster': 'c289', 'lineage': 'B.1.1.311', 'mutation': (477, 'S', 'I'), '# cluster': 1, '% lineage': 0.0515031461197856, '% cluster': 0.125, 'FC': 2.426989075972285, 'epi_start': 458, 'epi_stop': 513, 'epi_seq': 'KSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 35, '#non-linear': 28, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038157'], '#pubs linear': 10, '#pubs non-linear': 17, 'sequences': ['hCoV-19/Wales/PHWC-485139/2020|EPI_ISL_628150|2020-10-21|Europe'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c289', 'lineage': 'B.1.1.311', 'mutation': (957, 'Q', 'L'), '# cluster': 1, '% lineage': 0.008622698671638312, '% cluster': 0.125, 'FC': 14.494940600267144, 'epi_start': 939, 'epi_stop': 971, 'epi_seq': 'SSTASALGKLQDVVNQNAQALNTLVKQLSSNFG', '#linear': 27, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/ALDP-B766DB/2020|EPI_ISL_723772|2020-11-12|Europe'], 'annotations': ['heptapeptide repeat sequence 1']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 9, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 9, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 9, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 9, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 9, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 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'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 9, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 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'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 9, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 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'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 9, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': 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'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 9, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': []}, {'cluster': 'c29', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 9, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1653-KRISP/2020|EPI_ISL_696485|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7020-KRISP/2020|EPI_ISL_696483|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7066-KRISP/2020|EPI_ISL_696506|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7055-KRISP/2020|EPI_ISL_696516|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352301/2020|EPI_ISL_736981|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7015-KRISP/2020|EPI_ISL_696457|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7060-KRISP/2020|EPI_ISL_696514|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7049-KRISP/2020|EPI_ISL_696518|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7052-KRISP/2020|EPI_ISL_696517|2020-11-24|Africa'], 'annotations': []}, {'cluster': 'c290', 'lineage': 'B.1.1.309', 'mutation': (614, 'D', 'G'), '# cluster': 6, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/England/QEUH-9C9ADF/2020|EPI_ISL_567509|2020-09-10|Europe', 'hCoV-19/England/CAMC-A42062/2020|EPI_ISL_609318|2020-10-05|Europe', 'hCoV-19/England/QEUH-9B0F45/2020|EPI_ISL_559869|2020-09-03|Europe', 'hCoV-19/England/QEUH-9AE0DE/2020|EPI_ISL_638625|2020-09-05|Europe', 'hCoV-19/England/QEUH-B2D4D9/2020|EPI_ISL_660026|2020-11-04|Europe', 'hCoV-19/England/QEUH-B678E6/2020|EPI_ISL_655920|2020-11-07|Europe'], 'annotations': []}, {'cluster': 'c290', 'lineage': 'B.1.1.309', 'mutation': (198, 'D', 'G'), '# cluster': 1, '% lineage': 0.05737704918032787, '% cluster': 0.16666666666666666, 'FC': 2.904711279793885, 'epi_start': 184, 'epi_stop': 215, 'epi_seq': 'GNFKNLREFVFKNIDGYFKIYSKHTPINLVRD', '#linear': 41, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037971', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/QEUH-B678E6/2020|EPI_ISL_655920|2020-11-07|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c291', 'lineage': 'B.1.1.119', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-0266/2020|EPI_ISL_482853|2020-06-17|Africa', 'hCoV-19/South_Africa/KRISP-0458/2020|EPI_ISL_495549|2020-07-02|Africa', 'hCoV-19/South_Africa/LR00128/2020|EPI_ISL_514360|2020-07-20|Africa', 'hCoV-19/South_Africa/KRISP-K002680/2020|EPI_ISL_535544|2020-08-03|Africa', 'hCoV-19/South_Africa/KRISP-K002826/2020|EPI_ISL_602646|2020-09-01|Africa', 'hCoV-19/South_Africa/KRISP-K003683/2020|EPI_ISL_602866|2020-09-26|Africa', 'hCoV-19/South_Africa/KRISP-K002837/2020|EPI_ISL_602654|2020-08-31|Africa'], 'annotations': []}, {'cluster': 'c291', 'lineage': 'B.1.1.119', 'mutation': (20, 'T', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.14285714285714285, 'FC': 142857.14285714287, 'epi_start': 6, 'epi_stop': 34, 'epi_seq': 'VLLPLVSSQCVNLTTRTQLPPAYTNSFTR', '#linear': 12, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038063'], '#pubs linear': 8, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K002680/2020|EPI_ISL_535544|2020-08-03|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c291', 'lineage': 'B.1.1.119', 'mutation': (1149, 'K', 'R'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.2857142857142857, 'FC': 285714.28571428574, 'epi_start': 1135, 'epi_stop': 1165, 'epi_seq': 'NTVYDPLQPELDSFKEELDKYFKNHTSPDVD', '#linear': 17, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037435'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K003683/2020|EPI_ISL_602866|2020-09-26|Africa', 'hCoV-19/South_Africa/KRISP-K002837/2020|EPI_ISL_602654|2020-08-31|Africa'], 'annotations': []}, {'cluster': 'c291', 'lineage': 'B.1.1.52', 'mutation': (614, 'D', 'G'), '# cluster': 2, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/LR00145/2020|EPI_ISL_514374|2020-07-20|Africa', 'hCoV-19/South_Africa/LR00081/2020|EPI_ISL_514392|2020-07-13|Africa'], 'annotations': []}, {'cluster': 'c293', 'lineage': 'B.1.1.281', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/India/MH-ACTREC-627/2020|EPI_ISL_700262|2020-09-11|Asia', 'hCoV-19/India/MH-ACTREC-363/2020|EPI_ISL_700012|2020-07-23|Asia', 'hCoV-19/Bahrain/02/2020|EPI_ISL_486887|2020-06-23|Asia', 'hCoV-19/India/MH-ACTREC-313/2020|EPI_ISL_699962|2020-07-15|Asia', 'hCoV-19/India/MH-ACTREC-497/2020|EPI_ISL_700145|2020-08-14|Asia', 'hCoV-19/India/MH-ACTREC-675/2020|EPI_ISL_700300|2020-09-18|Asia', 'hCoV-19/India/MH-ACTREC-568/2020|EPI_ISL_700212|2020-08-31|Asia'], 'annotations': []}, {'cluster': 'c293', 'lineage': 'B.1.1.281', 'mutation': (1063, 'L', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.14285714285714285, 'FC': 142857.14285714287, 'epi_start': 1046, 'epi_stop': 1096, 'epi_seq': 'GYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFV', '#linear': 17, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/Bahrain/02/2020|EPI_ISL_486887|2020-06-23|Asia'], 'annotations': []}, {'cluster': 'c293', 'lineage': 'B.1.1.281', 'mutation': (946, 'G', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.14285714285714285, 'FC': 142857.14285714287, 'epi_start': 906, 'epi_stop': 968, 'epi_seq': 'FNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/India/MH-ACTREC-675/2020|EPI_ISL_700300|2020-09-18|Asia'], 'annotations': ['heptapeptide repeat sequence 1']}, {'cluster': 'c293', 'lineage': 'B.1.1.306', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/India/MH-AFCO-7992/2020|EPI_ISL_722187|2020-06-15|Asia'], 'annotations': []}, {'cluster': 'c299', 'lineage': 'B.1.1.273', 'mutation': (614, 'D', 'G'), '# cluster': 70, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002618/2020|EPI_ISL_535482|2020-07-29|Africa', 'hCoV-19/South_Africa/KRISP-K001071/2020|EPI_ISL_509325|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K004294/2020|EPI_ISL_660175|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K002642/2020|EPI_ISL_535512|2020-08-02|Africa', 'hCoV-19/South_Africa/KRISP-K003541/2020|EPI_ISL_602858|2020-09-25|Africa', 'hCoV-19/South_Africa/KRISP-K002703/2020|EPI_ISL_535563|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K001409/2020|EPI_ISL_515892|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-0492/2020|EPI_ISL_498063|2020-07-07|Africa', 'hCoV-19/South_Africa/KRISP-K003716/2020|EPI_ISL_602896|2020-10-07|Africa', 'hCoV-19/South_Africa/KRISP-K003723/2020|EPI_ISL_602901|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K004075/2020|EPI_ISL_635052|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K003346/2020|EPI_ISL_602738|2020-09-07|Africa', 'hCoV-19/South_Africa/KRISP-K003339/2020|EPI_ISL_602731|2020-09-07|Africa', 'hCoV-19/South_Africa/KRISP-K004313/2020|EPI_ISL_660191|2020-10-25|Africa', 'hCoV-19/South_Africa/KRISP-K004640/2020|EPI_ISL_660655|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-K003692/2020|EPI_ISL_602874|2020-10-05|Africa', 'hCoV-19/South_Africa/KRISP-K004340/2020|EPI_ISL_660216|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-K002395/2020|EPI_ISL_515760|2020-07-28|Africa', 'hCoV-19/South_Africa/KRISP-K000584/2020|EPI_ISL_509240|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-0556/2020|EPI_ISL_498095|2020-07-15|Africa', 'hCoV-19/South_Africa/KRISP-K002731/2020|EPI_ISL_529729|2020-08-16|Africa', 'hCoV-19/South_Africa/KRISP-K003387/2020|EPI_ISL_602775|2020-09-10|Africa', 'hCoV-19/South_Africa/KRISP-K003394/2020|EPI_ISL_602782|2020-09-11|Africa', 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'hCoV-19/South_Africa/KRISP-K002554/2020|EPI_ISL_535423|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K004306/2020|EPI_ISL_660185|2020-10-05|Africa', 'hCoV-19/South_Africa/KRISP-0503/2020|EPI_ISL_498071|2020-07-11|Africa', 'hCoV-19/South_Africa/KRISP-0502/2020|EPI_ISL_498070|2020-07-11|Africa', 'hCoV-19/South_Africa/KRISP-K003390/2020|EPI_ISL_602778|2020-09-10|Africa', 'hCoV-19/South_Africa/KRISP-K001079/2020|EPI_ISL_509333|2020-07-03|Africa', 'hCoV-19/South_Africa/KRISP-K001368/2020|EPI_ISL_515853|2020-07-15|Africa', 'hCoV-19/South_Africa/KRISP-K002365/2020|EPI_ISL_515733|2020-07-22|Africa'], 'annotations': []}, {'cluster': 'c299', 'lineage': 'B.1.1.273', 'mutation': (1235, 'C', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.014285714285714285, 'FC': 14285.714285714286, 'epi_start': 1202, 'epi_stop': 1250, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSC', '#linear': 9, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037823', 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'annotations': []}, {'cluster': 'c299', 'lineage': 'B.1.1.273', 'mutation': (1143, 'P', 'L'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.014285714285714285, 'FC': 14285.714285714286, 'epi_start': 1129, 'epi_stop': 1165, 'epi_seq': 'VIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVD', '#linear': 15, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037435'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002679/2020|EPI_ISL_535543|2020-08-02|Africa'], 'annotations': []}, {'cluster': 'c299', 'lineage': 'B.1.1.273', 'mutation': (1084, 'D', 'Y'), '# cluster': 1, '% lineage': 0.0, '% cluster': 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14285.714285714286, 'epi_start': 779, 'epi_stop': 837, 'epi_seq': 'QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQY', '#linear': 19, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K003734/2020|EPI_ISL_602912|2020-09-30|Africa'], 'annotations': ['fusion peptide']}, {'cluster': 'c299', 'lineage': 'B.1.1.273', 'mutation': (706, 'A', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.014285714285714285, 'FC': 14285.714285714286, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 17, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K003701/2020|EPI_ISL_602881|2020-10-04|Africa'], 'annotations': []}, {'cluster': 'c299', 'lineage': 'B.1.1.273', 'mutation': (655, 'H', 'Y'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.014285714285714285, 'FC': 14285.714285714286, 'epi_start': 641, 'epi_stop': 689, 'epi_seq': 'NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVAS', '#linear': 14, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 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'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-K004306/2020|EPI_ISL_660185|2020-10-05|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c299', 'lineage': 'B.1.1.273', 'mutation': (1074, 'N', 'H'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.02857142857142857, 'FC': 28571.428571428572, 'epi_start': 1054, 'epi_stop': 1096, 'epi_seq': 'QSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFV', '#linear': 16, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0503/2020|EPI_ISL_498071|2020-07-11|Africa', 'hCoV-19/South_Africa/KRISP-0502/2020|EPI_ISL_498070|2020-07-11|Africa'], 'annotations': []}, {'cluster': 'c301', 'lineage': 'B.1.1.273', 'mutation': (614, 'D', 'G'), '# cluster': 11, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004601/2020|EPI_ISL_660630|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004034/2020|EPI_ISL_635015|2020-10-14|Africa', 'hCoV-19/South_Africa/KRISP-K004336/2020|EPI_ISL_660212|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004032/2020|EPI_ISL_635013|2020-10-12|Africa', 'hCoV-19/South_Africa/KRISP-K004030/2020|EPI_ISL_635011|2020-10-12|Africa', 'hCoV-19/South_Africa/KRISP-K005306/2020|EPI_ISL_678599|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-K004031/2020|EPI_ISL_635012|2020-10-12|Africa', 'hCoV-19/South_Africa/KRISP-K002634/2020|EPI_ISL_535504|2020-08-03|Africa', 'hCoV-19/South_Africa/KRISP-K002464/2020|EPI_ISL_518047|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-0579/2020|EPI_ISL_498117|2020-07-08|Africa', 'hCoV-19/South_Africa/KRISP-0586/2020|EPI_ISL_498124|2020-07-08|Africa'], 'annotations': []}, {'cluster': 'c301', 'lineage': 'B.1.1.273', 'mutation': (689, 'S', 'I'), '# cluster': 7, '% lineage': 0.0, '% cluster': 0.6363636363636364, 'FC': 636363.6363636364, 'epi_start': 647, 'epi_stop': 726, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 40, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004601/2020|EPI_ISL_660630|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004034/2020|EPI_ISL_635015|2020-10-14|Africa', 'hCoV-19/South_Africa/KRISP-K004336/2020|EPI_ISL_660212|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004032/2020|EPI_ISL_635013|2020-10-12|Africa', 'hCoV-19/South_Africa/KRISP-K004030/2020|EPI_ISL_635011|2020-10-12|Africa', 'hCoV-19/South_Africa/KRISP-K005306/2020|EPI_ISL_678599|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-K004031/2020|EPI_ISL_635012|2020-10-12|Africa'], 'annotations': []}, {'cluster': 'c301', 'lineage': 'B.1.146', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K005326/2020|EPI_ISL_678616|2020-11-16|Africa'], 'annotations': []}, {'cluster': 'c301', 'lineage': 'B.1.146', 'mutation': (689, 'S', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 647, 'epi_stop': 726, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 40, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K005326/2020|EPI_ISL_678616|2020-11-16|Africa'], 'annotations': []}, {'cluster': 'c310', 'lineage': 'H.1', 'mutation': (614, 'D', 'G'), '# cluster': 9, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004278-CE1/2020|EPI_ISL_660162|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004365-CE1/2020|EPI_ISL_660227|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004276-CE1/2020|EPI_ISL_660160|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004275-CE1/2020|EPI_ISL_660159|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004280-CE1/2020|EPI_ISL_660163|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004277-CE1/2020|EPI_ISL_660161|2020-11-05|Africa', 'hCoV-19/South_Africa/KRISP-K004357-CE1/2020|EPI_ISL_660225|2020-11-02|Africa', 'hCoV-19/South_Africa/KRISP-K005328/2020|EPI_ISL_678617|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004281-CE1/2020|EPI_ISL_660164|2020-11-05|Africa'], 'annotations': []}, {'cluster': 'c320', 'lineage': 'B.1.1.67', 'mutation': (255, 'S', 'Y'), '# cluster': 1, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 240, 'epi_stop': 282, 'epi_seq': 'TLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004551/2020|EPI_ISL_660248|2020-10-27|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c320', 'lineage': 'B.1.1.67', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004551/2020|EPI_ISL_660248|2020-10-27|Africa'], 'annotations': []}, {'cluster': 'c320', 'lineage': 'H.1', 'mutation': (255, 'S', 'Y'), '# cluster': 4, '% lineage': 0.0, '% cluster': 0.6666666666666666, 'FC': 666666.6666666666, 'epi_start': 240, 'epi_stop': 282, 'epi_seq': 'TLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K005308/2020|EPI_ISL_678601|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004321/2020|EPI_ISL_660197|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004080/2020|EPI_ISL_635056|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004060/2020|EPI_ISL_635039|2020-10-20|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c320', 'lineage': 'H.1', 'mutation': (614, 'D', 'G'), '# cluster': 6, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K005308/2020|EPI_ISL_678601|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004321/2020|EPI_ISL_660197|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004080/2020|EPI_ISL_635056|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004060/2020|EPI_ISL_635039|2020-10-20|Africa', 'hCoV-19/South_Africa/KRISP-K003704/2020|EPI_ISL_602884|2020-10-04|Africa', 'hCoV-19/South_Africa/KRISP-K003712/2020|EPI_ISL_602892|2020-10-03|Africa'], 'annotations': []}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (614, 'D', 'G'), '# cluster': 23, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-0571/2020|EPI_ISL_498109|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-0570/2020|EPI_ISL_498108|2020-07-02|Africa', 'hCoV-19/South_Africa/KRISP-K002616/2020|EPI_ISL_535480|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K002658/2020|EPI_ISL_535526|2020-08-03|Africa', 'hCoV-19/South_Africa/KRISP-K001342/2020|EPI_ISL_515827|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001341/2020|EPI_ISL_515826|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001343/2020|EPI_ISL_515828|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K004616/2020|EPI_ISL_660638|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K002256/2020|EPI_ISL_515641|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K003334/2020|EPI_ISL_602726|2020-09-05|Africa', 'hCoV-19/South_Africa/KRISP-K004021/2020|EPI_ISL_635004|2020-10-13|Africa', 'hCoV-19/South_Africa/KRISP-K003991/2020|EPI_ISL_634979|2020-09-25|Africa', 'hCoV-19/South_Africa/KRISP-K004027/2020|EPI_ISL_635009|2020-10-14|Africa', 'hCoV-19/South_Africa/KRISP-K003720/2020|EPI_ISL_605787|2020-10-07|Africa', 'hCoV-19/South_Africa/KRISP-K003729/2020|EPI_ISL_602907|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K004540/2020|EPI_ISL_660238|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K002761/2020|EPI_ISL_529757|2020-08-15|Africa', 'hCoV-19/South_Africa/KRISP-0587/2020|EPI_ISL_498125|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0577/2020|EPI_ISL_498115|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0582/2020|EPI_ISL_498120|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0583/2020|EPI_ISL_498121|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-K003386/2020|EPI_ISL_602774|2020-09-10|Africa', 'hCoV-19/South_Africa/KRISP-K001087/2020|EPI_ISL_509339|2020-07-13|Africa'], 'annotations': []}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (769, 'G', 'V'), '# cluster': 22, '% lineage': 0.0, '% cluster': 0.9565217391304348, 'FC': 956521.7391304348, 'epi_start': 753, 'epi_stop': 788, 'epi_seq': 'LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI', '#linear': 25, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0571/2020|EPI_ISL_498109|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-0570/2020|EPI_ISL_498108|2020-07-02|Africa', 'hCoV-19/South_Africa/KRISP-K002616/2020|EPI_ISL_535480|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K002658/2020|EPI_ISL_535526|2020-08-03|Africa', 'hCoV-19/South_Africa/KRISP-K001342/2020|EPI_ISL_515827|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001341/2020|EPI_ISL_515826|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001343/2020|EPI_ISL_515828|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K004616/2020|EPI_ISL_660638|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K002256/2020|EPI_ISL_515641|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K003334/2020|EPI_ISL_602726|2020-09-05|Africa', 'hCoV-19/South_Africa/KRISP-K004021/2020|EPI_ISL_635004|2020-10-13|Africa', 'hCoV-19/South_Africa/KRISP-K003991/2020|EPI_ISL_634979|2020-09-25|Africa', 'hCoV-19/South_Africa/KRISP-K004027/2020|EPI_ISL_635009|2020-10-14|Africa', 'hCoV-19/South_Africa/KRISP-K003720/2020|EPI_ISL_605787|2020-10-07|Africa', 'hCoV-19/South_Africa/KRISP-K003729/2020|EPI_ISL_602907|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K004540/2020|EPI_ISL_660238|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K002761/2020|EPI_ISL_529757|2020-08-15|Africa', 'hCoV-19/South_Africa/KRISP-0577/2020|EPI_ISL_498115|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0582/2020|EPI_ISL_498120|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0583/2020|EPI_ISL_498121|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-K003386/2020|EPI_ISL_602774|2020-09-10|Africa', 'hCoV-19/South_Africa/KRISP-K001087/2020|EPI_ISL_509339|2020-07-13|Africa'], 'annotations': []}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (1078, 'A', 'S'), '# cluster': 22, '% lineage': 0.0, '% cluster': 0.9565217391304348, 'FC': 956521.7391304348, 'epi_start': 1054, 'epi_stop': 1096, 'epi_seq': 'QSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFV', '#linear': 23, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0571/2020|EPI_ISL_498109|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-0570/2020|EPI_ISL_498108|2020-07-02|Africa', 'hCoV-19/South_Africa/KRISP-K002616/2020|EPI_ISL_535480|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K002658/2020|EPI_ISL_535526|2020-08-03|Africa', 'hCoV-19/South_Africa/KRISP-K001342/2020|EPI_ISL_515827|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001341/2020|EPI_ISL_515826|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001343/2020|EPI_ISL_515828|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K004616/2020|EPI_ISL_660638|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K002256/2020|EPI_ISL_515641|2020-07-21|Africa', 'hCoV-19/South_Africa/KRISP-K003334/2020|EPI_ISL_602726|2020-09-05|Africa', 'hCoV-19/South_Africa/KRISP-K004021/2020|EPI_ISL_635004|2020-10-13|Africa', 'hCoV-19/South_Africa/KRISP-K003991/2020|EPI_ISL_634979|2020-09-25|Africa', 'hCoV-19/South_Africa/KRISP-K004027/2020|EPI_ISL_635009|2020-10-14|Africa', 'hCoV-19/South_Africa/KRISP-K003720/2020|EPI_ISL_605787|2020-10-07|Africa', 'hCoV-19/South_Africa/KRISP-K003729/2020|EPI_ISL_602907|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K004540/2020|EPI_ISL_660238|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K002761/2020|EPI_ISL_529757|2020-08-15|Africa', 'hCoV-19/South_Africa/KRISP-0587/2020|EPI_ISL_498125|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0577/2020|EPI_ISL_498115|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0582/2020|EPI_ISL_498120|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-0583/2020|EPI_ISL_498121|2020-07-09|Africa', 'hCoV-19/South_Africa/KRISP-K001087/2020|EPI_ISL_509339|2020-07-13|Africa'], 'annotations': []}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (155, 'S', 'T'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.043478260869565216, 'FC': 43478.260869565216, 'epi_start': 129, 'epi_stop': 171, 'epi_seq': 'KVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYV', '#linear': 14, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038063'], '#pubs linear': 8, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-0570/2020|EPI_ISL_498108|2020-07-02|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (1263, 'P', 'L'), '# cluster': 5, '% lineage': 0.0, '% cluster': 0.21739130434782608, 'FC': 217391.30434782608, 'epi_start': 1246, 'epi_stop': 1273, 'epi_seq': 'GCCSCGSCCKFDEDDSEPVLKGVKLHYT', '#linear': 18, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002616/2020|EPI_ISL_535480|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K002658/2020|EPI_ISL_535526|2020-08-03|Africa', 'hCoV-19/South_Africa/KRISP-K001342/2020|EPI_ISL_515827|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001341/2020|EPI_ISL_515826|2020-07-10|Africa', 'hCoV-19/South_Africa/KRISP-K001343/2020|EPI_ISL_515828|2020-07-10|Africa'], 'annotations': ['cytoplasm domain']}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (475, 'A', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.043478260869565216, 'FC': 43478.260869565216, 'epi_start': 457, 'epi_stop': 513, 'epi_seq': 'RKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 43, '#non-linear': 44, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036858', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 10, '#pubs non-linear': 26, 'sequences': ['hCoV-19/South_Africa/KRISP-K004616/2020|EPI_ISL_660638|2020-11-04|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (95, 'T', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.043478260869565216, 'FC': 43478.260869565216, 'epi_start': 81, 'epi_stop': 134, 'epi_seq': 'NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQ', '#linear': 16, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086'], '#pubs linear': 9, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-K003334/2020|EPI_ISL_602726|2020-09-05|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c326', 'lineage': 'B.1.1.56', 'mutation': (49, 'H', 'Y'), '# cluster': 6, '% lineage': 0.0, '% cluster': 0.2608695652173913, 'FC': 260869.5652173913, 'epi_start': 31, 'epi_stop': 66, 'epi_seq': 'SFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFH', '#linear': 26, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004021/2020|EPI_ISL_635004|2020-10-13|Africa', 'hCoV-19/South_Africa/KRISP-K003991/2020|EPI_ISL_634979|2020-09-25|Africa', 'hCoV-19/South_Africa/KRISP-K004027/2020|EPI_ISL_635009|2020-10-14|Africa', 'hCoV-19/South_Africa/KRISP-K003720/2020|EPI_ISL_605787|2020-10-07|Africa', 'hCoV-19/South_Africa/KRISP-K003729/2020|EPI_ISL_602907|2020-10-06|Africa', 'hCoV-19/South_Africa/KRISP-K004540/2020|EPI_ISL_660238|2020-10-18|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c329', 'lineage': 'B.1.1.119', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1779/2020|EPI_ISL_640112|2020-09-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GP-5223/2020|EPI_ISL_640102|2020-04-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0768/2020|EPI_ISL_640069|2020-07-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1532/2020|EPI_ISL_700465|2020-08-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0034/2020|EPI_ISL_640035|2020-08-20|Africa'], 'annotations': []}, {'cluster': 'c329', 'lineage': 'B.1.1.208', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-0289/2020|EPI_ISL_640068|2020-07-08|Africa'], 'annotations': []}, {'cluster': 'c329', 'lineage': 'B.1.1.37', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-0016/2020|EPI_ISL_640018|2020-08-11|Africa'], 'annotations': []}, {'cluster': 'c329', 'lineage': 'B.1.1.62', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-0129/2020|EPI_ISL_467481|2020-05-13|Africa', 'hCoV-19/South_Africa/KRISP-0137/2020|EPI_ISL_467489|2020-05-14|Africa', 'hCoV-19/South_Africa/KRISP-0125/2020|EPI_ISL_467477|2020-05-13|Africa', 'hCoV-19/South_Africa/R13317-20/2020|EPI_ISL_622939|2020-07-02|Africa', 'hCoV-19/South_Africa/R10752/2020|EPI_ISL_490302|2020-06-12|Africa', 'hCoV-19/South_Africa/R10166/2020|EPI_ISL_490260|2020-05-20|Africa', 'hCoV-19/South_Africa/R10755/2020|EPI_ISL_490303|2020-06-12|Africa'], 'annotations': []}, {'cluster': 'c334', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 8, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K001335/2020|EPI_ISL_515820|2020-07-19|Africa', 'hCoV-19/South_Africa/KRISP-0418/2020|EPI_ISL_495542|2020-07-02|Africa', 'hCoV-19/South_Africa/KRISP-K002692/2020|EPI_ISL_535554|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K004544/2020|EPI_ISL_660241|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-K003707/2020|EPI_ISL_602887|2020-10-04|Africa', 'hCoV-19/South_Africa/KRISP-K004539/2020|EPI_ISL_660237|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K002290/2020|EPI_ISL_515668|2020-07-23|Africa', 'hCoV-19/South_Africa/KRISP-K002302/2020|EPI_ISL_515679|2020-07-23|Africa'], 'annotations': []}, {'cluster': 'c334', 'lineage': 'B.1.1.206', 'mutation': (655, 'H', 'Y'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.125, 'FC': 125000.0, 'epi_start': 641, 'epi_stop': 689, 'epi_seq': 'NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVAS', '#linear': 14, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242'], '#pubs linear': 7, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-0418/2020|EPI_ISL_495542|2020-07-02|Africa'], 'annotations': []}, {'cluster': 'c334', 'lineage': 'B.1.1.206', 'mutation': (618, 'T', 'R'), '# cluster': 3, '% lineage': 0.0, '% cluster': 0.375, 'FC': 375000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 6, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004544/2020|EPI_ISL_660241|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-K003707/2020|EPI_ISL_602887|2020-10-04|Africa', 'hCoV-19/South_Africa/KRISP-K004539/2020|EPI_ISL_660237|2020-10-18|Africa'], 'annotations': []}, {'cluster': 'c342', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 9, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K003520/2020|EPI_ISL_602839|2020-09-25|Africa', 'hCoV-19/South_Africa/KRISP-K004543/2020|EPI_ISL_660240|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-K004352-CE1/2020|EPI_ISL_660224|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004597/2020|EPI_ISL_660627|2020-11-07|Africa', 'hCoV-19/South_Africa/KRISP-K005313/2020|EPI_ISL_678606|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-CH01110237/2020|EPI_ISL_736987|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-CH01110222/2020|EPI_ISL_736985|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-CH01110224/2020|EPI_ISL_736986|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K005322/2020|EPI_ISL_678612|2020-11-15|Africa'], 'annotations': []}, {'cluster': 'c342', 'lineage': 'B.1.1.206', 'mutation': (1237, 'M', 'I'), '# cluster': 5, '% lineage': 0.0, '% cluster': 0.5555555555555556, 'FC': 555555.5555555556, 'epi_start': 1202, 'epi_stop': 1255, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K005313/2020|EPI_ISL_678606|2020-10-29|Africa', 'hCoV-19/South_Africa/KRISP-CH01110237/2020|EPI_ISL_736987|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-CH01110222/2020|EPI_ISL_736985|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-CH01110224/2020|EPI_ISL_736986|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K005322/2020|EPI_ISL_678612|2020-11-15|Africa'], 'annotations': ['TM domain', 'cytoplasm domain']}, {'cluster': 'c347', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002377/2020|EPI_ISL_515743|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002338/2020|EPI_ISL_515712|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002333/2020|EPI_ISL_515708|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002325/2020|EPI_ISL_515701|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002326/2020|EPI_ISL_515702|2020-07-22|Africa'], 'annotations': []}, {'cluster': 'c347', 'lineage': 'B.1.1.206', 'mutation': (769, 'G', 'V'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.4, 'FC': 400000.00000000006, 'epi_start': 753, 'epi_stop': 788, 'epi_seq': 'LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI', '#linear': 25, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002325/2020|EPI_ISL_515701|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K002326/2020|EPI_ISL_515702|2020-07-22|Africa'], 'annotations': []}, {'cluster': 'c350', 'lineage': 'B.1.1.206', 'mutation': (153, 'M', 'I'), '# cluster': 8, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 129, 'epi_stop': 171, 'epi_seq': 'KVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYV', '#linear': 17, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038547'], '#pubs linear': 9, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-K004079/2020|EPI_ISL_635055|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004735/2020|EPI_ISL_660263|2020-10-21|Africa', 'hCoV-19/South_Africa/KRISP-K004078/2020|EPI_ISL_635054|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004542/2020|EPI_ISL_660239|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-EB00584394/2020|EPI_ISL_736988|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K004351-CE1/2020|EPI_ISL_660223|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004591/2020|EPI_ISL_660621|2020-11-07|Africa', 'hCoV-19/South_Africa/KRISP-K003688/2020|EPI_ISL_602870|2020-10-05|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c350', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 8, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004079/2020|EPI_ISL_635055|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004735/2020|EPI_ISL_660263|2020-10-21|Africa', 'hCoV-19/South_Africa/KRISP-K004078/2020|EPI_ISL_635054|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004542/2020|EPI_ISL_660239|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-EB00584394/2020|EPI_ISL_736988|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K004351-CE1/2020|EPI_ISL_660223|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K004591/2020|EPI_ISL_660621|2020-11-07|Africa', 'hCoV-19/South_Africa/KRISP-K003688/2020|EPI_ISL_602870|2020-10-05|Africa'], 'annotations': []}, {'cluster': 'c350', 'lineage': 'B.1.1.206', 'mutation': (574, 'D', 'Y'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.125, 'FC': 125000.0, 'epi_start': 561, 'epi_stop': 593, 'epi_seq': 'PFQQFGRDIADTTDAVRDPQTLEILDITPCSFG', '#linear': 15, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 6, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004591/2020|EPI_ISL_660621|2020-11-07|Africa'], 'annotations': []}, {'cluster': 'c371', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 11, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004626/2020|EPI_ISL_660642|2020-11-02|Africa', 'hCoV-19/South_Africa/KRISP-K004731/2020|EPI_ISL_660259|2020-10-20|Africa', 'hCoV-19/South_Africa/KRISP-K003737/2020|EPI_ISL_602914|2020-09-28|Africa', 'hCoV-19/South_Africa/KRISP-K004003/2020|EPI_ISL_634988|2020-09-28|Africa', 'hCoV-19/South_Africa/KRISP-K003509/2020|EPI_ISL_602832|2020-09-26|Africa', 'hCoV-19/South_Africa/KRISP-K004052/2020|EPI_ISL_635031|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004062/2020|EPI_ISL_635041|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K003511/2020|EPI_ISL_602833|2020-09-26|Africa', 'hCoV-19/South_Africa/KRISP-K003400/2020|EPI_ISL_602788|2020-09-11|Africa', 'hCoV-19/South_Africa/KRISP-K003547/2020|EPI_ISL_602863|2020-09-25|Africa', 'hCoV-19/South_Africa/KRISP-K004634/2020|EPI_ISL_660650|2020-11-02|Africa'], 'annotations': []}, {'cluster': 'c371', 'lineage': 'B.1.1.206', 'mutation': (184, 'G', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.09090909090909091, 'FC': 90909.09090909091, 'epi_start': 169, 'epi_stop': 203, 'epi_seq': 'EYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKI', '#linear': 12, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004731/2020|EPI_ISL_660259|2020-10-20|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c375', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 13, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K003364/2020|EPI_ISL_602755|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K003367/2020|EPI_ISL_602758|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K003366/2020|EPI_ISL_602757|2020-09-04|Africa', 'hCoV-19/South_Africa/LR00003/2020|EPI_ISL_515135|2020-07-03|Africa', 'hCoV-19/South_Africa/KRISP-K001392/2020|EPI_ISL_515876|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-K001384/2020|EPI_ISL_515868|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-K001398/2020|EPI_ISL_515881|2020-07-18|Africa', 'hCoV-19/South_Africa/LR00113/2020|EPI_ISL_514407|2020-07-20|Africa', 'hCoV-19/South_Africa/KRISP-K002218/2020|EPI_ISL_515615|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-K003401/2020|EPI_ISL_602789|2020-09-11|Africa', 'hCoV-19/South_Africa/L00181/2020|EPI_ISL_622959|2020-07-27|Africa', 'hCoV-19/South_Africa/L00161/2020|EPI_ISL_622964|2020-07-26|Africa', 'hCoV-19/South_Africa/LR00073/2020|EPI_ISL_514384|2020-07-13|Africa'], 'annotations': []}, {'cluster': 'c375', 'lineage': 'B.1.1.206', 'mutation': (1176, 'V', 'F'), '# cluster': 3, '% lineage': 0.0, '% cluster': 0.23076923076923078, 'FC': 230769.23076923078, 'epi_start': 1155, 'epi_stop': 1207, 'epi_seq': 'YFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE', '#linear': 32, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-K003364/2020|EPI_ISL_602755|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K003367/2020|EPI_ISL_602758|2020-09-04|Africa', 'hCoV-19/South_Africa/KRISP-K003366/2020|EPI_ISL_602757|2020-09-04|Africa'], 'annotations': ['heptapeptide repeat sequence 2']}, {'cluster': 'c375', 'lineage': 'B.1.1.206', 'mutation': (477, 'S', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.07692307692307693, 'FC': 76923.07692307694, 'epi_start': 458, 'epi_stop': 513, 'epi_seq': 'KSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 35, '#non-linear': 28, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038157'], '#pubs linear': 10, '#pubs non-linear': 17, 'sequences': ['hCoV-19/South_Africa/L00161/2020|EPI_ISL_622964|2020-07-26|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c375', 'lineage': 'B.1.1.54', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/Taiwan/NTU30/2020|EPI_ISL_534336|2020-08-11|Asia'], 'annotations': []}, {'cluster': 'c379', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002498/2020|EPI_ISL_535397|2020-08-05|Africa', 'hCoV-19/South_Africa/KRISP-K002769/2020|EPI_ISL_529764|2020-08-21|Africa', 'hCoV-19/South_Africa/UFS-VIRO-NGS-70/2020|EPI_ISL_912537|2020-07-14|Africa', 'hCoV-19/South_Africa/KRISP-K002700/2020|EPI_ISL_535561|2020-07-30|Africa', 'hCoV-19/South_Africa/KRISP-K002624/2020|EPI_ISL_535487|2020-08-01|Africa'], 'annotations': []}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (27, 'A', 'S'), '# cluster': 19, '% lineage': 0.046511627906976744, '% cluster': 1.0, 'FC': 21.49953775993816, 'epi_start': 13, 'epi_stop': 43, 'epi_seq': 'SQCVNLTTRTQLPPAYTNSFTRGVYYPDKVF', '#linear': 14, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 19, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 19, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 19, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 18, '% lineage': 0.9022198731501057, '% cluster': 0.9473684210526315, 'FC': 1.0500404604305962, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 18, '% lineage': 0.9022198731501057, '% cluster': 0.9473684210526315, 'FC': 1.0500404604305962, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 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'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 19, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 19, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 19, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 19, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': []}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 19, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007853/2020|EPI_ISL_860618|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007837/2020|EPI_ISL_860605|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007742/2020|EPI_ISL_825473|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007840/2020|EPI_ISL_860607|2020-12-24|Africa', 'hCoV-19/South_Africa/KRISP-K007737/2020|EPI_ISL_825474|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007720/2020|EPI_ISL_825476|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa', 'hCoV-19/South_Africa/KRISP-K007848/2020|EPI_ISL_860614|2020-12-25|Africa', 'hCoV-19/Mozambique/INS-K007918/2020|EPI_ISL_887440|2020-12-27|Africa', 'hCoV-19/SouthAfrica/KRISP-K007629/2020|EPI_ISL_825134|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-EG00467189/2020|EPI_ISL_736955|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007866/2020|EPI_ISL_860627|2020-12-18|Africa', 'hCoV-19/England/210241183/2021|EPI_ISL_837196|2021-01-12|Europe', 'hCoV-19/South_Africa/KRISP-K007792/2020|EPI_ISL_860566|2020-12-26|Africa', 'hCoV-19/South_Africa/KRISP-K007830/2020|EPI_ISL_860598|2020-12-21|Africa', 'hCoV-19/South_Africa/KRISP-K007766/2020|EPI_ISL_825471|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007751/2020|EPI_ISL_825470|2020-12-15|Africa'], 'annotations': []}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (240, 'T', '-'), '# cluster': 1, '% lineage': 0.0036997885835095136, '% cluster': 0.05263157894736842, 'FC': 14.22171998203072, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 22, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (242, 'L', '#'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.05263157894736842, 'FC': 52631.57894736842, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (243, 'A', '#'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.05263157894736842, 'FC': 52631.57894736842, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K007730/2020|EPI_ISL_825477|2020-12-15|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c38', 'lineage': 'B.1.351', 'mutation': (209, 'P', 'H'), '# cluster': 2, '% lineage': 0.0, '% cluster': 0.10526315789473684, 'FC': 105263.15789473684, 'epi_start': 186, 'epi_stop': 226, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL', '#linear': 45, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 14, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K007805/2021|EPI_ISL_860578|2021-01-02|Africa', 'hCoV-19/South_Africa/KRISP-K007841/2020|EPI_ISL_860608|2020-12-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c384', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K001403/2020|EPI_ISL_515886|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K002368/2020|EPI_ISL_515736|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-K001399/2020|EPI_ISL_515882|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K001404/2020|EPI_ISL_515887|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K001408/2020|EPI_ISL_515891|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K001402/2020|EPI_ISL_515885|2020-07-18|Africa', 'hCoV-19/South_Africa/KRISP-K002216/2020|EPI_ISL_515613|2020-07-18|Africa'], 'annotations': []}, {'cluster': 'c389', 'lineage': 'B.1.1.206', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002729/2020|EPI_ISL_529728|2020-08-14|Africa', 'hCoV-19/South_Africa/KRISP-0321/2020|EPI_ISL_487298|2020-06-24|Africa', 'hCoV-19/South_Africa/KRISP-K000582/2020|EPI_ISL_509238|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002862/2020|EPI_ISL_602676|2020-08-31|Africa', 'hCoV-19/South_Africa/KRISP-0331/2020|EPI_ISL_487302|2020-06-24|Africa'], 'annotations': []}, {'cluster': 'c389', 'lineage': 'B.1.1.206', 'mutation': (1237, 'M', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.2, 'FC': 200000.00000000003, 'epi_start': 1202, 'epi_stop': 1255, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0321/2020|EPI_ISL_487298|2020-06-24|Africa'], 'annotations': ['TM domain', 'cytoplasm domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 82, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-457/2020|EPI_ISL_745183|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7063-KRISP/2020|EPI_ISL_696492|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7013-KRISP/2020|EPI_ISL_696491|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3553-KRISP/2020|EPI_ISL_696481|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7042-KRISP/2020|EPI_ISL_696496|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 82, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/Tygerberg-457/2020|EPI_ISL_745183|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7063-KRISP/2020|EPI_ISL_696492|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7013-KRISP/2020|EPI_ISL_696491|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3553-KRISP/2020|EPI_ISL_696481|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7042-KRISP/2020|EPI_ISL_696496|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 82, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-457/2020|EPI_ISL_745183|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7063-KRISP/2020|EPI_ISL_696492|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7013-KRISP/2020|EPI_ISL_696491|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3553-KRISP/2020|EPI_ISL_696481|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7042-KRISP/2020|EPI_ISL_696496|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 82, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 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'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 82, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': 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'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/Tygerberg-457/2020|EPI_ISL_745183|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 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'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 82, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/Tygerberg-457/2020|EPI_ISL_745183|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7063-KRISP/2020|EPI_ISL_696492|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7013-KRISP/2020|EPI_ISL_696491|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3553-KRISP/2020|EPI_ISL_696481|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7042-KRISP/2020|EPI_ISL_696496|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 82, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/Tygerberg-457/2020|EPI_ISL_745183|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7063-KRISP/2020|EPI_ISL_696492|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7013-KRISP/2020|EPI_ISL_696491|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3553-KRISP/2020|EPI_ISL_696481|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7042-KRISP/2020|EPI_ISL_696496|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 82, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 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'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 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'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': []}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 82, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/Tygerberg-457/2020|EPI_ISL_745183|2020-12-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7063-KRISP/2020|EPI_ISL_696492|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7013-KRISP/2020|EPI_ISL_696491|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3553-KRISP/2020|EPI_ISL_696481|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7042-KRISP/2020|EPI_ISL_696496|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': []}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (246, 'R', 'I'), '# cluster': 81, '% lineage': 0.003171247357293869, '% cluster': 0.9878048780487805, 'FC': 311.3896133533047, 'epi_start': 233, 'epi_stop': 282, 'epi_seq': 'INITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 19, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1037008', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038547', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 11, '#pubs non-linear': 6, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-1067/2020|EPI_ISL_700428|2020-10-30|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1358/2020|EPI_ISL_700432|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0807/2020|EPI_ISL_700492|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0669/2020|EPI_ISL_700482|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1071/2020|EPI_ISL_700540|2020-10-26|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7035-KRISP/2020|EPI_ISL_696501|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0662/2020|EPI_ISL_700460|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1377/2020|EPI_ISL_700505|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1349/2020|EPI_ISL_700531|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7032-KRISP/2020|EPI_ISL_696520|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0633/2020|EPI_ISL_700478|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7001-KRISP/2020|EPI_ISL_696458|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1314/2020|EPI_ISL_700458|2020-11-02|Africa', 'hCoV-19/SouthAfrica/KRISP-K006840/2020|EPI_ISL_825109|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1042/2020|EPI_ISL_700563|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1079/2020|EPI_ISL_700464|2020-10-29|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1198/2020|EPI_ISL_700496|2020-11-03|Africa', 'hCoV-19/South_Africa/KRISP-EC-K005341/2020|EPI_ISL_678626|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1912-KRISP/2020|EPI_ISL_696461|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1389/2020|EPI_ISL_700520|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1390/2020|EPI_ISL_700589|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7036-KRISP/2020|EPI_ISL_696507|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3467-KRISP/2020|EPI_ISL_696471|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1362/2020|EPI_ISL_700550|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7038-KRISP/2020|EPI_ISL_696497|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1851-KRISP/2020|EPI_ISL_696466|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1291/2020|EPI_ISL_700449|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1028/2020|EPI_ISL_700590|2020-10-27|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1047/2020|EPI_ISL_700539|2020-10-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7003-KRISP/2020|EPI_ISL_696478|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0684/2020|EPI_ISL_700535|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7012-KRISP/2020|EPI_ISL_696463|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0677/2020|EPI_ISL_700469|2020-10-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3569-KRISP/2020|EPI_ISL_696488|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1376/2020|EPI_ISL_700485|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0659/2020|EPI_ISL_700581|2020-10-22|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0676/2020|EPI_ISL_700510|2020-10-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1344/2020|EPI_ISL_700529|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0812/2020|EPI_ISL_700551|2020-10-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1148/2020|EPI_ISL_700467|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1145/2020|EPI_ISL_700554|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3556-KRISP/2020|EPI_ISL_696473|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1396-KRISP/2020|EPI_ISL_696472|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7063-KRISP/2020|EPI_ISL_696492|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7013-KRISP/2020|EPI_ISL_696491|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3553-KRISP/2020|EPI_ISL_696481|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7042-KRISP/2020|EPI_ISL_696496|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7065-KRISP/2020|EPI_ISL_696503|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7025-KRISP/2020|EPI_ISL_696500|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1395-KRISP/2020|EPI_ISL_696474|2020-11-18|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7000-KRISP/2020|EPI_ISL_696490|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0660/2020|EPI_ISL_700438|2020-10-22|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352416/2020|EPI_ISL_736928|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0666/2020|EPI_ISL_700587|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1378/2020|EPI_ISL_700542|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7043-KRISP/2020|EPI_ISL_696494|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7067-KRISP/2020|EPI_ISL_696495|2020-11-25|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1385/2020|EPI_ISL_700470|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1100/2020|EPI_ISL_700431|2020-11-03|Africa', 'hCoV-19/South_Africa/N00390/2020|EPI_ISL_712081|2020-10-08|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7037-KRISP/2020|EPI_ISL_696512|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1131/2020|EPI_ISL_700487|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2101-KRISP/2020|EPI_ISL_696455|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1363/2020|EPI_ISL_700490|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2090-KRISP/2020|EPI_ISL_696452|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3558-KRISP/2020|EPI_ISL_696459|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7058-KRISP/2020|EPI_ISL_696515|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1383/2020|EPI_ISL_700456|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1380/2020|EPI_ISL_700524|2020-11-13|Africa', 'hCoV-19/South_Africa/KRISP-WC-SA04352428/2020|EPI_ISL_736929|2020-11-24|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1388/2020|EPI_ISL_700475|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7034-KRISP/2020|EPI_ISL_696521|2020-11-24|Africa', 'hCoV-19/England/ALDP-C8FEC7/2020|EPI_ISL_777292|2020-12-11|Europe', 'hCoV-19/South_Africa/NHLS-UCT-GS-1350/2020|EPI_ISL_700440|2020-11-06|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1107/2020|EPI_ISL_700504|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-0671/2020|EPI_ISL_700483|2020-10-23|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1365/2020|EPI_ISL_700502|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1269/2020|EPI_ISL_700461|2020-11-05|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1454-KRISP/2020|EPI_ISL_696470|2020-11-19|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1030/2020|EPI_ISL_700498|2020-10-27|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (892, 'A', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.012195121951219513, 'FC': 12195.121951219513, 'epi_start': 869, 'epi_stop': 911, 'epi_seq': 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['hCoV-19/South_Africa/NHLS-UCT-GS-1628-KRISP/2020|EPI_ISL_696475|2020-11-19|Africa'], 'annotations': ['TM domain']}, {'cluster': 'c39', 'lineage': 'B.1.351', 'mutation': (1223, 'G', 'S'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.012195121951219513, 'FC': 12195.121951219513, 'epi_start': 1202, 'epi_stop': 1244, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCL', '#linear': 13, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037942', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1037935', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037968', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 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'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/N00335/2020|EPI_ISL_712076|2020-11-05|Africa', 'hCoV-19/SouthAfrica/KRISP-K006879/2020|EPI_ISL_825126|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-BH02956605/2020|EPI_ISL_736933|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007732/2020|EPI_ISL_825454|2020-12-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3560-KRISP/2020|EPI_ISL_696453|2020-11-20|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c4', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 5, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 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'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/N00335/2020|EPI_ISL_712076|2020-11-05|Africa', 'hCoV-19/SouthAfrica/KRISP-K006879/2020|EPI_ISL_825126|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-BH02956605/2020|EPI_ISL_736933|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007732/2020|EPI_ISL_825454|2020-12-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3560-KRISP/2020|EPI_ISL_696453|2020-11-20|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c4', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 5, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/N00335/2020|EPI_ISL_712076|2020-11-05|Africa', 'hCoV-19/SouthAfrica/KRISP-K006879/2020|EPI_ISL_825126|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-BH02956605/2020|EPI_ISL_736933|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007732/2020|EPI_ISL_825454|2020-12-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3560-KRISP/2020|EPI_ISL_696453|2020-11-20|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c4', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/N00335/2020|EPI_ISL_712076|2020-11-05|Africa', 'hCoV-19/SouthAfrica/KRISP-K006879/2020|EPI_ISL_825126|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-BH02956605/2020|EPI_ISL_736933|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007732/2020|EPI_ISL_825454|2020-12-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3560-KRISP/2020|EPI_ISL_696453|2020-11-20|Africa'], 'annotations': []}, {'cluster': 'c4', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 5, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/N00335/2020|EPI_ISL_712076|2020-11-05|Africa', 'hCoV-19/SouthAfrica/KRISP-K006879/2020|EPI_ISL_825126|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-BH02956605/2020|EPI_ISL_736933|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007732/2020|EPI_ISL_825454|2020-12-15|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3560-KRISP/2020|EPI_ISL_696453|2020-11-20|Africa'], 'annotations': []}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 12, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 12, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 12, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 12, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 12, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 12, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 12, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 12, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 12, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': []}, {'cluster': 'c45', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 12, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K004630/2020|EPI_ISL_660646|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7019-KRISP/2020|EPI_ISL_696486|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1387/2020|EPI_ISL_700420|2020-11-12|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1381/2020|EPI_ISL_700436|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1326/2020|EPI_ISL_700579|2020-11-04|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1392-KRISP/2020|EPI_ISL_696460|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1373/2020|EPI_ISL_700541|2020-11-13|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7017-KRISP/2020|EPI_ISL_696482|2020-11-20|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-1312/2020|EPI_ISL_700500|2020-11-02|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-7021-KRISP/2020|EPI_ISL_696479|2020-11-20|Africa', 'hCoV-19/South_Africa/KRISP-K004599/2020|EPI_ISL_660629|2020-11-06|Africa', 'hCoV-19/Sweden/20-13194/2020|EPI_ISL_766709|2020-12-24|Europe'], 'annotations': []}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 7, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 7, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 7, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 7, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 7, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 7, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 7, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 6, '% lineage': 0.9191331923890064, '% cluster': 0.8571428571428571, 'FC': 0.9325546413576217, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': []}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 7, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-BH02956385/2020|EPI_ISL_736932|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007725/2020|EPI_ISL_825450|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K007740/2020|EPI_ISL_825481|2020-12-14|Africa', 'hCoV-19/South_Africa/KRISP-K007729/2020|EPI_ISL_825451|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-BH02956196/2020|EPI_ISL_736931|2020-11-25|Africa', 'hCoV-19/South_Africa/KRISP-K007721/2020|EPI_ISL_825455|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': []}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (76, 'T', 'I'), '# cluster': 1, '% lineage': 0.0005285412262156448, '% cluster': 0.14285714285714285, 'FC': 269.77529941921307, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 12, '#non-linear': 1, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038547'], '#pubs linear': 6, '#pubs non-linear': 1, 'sequences': ['hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c46', 'lineage': 'B.1.351', 'mutation': (938, 'L', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.14285714285714285, 'FC': 142857.14285714287, 'epi_start': 906, 'epi_stop': 955, 'epi_seq': 'FNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQN', '#linear': 30, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/SouthAfrica/KRISP-K007633/2020|EPI_ISL_825137|2020-12-17|Africa'], 'annotations': ['heptapeptide repeat sequence 1']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 7, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 7, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 7, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 7, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 7, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 7, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 7, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 7, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': []}, {'cluster': 'c47', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 7, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-K007804/2021|EPI_ISL_860577|2021-01-03|Africa', 'hCoV-19/South_Africa/KRISP-K007780/2021|EPI_ISL_860557|2021-01-05|Africa', 'hCoV-19/South_Africa/KRISP-K007731/2020|EPI_ISL_825478|2020-12-15|Africa', 'hCoV-19/SouthAfrica/KRISP-K007628/2020|EPI_ISL_825133|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007769/2020|EPI_ISL_825442|2020-12-18|Africa', 'hCoV-19/South_Africa/KRISP-K007726/2020|EPI_ISL_825447|2020-12-15|Africa', 'hCoV-19/South_Africa/KRISP-K004349-CS1/2020|EPI_ISL_660222|2020-11-09|Africa'], 'annotations': []}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (80, 'D', 'A'), '# cluster': 5, '% lineage': 0.9978858350951374, '% cluster': 1.0, 'FC': 1.0021176398270262, 'epi_start': 63, 'epi_stop': 93, 'epi_seq': 'TWFHAIHVSGTNGTKRFDNPVLPFNDGVYFA', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (215, 'D', 'G'), '# cluster': 5, '% lineage': 0.991014799154334, '% cluster': 1.0, 'FC': 1.0090656484521563, 'epi_start': 186, 'epi_stop': 233, 'epi_seq': 'FKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGI', '#linear': 26, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038242'], '#pubs linear': 14, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (241, 'L', '-'), '# cluster': 5, '% lineage': 0.903276955602537, '% cluster': 1.0, 'FC': 1.1070789382133697, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 24, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (242, 'L', '-'), '# cluster': 5, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (243, 'A', '-'), '# cluster': 5, '% lineage': 0.9022198731501057, '% cluster': 1.0, 'FC': 1.1083760415656294, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (417, 'K', 'N'), '# cluster': 5, '% lineage': 0.9920718816067653, '% cluster': 1.0, 'FC': 1.007990459713399, 'epi_start': 401, 'epi_stop': 435, 'epi_seq': 'VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIA', '#linear': 22, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037842', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038141', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037012', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 32, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['Receptor binding domain']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (484, 'E', 'K'), '# cluster': 5, '% lineage': 0.9133192389006343, '% cluster': 1.0, 'FC': 1.0949062085864891, 'epi_start': 466, 'epi_stop': 513, 'epi_seq': 'RDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL', '#linear': 24, '#non-linear': 59, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037844', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038381', 'http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1038392', 'http://www.iedb.org/reference/1038094', 'http://www.iedb.org/reference/1037909', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1038480', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038140', 'http://www.iedb.org/reference/1038157', 'http://www.iedb.org/reference/1038243', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1036941', 'http://www.iedb.org/reference/1037938', 'http://www.iedb.org/reference/1037013', 'http://www.iedb.org/reference/1037156', 'http://www.iedb.org/reference/1038033', 'http://www.iedb.org/reference/1038249', 'http://www.iedb.org/reference/1037473', 'http://www.iedb.org/reference/1037865', 'http://www.iedb.org/reference/1038391', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037735', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038001', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038415', 'http://www.iedb.org/reference/1038078', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 15, '#pubs non-linear': 39, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (501, 'N', 'Y'), '# cluster': 5, '% lineage': 0.9191331923890064, '% cluster': 1.0, 'FC': 1.0879804149172254, 'epi_start': 467, 'epi_stop': 541, 'epi_seq': 'DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF', '#linear': 16, '#non-linear': 53, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038086'], 'pubs non-linear': ['http://www.iedb.org/reference/1038159', 'http://www.iedb.org/reference/1038379', 'http://www.iedb.org/reference/1038548', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038064', 'http://www.iedb.org/reference/1036880', 'http://www.iedb.org/reference/1037444', 'http://www.iedb.org/reference/1038474', 'http://www.iedb.org/reference/1038081', 'http://www.iedb.org/reference/1036942', 'http://www.iedb.org/reference/1037443', 'http://www.iedb.org/reference/1037522', 'http://www.iedb.org/reference/1038079', 'http://www.iedb.org/reference/1037105', 'http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1037575', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1037106', 'http://www.iedb.org/reference/1038378', 'http://www.iedb.org/reference/1038008', 'http://www.iedb.org/reference/1038035', 'http://www.iedb.org/reference/1037720', 'http://www.iedb.org/reference/1038500', 'http://www.iedb.org/reference/1037545', 'http://www.iedb.org/reference/1038390', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1036918', 'http://www.iedb.org/reference/1038077', 'http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038007'], '#pubs linear': 9, '#pubs non-linear': 30, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': ['Receptor binding domain', 'Receptor binding motif']}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.9973572938689218, '% cluster': 1.0, 'FC': 1.0026487032266314, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': []}, {'cluster': 'c49', 'lineage': 'B.1.351', 'mutation': (701, 'A', 'V'), '# cluster': 5, '% lineage': 0.936046511627907, '% cluster': 1.0, 'FC': 1.0683218400536865, 'epi_start': 684, 'epi_stop': 726, 'epi_seq': 'ARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI', '#linear': 14, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 7, '#pubs non-linear': 2, 'sequences': ['hCoV-19/South_Africa/KRISP-GI00293257/2020|EPI_ISL_736956|2020-11-24|Africa', 'hCoV-19/South_Africa/KRISP-K005330/2020|EPI_ISL_678618|2020-11-17|Africa', 'hCoV-19/South_Africa/KRISP-K007768/2020|EPI_ISL_825443|2020-12-18|Africa', 'hCoV-19/Japan/IC-0527/2020|EPI_ISL_779210|2020-12-00|Asia', 'hCoV-19/Netherlands/LI-RIVM-10606/2021|EPI_ISL_904753|2021-01-13|Europe'], 'annotations': []}, {'cluster': 'c65', 'lineage': 'B.1.140', 'mutation': (614, 'D', 'G'), '# cluster': 7, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-0408/2020|EPI_ISL_495533|2020-06-23|Africa', 'hCoV-19/South_Africa/KRISP-0405/2020|EPI_ISL_495530|2020-06-23|Africa', 'hCoV-19/South_Africa/KRISP-0402/2020|EPI_ISL_495527|2020-06-23|Africa', 'hCoV-19/South_Africa/KRISP-0549/2020|EPI_ISL_498088|2020-07-15|Africa', 'hCoV-19/South_Africa/KRISP-K002313/2020|EPI_ISL_515689|2020-07-22|Africa', 'hCoV-19/South_Africa/KRISP-0383/2020|EPI_ISL_495524|2020-06-25|Africa', 'hCoV-19/South_Africa/KRISP-K002209/2020|EPI_ISL_515606|2020-07-24|Africa'], 'annotations': []}, {'cluster': 'c65', 'lineage': 'B.1.140', 'mutation': (865, 'L', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.14285714285714285, 'FC': 142857.14285714287, 'epi_start': 832, 'epi_stop': 882, 'epi_seq': 'GFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTI', '#linear': 20, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037697', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037251', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 13, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-0383/2020|EPI_ISL_495524|2020-06-25|Africa'], 'annotations': []}, {'cluster': 'c65', 'lineage': 'B.1.140', 'mutation': (13, 'S', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.14285714285714285, 'FC': 142857.14285714287, 'epi_start': 1, 'epi_stop': 27, 'epi_seq': 'MFVFLVLLPLVSSQCVNLTTRTQLPPA', '#linear': 10, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037968'], 'pubs non-linear': [], '#pubs linear': 5, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K002209/2020|EPI_ISL_515606|2020-07-24|Africa'], 'annotations': ['signal peptide at N-terminus']}, {'cluster': 'c72', 'lineage': 'B.1.106', 'mutation': (614, 'D', 'G'), '# cluster': 11, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K001122/2020|EPI_ISL_515801|2020-07-16|Africa', 'hCoV-19/South_Africa/KRISP-K000637/2020|EPI_ISL_509287|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-K002205/2020|EPI_ISL_515603|2020-07-16|Africa', 'hCoV-19/South_Africa/KRISP-0373/2020|EPI_ISL_487324|2020-06-19|Africa', 'hCoV-19/South_Africa/KRISP-K002201/2020|EPI_ISL_515599|2020-07-01|Africa', 'hCoV-19/South_Africa/KRISP-K001345/2020|EPI_ISL_515830|2020-07-13|Africa', 'hCoV-19/South_Africa/KRISP-0487/2020|EPI_ISL_495562|2020-07-03|Africa', 'hCoV-19/South_Africa/KRISP-K001406/2020|EPI_ISL_515889|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-K001401/2020|EPI_ISL_515884|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-K001400/2020|EPI_ISL_515883|2020-07-17|Africa', 'hCoV-19/South_Africa/KRISP-K002244/2020|EPI_ISL_515635|2020-07-20|Africa'], 'annotations': []}, {'cluster': 'c72', 'lineage': 'B.1.106', 'mutation': (769, 'G', 'V'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.09090909090909091, 'FC': 90909.09090909091, 'epi_start': 753, 'epi_stop': 788, 'epi_seq': 'LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI', '#linear': 25, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K001345/2020|EPI_ISL_515830|2020-07-13|Africa'], 'annotations': []}, {'cluster': 'c73', 'lineage': 'B.1.106', 'mutation': (614, 'D', 'G'), '# cluster': 17, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-0196/2020|EPI_ISL_482712|2020-06-08|Africa', 'hCoV-19/South_Africa/KRISP-0163/2020|EPI_ISL_467513|2020-06-01|Africa', 'hCoV-19/South_Africa/KRISP-0191/2020|EPI_ISL_482710|2020-06-04|Africa', 'hCoV-19/South_Africa/KRISP-0193/2020|EPI_ISL_482848|2020-06-03|Africa', 'hCoV-19/South_Africa/KRISP-0194/2020|EPI_ISL_482849|2020-06-06|Africa', 'hCoV-19/South_Africa/KRISP-0195/2020|EPI_ISL_482850|2020-06-07|Africa', 'hCoV-19/South_Africa/KRISP-0162/2020|EPI_ISL_467512|2020-06-01|Africa', 'hCoV-19/South_Africa/KRISP-0158/2020|EPI_ISL_467508|2020-05-28|Africa', 'hCoV-19/South_Africa/KRISP-0173/2020|EPI_ISL_467523|2020-06-02|Africa', 'hCoV-19/South_Africa/KRISP-0171/2020|EPI_ISL_467521|2020-06-02|Africa', 'hCoV-19/South_Africa/KRISP-0174/2020|EPI_ISL_467524|2020-06-04|Africa', 'hCoV-19/South_Africa/KRISP-0167/2020|EPI_ISL_467517|2020-06-02|Africa', 'hCoV-19/South_Africa/KRISP-0161/2020|EPI_ISL_467511|2020-06-01|Africa', 'hCoV-19/South_Africa/KRISP-0164/2020|EPI_ISL_467514|2020-06-01|Africa', 'hCoV-19/South_Africa/KRISP-0168/2020|EPI_ISL_467518|2020-05-28|Africa', 'hCoV-19/South_Africa/KRISP-0172/2020|EPI_ISL_467522|2020-06-02|Africa', 'hCoV-19/South_Africa/KRISP-0192/2020|EPI_ISL_482711|2020-06-04|Africa'], 'annotations': []}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (176, 'L', 'F'), '# cluster': 1, '% lineage': 0.0003860893439341074, '% cluster': 0.043478260869565216, 'FC': 112.32099656291838, 'epi_start': 161, 'epi_stop': 193, 'epi_seq': 'SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFV', '#linear': 35, '#non-linear': 3, 'pubs linear': ['http://www.iedb.org/reference/1037960', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1036944'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086'], '#pubs linear': 14, '#pubs non-linear': 1, 'sequences': ['hCoV-19/England/QEUH-AF7600/2020|EPI_ISL_662854|2020-10-29|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (222, 'A', 'V'), '# cluster': 23, '% lineage': 0.9940656637876795, '% cluster': 1.0, 'FC': 1.0059687508176893, 'epi_start': 204, 'epi_stop': 235, 'epi_seq': 'YSKHTPINLVRDLPQGFSALEPLVDLPIGINI', '#linear': 23, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/QEUH-AF7600/2020|EPI_ISL_662854|2020-10-29|Europe', 'hCoV-19/England/QEUH-9F4895/2020|EPI_ISL_588386|2020-09-25|Europe', 'hCoV-19/Iceland/6013/2020|EPI_ISL_829692|2020-10-12|Europe', 'hCoV-19/England/QEUH-A63A4F/2020|EPI_ISL_628659|2020-10-12|Europe', 'hCoV-19/Spain/RI-IBV-99010996/2020|EPI_ISL_732819|2020-09-06|Europe', 'hCoV-19/Netherlands/ZH-EMC-750/2020|EPI_ISL_632591|2020-09-24|Europe', 'hCoV-19/England/MILK-A47768/2020|EPI_ISL_598365|2020-10-05|Europe', 'hCoV-19/England/CAMC-A65096/2020|EPI_ISL_608368|2020-10-11|Europe', 'hCoV-19/England/MILK-ACC024/2020|EPI_ISL_629208|2020-10-21|Europe', 'hCoV-19/England/ALDP-BBA592/2020|EPI_ISL_702517|2020-11-20|Europe', 'hCoV-19/Wales/PHWC-49460B/2020|EPI_ISL_726143|2020-11-20|Europe', 'hCoV-19/England/204691035/2020|EPI_ISL_693433|2020-11-11|Europe', 'hCoV-19/Scotland/CVR4004/2020|EPI_ISL_535104|2020-08-29|Europe', 'hCoV-19/England/MILK-ABBF76/2020|EPI_ISL_631130|2020-10-20|Europe', 'hCoV-19/England/ALDP-B747AD/2020|EPI_ISL_662045|2020-11-12|Europe', 'hCoV-19/England/CAMC-A80D70/2020|EPI_ISL_610912|2020-10-13|Europe', 'hCoV-19/England/QEUH-A0C87B/2020|EPI_ISL_599280|2020-10-03|Europe', 'hCoV-19/England/QEUH-AE1AFE/2020|EPI_ISL_633553|2020-10-24|Europe', 'hCoV-19/Wales/PHWC-4A49A5/2020|EPI_ISL_763409|2020-12-09|Europe', 'hCoV-19/England/QEUH-A5E081/2020|EPI_ISL_597315|2020-10-12|Europe', 'hCoV-19/England/TFCI-26FEA47/2020|EPI_ISL_868794|2020-10-30|Europe', 'hCoV-19/Ireland/KY-NVRL-72IRL47632/2020|EPI_ISL_578219|2020-08-19|Europe', 'hCoV-19/Luxembourg/LNS0642518/2020|EPI_ISL_739809|2020-11-03|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (245, 'H', 'Y'), '# cluster': 1, '% lineage': 0.001930446719670537, '% cluster': 0.043478260869565216, 'FC': 22.51072236514071, 'epi_start': 231, 'epi_stop': 282, 'epi_seq': 'IGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 9, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1037008', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038547', 'http://www.iedb.org/reference/1038086'], '#pubs linear': 11, '#pubs non-linear': 5, 'sequences': ['hCoV-19/England/QEUH-AF7600/2020|EPI_ISL_662854|2020-10-29|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (614, 'D', 'G'), '# cluster': 23, '% lineage': 0.9998284047360293, '% cluster': 1.0, 'FC': 1.0001706243716804, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/England/QEUH-AF7600/2020|EPI_ISL_662854|2020-10-29|Europe', 'hCoV-19/England/QEUH-9F4895/2020|EPI_ISL_588386|2020-09-25|Europe', 'hCoV-19/Iceland/6013/2020|EPI_ISL_829692|2020-10-12|Europe', 'hCoV-19/England/QEUH-A63A4F/2020|EPI_ISL_628659|2020-10-12|Europe', 'hCoV-19/Spain/RI-IBV-99010996/2020|EPI_ISL_732819|2020-09-06|Europe', 'hCoV-19/Netherlands/ZH-EMC-750/2020|EPI_ISL_632591|2020-09-24|Europe', 'hCoV-19/England/MILK-A47768/2020|EPI_ISL_598365|2020-10-05|Europe', 'hCoV-19/England/CAMC-A65096/2020|EPI_ISL_608368|2020-10-11|Europe', 'hCoV-19/England/MILK-ACC024/2020|EPI_ISL_629208|2020-10-21|Europe', 'hCoV-19/England/ALDP-BBA592/2020|EPI_ISL_702517|2020-11-20|Europe', 'hCoV-19/Wales/PHWC-49460B/2020|EPI_ISL_726143|2020-11-20|Europe', 'hCoV-19/England/204691035/2020|EPI_ISL_693433|2020-11-11|Europe', 'hCoV-19/Scotland/CVR4004/2020|EPI_ISL_535104|2020-08-29|Europe', 'hCoV-19/England/MILK-ABBF76/2020|EPI_ISL_631130|2020-10-20|Europe', 'hCoV-19/England/ALDP-B747AD/2020|EPI_ISL_662045|2020-11-12|Europe', 'hCoV-19/England/CAMC-A80D70/2020|EPI_ISL_610912|2020-10-13|Europe', 'hCoV-19/England/QEUH-A0C87B/2020|EPI_ISL_599280|2020-10-03|Europe', 'hCoV-19/England/QEUH-AE1AFE/2020|EPI_ISL_633553|2020-10-24|Europe', 'hCoV-19/Wales/PHWC-4A49A5/2020|EPI_ISL_763409|2020-12-09|Europe', 'hCoV-19/England/QEUH-A5E081/2020|EPI_ISL_597315|2020-10-12|Europe', 'hCoV-19/England/TFCI-26FEA47/2020|EPI_ISL_868794|2020-10-30|Europe', 'hCoV-19/Ireland/KY-NVRL-72IRL47632/2020|EPI_ISL_578219|2020-08-19|Europe', 'hCoV-19/Luxembourg/LNS0642518/2020|EPI_ISL_739809|2020-11-03|Europe'], 'annotations': []}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (1163, 'D', 'Y'), '# cluster': 1, '% lineage': 0.029457186981639308, '% cluster': 0.043478260869565216, 'FC': 1.4759313224763064, 'epi_start': 1135, 'epi_stop': 1184, 'epi_seq': 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'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 6, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/QEUH-A63A4F/2020|EPI_ISL_628659|2020-10-12|Europe', 'hCoV-19/Spain/RI-IBV-99010996/2020|EPI_ISL_732819|2020-09-06|Europe'], 'annotations': ['heptapeptide repeat sequence 2']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (678, 'T', 'I'), '# cluster': 1, '% lineage': 0.0005147857919121432, '% cluster': 0.043478260869565216, 'FC': 84.29518911015509, 'epi_start': 647, 'epi_stop': 695, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAY', '#linear': 27, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 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'sequences': ['hCoV-19/Netherlands/ZH-EMC-750/2020|EPI_ISL_632591|2020-09-24|Europe'], 'annotations': []}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (262, 'A', 'S'), '# cluster': 2, '% lineage': 0.024666819195790196, '% cluster': 0.08695652173913043, 'FC': 3.525099687530157, 'epi_start': 240, 'epi_stop': 282, 'epi_seq': 'TLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 15, '#non-linear': 4, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086'], '#pubs linear': 8, '#pubs non-linear': 1, 'sequences': ['hCoV-19/England/MILK-ACC024/2020|EPI_ISL_629208|2020-10-21|Europe', 'hCoV-19/England/ALDP-BBA592/2020|EPI_ISL_702517|2020-11-20|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (272, 'P', 'L'), '# cluster': 2, '% lineage': 0.02438082708917234, '% cluster': 0.08695652173913043, 'FC': 3.566448134551275, 'epi_start': 240, 'epi_stop': 285, 'epi_seq': 'TLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTI', '#linear': 19, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037942', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037137', 'http://www.iedb.org/reference/1037949', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037363', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037085', 'http://www.iedb.org/reference/1038382', 'http://www.iedb.org/reference/1037882', 'http://www.iedb.org/reference/1037935', 'http://www.iedb.org/reference/1038013', 'http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1037576', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037971', 'http://www.iedb.org/reference/1037941', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 23, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/MILK-ACC024/2020|EPI_ISL_629208|2020-10-21|Europe', 'hCoV-19/England/ALDP-BBA592/2020|EPI_ISL_702517|2020-11-20|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (18, 'L', 'F'), '# cluster': 5, '% lineage': 0.7797431790882572, '% cluster': 0.21739130434782608, 'FC': 0.27879823944568377, 'epi_start': 1, 'epi_stop': 34, 'epi_seq': 'MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTR', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 4, 'sequences': ['hCoV-19/England/MILK-ABBF76/2020|EPI_ISL_631130|2020-10-20|Europe', 'hCoV-19/England/ALDP-B747AD/2020|EPI_ISL_662045|2020-11-12|Europe', 'hCoV-19/England/CAMC-A80D70/2020|EPI_ISL_610912|2020-10-13|Europe', 'hCoV-19/England/QEUH-A0C87B/2020|EPI_ISL_599280|2020-10-03|Europe', 'hCoV-19/England/QEUH-AE1AFE/2020|EPI_ISL_633553|2020-10-24|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (561, 'P', 'S'), '# cluster': 1, '% lineage': 0.0013155636904421438, '% cluster': 0.043478260869565216, 'FC': 33.02404675535586, 'epi_start': 544, 'epi_stop': 578, 'epi_seq': 'NGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRD', '#linear': 34, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037435', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1036856', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/ALDP-B747AD/2020|EPI_ISL_662045|2020-11-12|Europe'], 'annotations': []}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (241, 'L', '-'), '# cluster': 1, '% lineage': 7.149802665446433e-05, '% cluster': 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'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 10, '#pubs non-linear': 2, 'sequences': ['hCoV-19/Luxembourg/LNS0642518/2020|EPI_ISL_739809|2020-11-03|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177', 'mutation': (243, 'A', '-'), '# cluster': 1, '% lineage': 0.00020019447463250013, '% cluster': 0.043478260869565216, 'FC': 216.10067050291607, 'epi_start': 224, 'epi_stop': 282, 'epi_seq': 'EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN', '#linear': 21, '#non-linear': 10, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038478', 'http://www.iedb.org/reference/1038477', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086', 'http://www.iedb.org/reference/1038065', 'http://www.iedb.org/reference/1038085'], '#pubs linear': 11, '#pubs non-linear': 3, 'sequences': ['hCoV-19/Luxembourg/LNS0642518/2020|EPI_ISL_739809|2020-11-03|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177.1', 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'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/QEUH-AAB3D7/2020|EPI_ISL_652789|2020-10-21|Europe', 'hCoV-19/England/MILK-D19FFB/2020|EPI_ISL_799847|2020-12-21|Europe', 'hCoV-19/England/MILK-BAA999/2020|EPI_ISL_681646|2020-11-17|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177.16', 'mutation': (614, 'D', 'G'), '# cluster': 3, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 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'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/EXET-13DD8A/2020|EPI_ISL_724290|2020-12-02|Europe', 'hCoV-19/England/CAMC-A3EC83/2020|EPI_ISL_609797|2020-10-05|Europe', 'hCoV-19/England/CAMB-1B6439/2020|EPI_ISL_576908|2020-09-22|Europe', 'hCoV-19/England/MILK-B3DAC5/2020|EPI_ISL_741385|2020-11-02|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177.18', 'mutation': (583, 'E', 'D'), '# cluster': 4, '% lineage': 0.9991742361684558, '% cluster': 1.0, 'FC': 1.0008254446284186, 'epi_start': 564, 'epi_stop': 595, 'epi_seq': 'QFGRDIADTTDAVRDPQTLEILDITPCSFGGV', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1037971', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 8, '#pubs non-linear': 0, 'sequences': ['hCoV-19/England/EXET-13DD8A/2020|EPI_ISL_724290|2020-12-02|Europe', 'hCoV-19/England/CAMC-A3EC83/2020|EPI_ISL_609797|2020-10-05|Europe', 'hCoV-19/England/CAMB-1B6439/2020|EPI_ISL_576908|2020-09-22|Europe', 'hCoV-19/England/MILK-B3DAC5/2020|EPI_ISL_741385|2020-11-02|Europe'], 'annotations': []}, {'cluster': 'c78', 'lineage': 'B.1.177.18', 'mutation': (614, 'D', 'G'), '# cluster': 4, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs 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23, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1037960'], 'pubs non-linear': [], '#pubs linear': 11, '#pubs non-linear': 0, 'sequences': ['hCoV-19/Denmark/DCGC-3939/2020|EPI_ISL_615850|2020-09-14|Europe'], 'annotations': ['N-terminal domain']}, {'cluster': 'c78', 'lineage': 'B.1.177.24', 'mutation': (614, 'D', 'G'), '# cluster': 1, '% lineage': 1.0, '% cluster': 1.0, 'FC': 0.9999990000010001, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': 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['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-3471/2020|EPI_ISL_640086|2020-09-28|Africa'], 'annotations': []}, {'cluster': 'c93', 'lineage': 'B.1.157', 'mutation': (675, 'Q', 'H'), '# cluster': 1, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 647, 'epi_stop': 695, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAY', '#linear': 21, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/NHLS-UCT-GS-3471/2020|EPI_ISL_640086|2020-09-28|Africa'], 'annotations': []}, {'cluster': 'c93', 'lineage': 'B.1.237', 'mutation': (614, 'D', 'G'), '# cluster': 10, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/Tygerberg_323_CC2/2020|EPI_ISL_660132|2020-10-11|Africa', 'hCoV-19/South_Africa/Tygerberg_318_CC2/2020|EPI_ISL_660127|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_337_CC2/2020|EPI_ISL_660144|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_365_CC2/2020|EPI_ISL_660157|2020-10-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3514/2020|EPI_ISL_640137|2020-10-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3472/2020|EPI_ISL_640136|2020-09-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3461/2020|EPI_ISL_640131|2020-09-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3555/2020|EPI_ISL_640093|2020-10-10|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2025/2020|EPI_ISL_640120|2020-09-15|Africa', 'hCoV-19/South_Africa/KRISP-K004733/2020|EPI_ISL_660261|2020-10-20|Africa'], 'annotations': []}, {'cluster': 'c93', 'lineage': 'B.1.237', 'mutation': (675, 'Q', 'H'), '# cluster': 10, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 647, 'epi_stop': 695, 'epi_seq': 'AGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAY', '#linear': 21, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037915', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 9, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/Tygerberg_323_CC2/2020|EPI_ISL_660132|2020-10-11|Africa', 'hCoV-19/South_Africa/Tygerberg_318_CC2/2020|EPI_ISL_660127|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_337_CC2/2020|EPI_ISL_660144|2020-10-09|Africa', 'hCoV-19/South_Africa/Tygerberg_365_CC2/2020|EPI_ISL_660157|2020-10-16|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3514/2020|EPI_ISL_640137|2020-10-07|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3472/2020|EPI_ISL_640136|2020-09-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3461/2020|EPI_ISL_640131|2020-09-28|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-3555/2020|EPI_ISL_640093|2020-10-10|Africa', 'hCoV-19/South_Africa/NHLS-UCT-GS-2025/2020|EPI_ISL_640120|2020-09-15|Africa', 'hCoV-19/South_Africa/KRISP-K004733/2020|EPI_ISL_660261|2020-10-20|Africa'], 'annotations': []}, {'cluster': 'c97', 'lineage': 'B.1', 'mutation': (18, 'L', 'F'), '# cluster': 5, '% lineage': 0.018541786939246782, '% cluster': 1.0, 'FC': 53.92932590318705, 'epi_start': 1, 'epi_stop': 34, 'epi_seq': 'MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTR', '#linear': 13, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038063', 'http://www.iedb.org/reference/1038085', 'http://www.iedb.org/reference/1038547'], '#pubs linear': 7, '#pubs non-linear': 4, 'sequences': ['hCoV-19/South_Africa/KRISP-K003384/2020|EPI_ISL_602772|2020-09-10|Africa', 'hCoV-19/South_Africa/L00175/2020|EPI_ISL_622961|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K004055/2020|EPI_ISL_635034|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004049/2020|EPI_ISL_635028|2020-10-20|Africa', 'hCoV-19/South_Africa/KRISP-K004326/2020|EPI_ISL_660202|2020-10-25|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c97', 'lineage': 'B.1', 'mutation': (614, 'D', 'G'), '# cluster': 5, '% lineage': 0.9960946785750671, '% cluster': 1.0, 'FC': 1.0039196249004092, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K003384/2020|EPI_ISL_602772|2020-09-10|Africa', 'hCoV-19/South_Africa/L00175/2020|EPI_ISL_622961|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K004055/2020|EPI_ISL_635034|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004049/2020|EPI_ISL_635028|2020-10-20|Africa', 'hCoV-19/South_Africa/KRISP-K004326/2020|EPI_ISL_660202|2020-10-25|Africa'], 'annotations': []}, {'cluster': 'c97', 'lineage': 'B.1', 'mutation': (1251, 'G', 'V'), '# cluster': 5, '% lineage': 0.00010187795021564166, '% cluster': 1.0, 'FC': 9720.255875082152, 'epi_start': 1236, 'epi_stop': 1270, 'epi_seq': 'CMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKL', '#linear': 12, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038514', 'http://www.iedb.org/reference/1037435'], 'pubs non-linear': [], '#pubs linear': 6, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K003384/2020|EPI_ISL_602772|2020-09-10|Africa', 'hCoV-19/South_Africa/L00175/2020|EPI_ISL_622961|2020-07-27|Africa', 'hCoV-19/South_Africa/KRISP-K004055/2020|EPI_ISL_635034|2020-10-19|Africa', 'hCoV-19/South_Africa/KRISP-K004049/2020|EPI_ISL_635028|2020-10-20|Africa', 'hCoV-19/South_Africa/KRISP-K004326/2020|EPI_ISL_660202|2020-10-25|Africa'], 'annotations': ['cytoplasm domain']}, {'cluster': 'c97', 'lineage': 'B.1', 'mutation': (179, 'L', 'F'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.2, 'FC': 200000.00000000003, 'epi_start': 164, 'epi_stop': 194, 'epi_seq': 'NNCTFEYVSQPFLMDLEGKQGNFKNLREFVF', '#linear': 30, '#non-linear': 2, 'pubs linear': ['http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1038060', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1036944'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086'], '#pubs linear': 10, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-K004055/2020|EPI_ISL_635034|2020-10-19|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c99', 'lineage': 'B.1.417', 'mutation': (614, 'D', 'G'), '# cluster': 19, '% lineage': 0.0, '% cluster': 1.0, 'FC': 1000000.0, 'epi_start': 601, 'epi_stop': 652, 'epi_seq': 'GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG', '#linear': 12, '#non-linear': 6, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': ['http://www.iedb.org/reference/1038242', 'http://www.iedb.org/reference/1038245', 'http://www.iedb.org/reference/1038548'], '#pubs linear': 6, '#pubs non-linear': 3, 'sequences': ['hCoV-19/South_Africa/KRISP-K002608/2020|EPI_ISL_535472|2020-08-01|Africa', 'hCoV-19/South_Africa/KRISP-K002613/2020|EPI_ISL_535477|2020-07-28|Africa', 'hCoV-19/South_Africa/KRISP-K004334/2020|EPI_ISL_660210|2020-10-24|Africa', 'hCoV-19/South_Africa/KRISP-K005312/2020|EPI_ISL_678605|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004317/2020|EPI_ISL_660194|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004318/2020|EPI_ISL_660195|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004643/2020|EPI_ISL_660658|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K005310/2020|EPI_ISL_678603|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K003694/2020|EPI_ISL_602875|2020-10-05|Africa', 'hCoV-19/South_Africa/KRISP-K004053/2020|EPI_ISL_635032|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004061/2020|EPI_ISL_635040|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004059/2020|EPI_ISL_635038|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004057/2020|EPI_ISL_635036|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004341/2020|EPI_ISL_660217|2020-10-28|Africa', 'hCoV-19/South_Africa/KRISP-K004613/2020|EPI_ISL_660636|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K004058/2020|EPI_ISL_635037|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004316/2020|EPI_ISL_660193|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K002591/2020|EPI_ISL_535456|2020-07-28|Africa', 'hCoV-19/South_Africa/KRISP-K001321/2020|EPI_ISL_515806|2020-07-18|Africa'], 'annotations': []}, {'cluster': 'c99', 'lineage': 'B.1.417', 'mutation': (939, 'S', 'F'), '# cluster': 15, '% lineage': 0.0, '% cluster': 0.7894736842105263, 'FC': 789473.6842105264, 'epi_start': 906, 'epi_stop': 968, 'epi_seq': 'FNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS', '#linear': 31, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1038006', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037486', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806'], 'pubs non-linear': [], '#pubs linear': 10, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K004334/2020|EPI_ISL_660210|2020-10-24|Africa', 'hCoV-19/South_Africa/KRISP-K005312/2020|EPI_ISL_678605|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004317/2020|EPI_ISL_660194|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004318/2020|EPI_ISL_660195|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004643/2020|EPI_ISL_660658|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K005310/2020|EPI_ISL_678603|2020-10-30|Africa', 'hCoV-19/South_Africa/KRISP-K003694/2020|EPI_ISL_602875|2020-10-05|Africa', 'hCoV-19/South_Africa/KRISP-K004053/2020|EPI_ISL_635032|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004061/2020|EPI_ISL_635040|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004059/2020|EPI_ISL_635038|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004057/2020|EPI_ISL_635036|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004341/2020|EPI_ISL_660217|2020-10-28|Africa', 'hCoV-19/South_Africa/KRISP-K004613/2020|EPI_ISL_660636|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K004058/2020|EPI_ISL_635037|2020-10-18|Africa', 'hCoV-19/South_Africa/KRISP-K004316/2020|EPI_ISL_660193|2020-10-26|Africa'], 'annotations': ['heptapeptide repeat sequence 1']}, {'cluster': 'c99', 'lineage': 'B.1.417', 'mutation': (175, 'F', 'S'), '# cluster': 5, '% lineage': 0.0, '% cluster': 0.2631578947368421, 'FC': 263157.8947368421, 'epi_start': 161, 'epi_stop': 193, 'epi_seq': 'SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFV', '#linear': 34, '#non-linear': 3, 'pubs linear': ['http://www.iedb.org/reference/1037960', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037798', 'http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037393', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892', 'http://www.iedb.org/reference/1037946', 'http://www.iedb.org/reference/1037806', 'http://www.iedb.org/reference/1036944'], 'pubs non-linear': ['http://www.iedb.org/reference/1038086'], '#pubs linear': 13, '#pubs non-linear': 1, 'sequences': ['hCoV-19/South_Africa/KRISP-K005312/2020|EPI_ISL_678605|2020-11-16|Africa', 'hCoV-19/South_Africa/KRISP-K004317/2020|EPI_ISL_660194|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004318/2020|EPI_ISL_660195|2020-10-26|Africa', 'hCoV-19/South_Africa/KRISP-K004643/2020|EPI_ISL_660658|2020-11-04|Africa', 'hCoV-19/South_Africa/KRISP-K005310/2020|EPI_ISL_678603|2020-10-30|Africa'], 'annotations': ['N-terminal domain']}, {'cluster': 'c99', 'lineage': 'B.1.417', 'mutation': (1237, 'M', 'I'), '# cluster': 1, '% lineage': 0.0, '% cluster': 0.05263157894736842, 'FC': 52631.57894736842, 'epi_start': 1202, 'epi_stop': 1255, 'epi_seq': 'ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCK', '#linear': 14, '#non-linear': 0, 'pubs linear': ['http://www.iedb.org/reference/1037809', 'http://www.iedb.org/reference/1036945', 'http://www.iedb.org/reference/1037823', 'http://www.iedb.org/reference/1037940', 'http://www.iedb.org/reference/1037412', 'http://www.iedb.org/reference/1037195', 'http://www.iedb.org/reference/1036892'], 'pubs non-linear': [], '#pubs linear': 7, '#pubs non-linear': 0, 'sequences': ['hCoV-19/South_Africa/KRISP-K005310/2020|EPI_ISL_678603|2020-10-30|Africa'], 'annotations': ['TM domain', 'cytoplasm domain']}] + + cont = itertools.count() + + def html_metadata(k, v): + k = k[0].upper() + k[1:] + + if k == "Mut": + k = "Mutations" + v = ", ".join([f"{x[1]}{x[0]}{x[2]}" for x in v]) + if k == "Fs_flag": + k == "Frameshift" + v = "Has frameshift" if v else "" + k = k.replace("_", " ") + return f"{k}: {v}" + + def html_def_itemlist(items): + + res = "
\n For help and collaboration with other Vuetify developers,\n
please join our online\n Discord Community\n
, or missing
. Bailing hydration and performing ' +\n 'full client-side render.'\n );\n }\n }\n // either not server-rendered, or hydration failed.\n // create an empty node and replace it\n oldVnode = emptyNodeAt(oldVnode);\n }\n\n // replacing existing element\n var oldElm = oldVnode.elm;\n var parentElm = nodeOps.parentNode(oldElm);\n\n // create new node\n createElm(\n vnode,\n insertedVnodeQueue,\n // extremely rare edge case: do not insert if old element is in a\n // leaving transition. Only happens when combining transition +\n // keep-alive + HOCs. (#4590)\n oldElm._leaveCb ? null : parentElm,\n nodeOps.nextSibling(oldElm)\n );\n\n // update parent placeholder node element, recursively\n if (isDef(vnode.parent)) {\n var ancestor = vnode.parent;\n var patchable = isPatchable(vnode);\n while (ancestor) {\n for (var i = 0; i < cbs.destroy.length; ++i) {\n cbs.destroy[i](ancestor);\n }\n ancestor.elm = vnode.elm;\n if (patchable) {\n for (var i$1 = 0; i$1 < cbs.create.length; ++i$1) {\n cbs.create[i$1](emptyNode, ancestor);\n }\n // #6513\n // invoke insert hooks that may have been merged by create hooks.\n // e.g. for directives that uses the \"inserted\" hook.\n var insert = ancestor.data.hook.insert;\n if (insert.merged) {\n // start at index 1 to avoid re-invoking component mounted hook\n for (var i$2 = 1; i$2 < insert.fns.length; i$2++) {\n insert.fns[i$2]();\n }\n }\n } else {\n registerRef(ancestor);\n }\n ancestor = ancestor.parent;\n }\n }\n\n // destroy old node\n if (isDef(parentElm)) {\n removeVnodes([oldVnode], 0, 0);\n } else if (isDef(oldVnode.tag)) {\n invokeDestroyHook(oldVnode);\n }\n }\n }\n\n invokeInsertHook(vnode, insertedVnodeQueue, isInitialPatch);\n return vnode.elm\n }\n}\n\n/* */\n\nvar directives = {\n create: updateDirectives,\n update: updateDirectives,\n destroy: function unbindDirectives (vnode) {\n updateDirectives(vnode, emptyNode);\n }\n};\n\nfunction updateDirectives (oldVnode, vnode) {\n if (oldVnode.data.directives || vnode.data.directives) {\n _update(oldVnode, vnode);\n }\n}\n\nfunction _update (oldVnode, vnode) {\n var isCreate = oldVnode === emptyNode;\n var isDestroy = vnode === emptyNode;\n var oldDirs = normalizeDirectives$1(oldVnode.data.directives, oldVnode.context);\n var newDirs = normalizeDirectives$1(vnode.data.directives, vnode.context);\n\n var dirsWithInsert = [];\n var dirsWithPostpatch = [];\n\n var key, oldDir, dir;\n for (key in newDirs) {\n oldDir = oldDirs[key];\n dir = newDirs[key];\n if (!oldDir) {\n // new directive, bind\n callHook$1(dir, 'bind', vnode, oldVnode);\n if (dir.def && dir.def.inserted) {\n dirsWithInsert.push(dir);\n }\n } else {\n // existing directive, update\n dir.oldValue = oldDir.value;\n dir.oldArg = oldDir.arg;\n callHook$1(dir, 'update', vnode, oldVnode);\n if (dir.def && dir.def.componentUpdated) {\n dirsWithPostpatch.push(dir);\n }\n }\n }\n\n if (dirsWithInsert.length) {\n var callInsert = function () {\n for (var i = 0; i < dirsWithInsert.length; i++) {\n callHook$1(dirsWithInsert[i], 'inserted', vnode, oldVnode);\n }\n };\n if (isCreate) {\n mergeVNodeHook(vnode, 'insert', callInsert);\n } else {\n callInsert();\n }\n }\n\n if (dirsWithPostpatch.length) {\n mergeVNodeHook(vnode, 'postpatch', function () {\n for (var i = 0; i < dirsWithPostpatch.length; i++) {\n callHook$1(dirsWithPostpatch[i], 'componentUpdated', vnode, oldVnode);\n }\n });\n }\n\n if (!isCreate) {\n for (key in oldDirs) {\n if (!newDirs[key]) {\n // no longer present, unbind\n callHook$1(oldDirs[key], 'unbind', oldVnode, oldVnode, isDestroy);\n }\n }\n }\n}\n\nvar emptyModifiers = Object.create(null);\n\nfunction normalizeDirectives$1 (\n dirs,\n vm\n) {\n var res = Object.create(null);\n if (!dirs) {\n // $flow-disable-line\n return res\n }\n var i, dir;\n for (i = 0; i < dirs.length; i++) {\n dir = dirs[i];\n if (!dir.modifiers) {\n // $flow-disable-line\n dir.modifiers = emptyModifiers;\n }\n res[getRawDirName(dir)] = dir;\n dir.def = resolveAsset(vm.$options, 'directives', dir.name, true);\n }\n // $flow-disable-line\n return res\n}\n\nfunction getRawDirName (dir) {\n return dir.rawName || ((dir.name) + \".\" + (Object.keys(dir.modifiers || {}).join('.')))\n}\n\nfunction callHook$1 (dir, hook, vnode, oldVnode, isDestroy) {\n var fn = dir.def && dir.def[hook];\n if (fn) {\n try {\n fn(vnode.elm, dir, vnode, oldVnode, isDestroy);\n } catch (e) {\n handleError(e, vnode.context, (\"directive \" + (dir.name) + \" \" + hook + \" hook\"));\n }\n }\n}\n\nvar baseModules = [\n ref,\n directives\n];\n\n/* */\n\nfunction updateAttrs (oldVnode, vnode) {\n var opts = vnode.componentOptions;\n if (isDef(opts) && opts.Ctor.options.inheritAttrs === false) {\n return\n }\n if (isUndef(oldVnode.data.attrs) && isUndef(vnode.data.attrs)) {\n return\n }\n var key, cur, old;\n var elm = vnode.elm;\n var oldAttrs = oldVnode.data.attrs || {};\n var attrs = vnode.data.attrs || {};\n // clone observed objects, as the user probably wants to mutate it\n if (isDef(attrs.__ob__)) {\n attrs = vnode.data.attrs = extend({}, attrs);\n }\n\n for (key in attrs) {\n cur = attrs[key];\n old = oldAttrs[key];\n if (old !== cur) {\n setAttr(elm, key, cur);\n }\n }\n // #4391: in IE9, setting type can reset value for input[type=radio]\n // #6666: IE/Edge forces progress value down to 1 before setting a max\n /* istanbul ignore if */\n if ((isIE || isEdge) && attrs.value !== oldAttrs.value) {\n setAttr(elm, 'value', attrs.value);\n }\n for (key in oldAttrs) {\n if (isUndef(attrs[key])) {\n if (isXlink(key)) {\n elm.removeAttributeNS(xlinkNS, getXlinkProp(key));\n } else if (!isEnumeratedAttr(key)) {\n elm.removeAttribute(key);\n }\n }\n }\n}\n\nfunction setAttr (el, key, value) {\n if (el.tagName.indexOf('-') > -1) {\n baseSetAttr(el, key, value);\n } else if (isBooleanAttr(key)) {\n // set attribute for blank value\n // e.g. \n if (isFalsyAttrValue(value)) {\n el.removeAttribute(key);\n } else {\n // technically allowfullscreen is a boolean attribute for