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process_conll.py
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process_conll.py
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"""Script to get fresh gold parses from UD_Coptic repo"""
import io, sys, os, re, shutil
from paths import ud_dir
from depedit import DepEdit
from collections import defaultdict
script_dir = os.path.dirname(os.path.realpath(__file__))
PY3 = sys.version_info[0] == 3
treebank_docs = [
"a22.YA421-428",
"AP.023.isaac-cells.07",
"AP.024.isaac-cells.07",
"AP.025.isaac-cells.12",
"AP.026.cassian.07",
"1Cor_01",
"1Cor_02",
"1Cor_03",
"1Cor_04",
"1Cor_05",
"1Cor_06",
"on_vigilance",
"on_lack_of_food",
"martyrdom.victor.01",
"XL93-94",
"YA518-520",
"AP.027.pistamon.01",
"AP.028.serapion.02",
"AP.029.syncletica.05",
"AP.030.hyperechios.06",
"AP.031.philagrios.01",
"AP.032.benjamin.05",
"Mark_01",
"Mark_02",
"Mark_03",
"Mark_04",
"Mark_05",
"Mark_06",
"Mark_07",
"Mark_08",
"Mark_09",
"to_thieving_nuns",
"exhortations",
"life.cyrus.01",
"XH204-216",
"GF31-32",
"AP.001.n135.mother",
"AP.002.n136.account",
"AP.003.n138.blame",
"AP.004.poemen.65",
"AP.005.unid.senses",
"AP.006.n196.worms",
"AP.018.n372.anger",
"AP.019.n161.presbyter",
"AP.114.theophilus.02",
"AP.116.pistus.01",
"AP.117.Sisoes.09",
"AP.118.Sisoes.11",
"AP.119.Sisoes.16",
"AP.120.sisoes.13",
"AP.121.syncletica.26",
"AP.122.n667.humility",
"AP.123.syncletica.11",
"AP.124.orsisius.01",
"AP.125.orsisius.01",
"AP.126.n132.pigs",
"AP.127.n298.demon",
"AP.128.n299.arrogance",
"AP.129.n331.humility",
"AP.130.n300.glory",
"AP.131.n301.joshua",
"AP.132.n302.armor",
"AP.133.n303.words",
"AP.134.n304.humility",
"AP.135.n305.blame",
"AP.136.unid.humility",
"AP.137.p.263",
"AP.138.unid.soil",
"AP.139.n306.dog",
"to_aphthonia",
"life.onnophrius.01",
"psephrem.letter",
"psflavianus.encomium.01",
"dormition.john.mercad",
"mercy_judgment",
"Ruth_01",
"Ruth_02",
"Ruth_03",
"Ruth_04",
"proclus.13.easter"
]
def sgml2conll(sgml, doc, corpus):
def lang2iso(lang):
if lang == "Hebrew":
return "he"
elif lang == "Greek":
return "grc"
elif lang == "Latin":
return "la"
elif lang == "Egyptian":
return "egy"
elif lang == "Akkadian":
return "akk"
elif lang == "Aramaic":
return "arc"
elif lang == "Persian":
return "peo"
else:
raise IOError("Uknnown language code: " + lang + "\n")
def get(attr, line):
return re.search(" " + attr + '="([^"]*)"', line).group(1)
def make_sent(sent, sent_num, text, trans):
sid = "# sent_id = " + corpus + "-" + doc + "_" + make_sid(sent_num)
sid = sid.replace(".", "_")
s_text = "# text = " + " ".join(text)
trans = trans.replace("'", "'")
sent = [sid, s_text, "# text_en = " + trans] + sent + [""]
return sent
"""Take a TT SGML file including parses and create Scriptorium-style CoNLLU"""
# See if we have sentence spans in treebank
get_gold_parses()
norms = sgml.count("</norm>")
trans = sgml.count("</translation>")
do_trans = False
break_indices = set([])
if os.path.exists(script_dir + "gold_parses" + os.sep + doc + ".conll10"):
conll10 = io.open(script_dir + "gold_parses" + os.sep + doc + ".conll10", encoding="utf8").read()
sents = conll10.strip().count("\n\n") + 1
toks = len(re.findall(r"^[0-9]+\t", conll10, flags=re.MULTILINE))
if trans == sents:
do_trans = True
else:
debug_trans = "\n".join([line for line in sgml.split("\n") if "translation translation=" in line])
debug_sents = "\n".join([re.sub(r"[0-9]+\t([^\t]+)[^ ]+",r"\1",re.sub(r"\n"," ",s)) for s in conll10.strip().split("\n\n")])
if toks == norms: # Counts match, can use sentence splits from treebank
counter = 1
sents = conll10.strip().split("\n\n")
for sent in sents:
counter += len(re.findall(r"^[0-9]+\t", sent, flags=re.MULTILINE))
break_indices.add(counter)
else:
sys.stderr.write("WARN: no gold parse for document " + doc + "\n")
groups = {}
entity_starts = defaultdict(list)
entity_ends = defaultdict(list)
entity_single = {}
entity_stack = []
norms = []
langs = []
lang = ""
counter = 0
start = 1
ent_start = 1
lines = sgml.split("\n")
# First pass - get bound groups and entities
for l, line in enumerate(lines):
if "ϩⲁⲣⲙⲁ" in line:
a = 3
if " norm_group=" in line:
start = counter + 1
if "</norm_group>" in line:
end = counter
groups[start] = (end, "".join(norms))
norms = []
if ' entity="' in line:
ent_type = get("entity", line)
ident = ""
if " identity=" in line:
ident = get("identity",line).replace(" ","_").replace("(","%28").replace(")","%29")
entity_starts[counter + 1].append((ent_type,ident))
entity_stack.append((ent_type, counter + 1, ident))
if " lang=" in line:
lang = get("lang",line)
if "</norm>" in line:
langs.append(lang)
lang = ""
if "</entity>" in line:
ent_type, ent_start, ident = entity_stack.pop()
if ent_start < counter:
entity_ends[counter].append((ent_type,ident))
else:
entity_single[counter] = (ent_type,ident)
# Now remove a single occurrence of this entity type from entity_starts
prev_len = len(entity_starts[counter])
entity_starts[counter].remove((ent_type,ident))
assert len(entity_starts[counter]) == prev_len - 1
if " norm=" in line:
norm = get("norm", line)
norms.append(norm)
counter += 1
# output = ["# newdoc id = " + corpus + ":" + conllize_name(doc)]
output = ["# newdoc id = " + corpus + ":" + doc]
sent_tag = "translation" if "</translation>" in sgml else "verse_n"
tok = xml_id = head = sent_num = 1
offset = 0
trans = ""
orig = word = pos = lemma = func = ""
sent = []
morphs = []
text = []
for line in lines:
if ' norm="' in line:
word = get("norm", line)
if ' orig="' in line:
orig = get("orig", line)
if ' pos="' in line:
pos = get("pos", line)
if " lemma=" in line:
lemma = get("lemma", line)
if " morph=" in line:
morphs.append(get("morph", line))
if " func=" in line:
func = get("func", line)
if func == "root":
head = 0
if " head=" in line:
head = int(get("head", line).replace("#", "").replace("u", "")) - offset
elif " func=" in line: # item has function but not head -> is a root
head = 0
if " xml:id=" in line and ' norm=' in line: # Avoid other xml:id, e.g. on <pb> element
xml_id = int(get("xml:id", line).replace("u", ""))
if "</norm>" in line:
misc = []
if len(morphs) > 0:
misc.append("Morphs=" + "-".join(morphs))
if orig != word:
misc.append("Orig=" + orig)
ent_list = []
if xml_id in entity_single:
ent_type, ident = entity_single[xml_id]
ent_string = ent_type if len(ident) == 0 else "-".join([ent_type,ident])
ent_list.append("(" + ent_string + ")")
if xml_id in entity_ends:
for (ent_type, ident) in entity_ends[xml_id]:
ent_string = ent_type if len(ident) == 0 else "-".join([ent_type, ident])
ent_list.append(ent_string + ")")
if xml_id in entity_starts:
for (ent_type,ident) in entity_starts[xml_id]:
ent_string = ent_type if len(ident) == 0 else "-".join([ent_type, ident])
ent_list.append("(" + ent_string)
if len(ent_list) > 0:
misc.append("Entity=" + "".join(ent_list))
if langs[tok-1] != "":
misc.append("OrigLang=" + lang2iso(langs[tok-1]))
misc = "|".join(sorted(misc))
if misc == "":
misc = "_"
if xml_id in groups:
end, supertok = groups[xml_id]
if end > xml_id:
sent.append("\t".join([str(xml_id - offset) + "-" + str(end - offset), supertok] + ["_"] * 8))
text.append(supertok)
upos = make_upos(pos, func)
cols = [str(tok - offset), word, lemma, upos, pos, "_", str(head), func, "_", misc]
sent.append("\t".join(cols))
tok += 1
morphs = []
if "<" + sent_tag in line:
if " translation=" in line:
trans = get("translation", line)
else:
trans = "..."
if len(break_indices) > 0:
if tok in break_indices: # New sentence
if trans == "" or not do_trans:
trans = "..."
if len(sent) > 0:
sent = make_sent(sent, sent_num, text, trans)
output += sent
offset = xml_id
sent = []
text = []
sent_num += 1
if len(break_indices) > 1:
break_indices.remove(tok)
elif "</" + sent_tag in line: # No treebank sentence spans, use translation spans
sent = make_sent(sent, sent_num, text, trans)
output += sent
offset = xml_id
sent = []
text = []
sent_num += 1
conll = "\n".join(output) + "\n\n"
d = DepEdit(
io.open("C:\\Uni\\Coptic\\git\\corpora\\treebank-dev\\merge_scripts\\add_ud_morph.ini", encoding="utf8")
.read()
.split("\n")
)
conllu = d.run_depedit(conll.split("\n"))
return conllu.strip() + "\n\n"
def adjust_name(doc):
doc = doc.replace("1Corinthians", "1Cor").replace("MONB_", "")
doc = re.sub("^(XH|YA|XL|GF)_", r"\1", doc)
doc = re.sub("([A-Z]{2}[0-9]{1,3})_", r"\1-", doc)
if "a22" not in doc:
doc = doc.replace("YA421", "a22.YA421")
return doc
def conllize_name(doc):
doc = doc.replace("1Cor", "1Corinthians")
if doc[:2] in ["XH", "YA", "XL", "GF"]:
doc = "MONB_" + doc
doc = re.sub("_(XH|YA|XL|GF)", r"_\1_", doc)
doc = doc.replace("a22.YA", "YA")
return doc
def get_gold_parses(gold_dir=None, treebank_dir=None):
if treebank_dir is None:
treebank_dir = ud_dir
if not treebank_dir.endswith(os.sep):
treebank_dir += os.sep
if gold_dir is None:
gold_dir = script_dir + "gold_parses" + os.sep
if not os.path.exists(gold_dir):
os.mkdir(gold_dir)
else:
shutil.rmtree(gold_dir)
os.mkdir(gold_dir)
files = ["cop_scriptorium-ud-train.conllu", "cop_scriptorium-ud-dev.conllu", "cop_scriptorium-ud-test.conllu"]
files = [treebank_dir + f for f in files]
for file_ in files:
lines = io.open(file_, encoding="utf8").read().replace("\r", "").strip().split("\n")
outhandle = None
for line in lines:
if "newdoc" in line:
docparts = line.strip().split(":")
docname = docparts[1]
docname = adjust_name(docname)
outhandle = io.open(gold_dir + docname + ".conll10", "w", encoding="utf8", newline="\n")
elif "\t" in line:
fields = line.split("\t")
if "-" in fields[0]: # Skip supertokens
continue
fields[5] = fields[1] # Duplicate tok into morph to create norm annotation
if PY3:
outhandle.write("\t".join(fields) + "\n")
else:
outhandle.write(unicode(("\t".join(fields) + "\n")))
elif len(line) == 0:
if PY3:
outhandle.write("\n")
else:
outhandle.write(unicode("\n"))
def make_upos(cs_tag, func):
out_tag = ""
if cs_tag == "AAOR":
out_tag = "AUX"
if cs_tag == "ACAUS":
out_tag = "VERB"
if cs_tag == "ACOND":
out_tag = "SCONJ"
if cs_tag == "ACONJ":
out_tag = "AUX"
if cs_tag == "ADV":
out_tag = "ADV"
if cs_tag == "AFUTCONJ":
out_tag = "AUX"
if cs_tag == "AJUS":
out_tag = "AUX"
if cs_tag == "ALIM":
out_tag = "SCONJ"
if cs_tag == "ANEGAOR":
out_tag = "AUX"
if cs_tag == "ANEGJUS":
out_tag = "AUX"
if cs_tag == "ANEGOPT":
out_tag = "AUX"
if cs_tag == "ANEGPST":
out_tag = "AUX"
if cs_tag == "ANY":
out_tag = "AUX"
if cs_tag == "AOPT":
out_tag = "AUX"
if cs_tag == "APREC":
out_tag = "SCONJ"
if cs_tag == "APST":
out_tag = "AUX"
if cs_tag == "ART":
out_tag = "DET"
if cs_tag == "CCIRC":
out_tag = "SCONJ"
if cs_tag == "CFOC":
out_tag = "PART"
if cs_tag == "CONJ":
if func == "mark":
out_tag="SCONJ"
else:
out_tag = "CCONJ"
if cs_tag == "COP":
out_tag = "PRON"
if cs_tag == "CPRET":
out_tag = "AUX"
if cs_tag == "CREL":
out_tag = "SCONJ"
if cs_tag == "EXIST":
out_tag = "VERB"
if cs_tag == "FM":
out_tag = "X"
if cs_tag == "FUT":
out_tag = "AUX"
if cs_tag == "IMOD":
out_tag = "ADV"
if cs_tag == "N":
if func == "amod":
out_tag = "ADJ"
else:
out_tag = "NOUN"
if cs_tag == "NEG":
out_tag = "ADV"
if cs_tag == "NPROP":
out_tag = "PROPN"
if cs_tag == "NUM":
out_tag = "NUM"
if cs_tag == "PDEM":
out_tag = "DET"
if cs_tag == "PINT":
out_tag = "PRON"
if cs_tag == "PPERI":
out_tag = "PRON"
if cs_tag == "PPERO":
out_tag = "PRON"
if cs_tag == "PPERS":
out_tag = "PRON"
if cs_tag == "PPOS":
out_tag = "DET"
if cs_tag == "PREP":
if func == "mark":
out_tag = "PART"
else:
out_tag = "ADP"
if cs_tag == "PTC":
out_tag = "PART"
if cs_tag == "PUNCT":
out_tag = "PUNCT"
if cs_tag == "UNKNOWN":
out_tag = "X"
if cs_tag == "FW":
out_tag = "X"
if cs_tag == "V":
out_tag = "VERB"
if cs_tag == "VBD":
out_tag = "VERB"
if cs_tag == "VIMP":
out_tag = "VERB"
if cs_tag == "VSTAT":
out_tag = "VERB"
if cs_tag.endswith("_PPERS"):
out_tag = "PRON"
if cs_tag.endswith("_PPERO"):
out_tag = "PRON"
if cs_tag == "_": # supertoken
out_tag = "_"
if func == "aux":
out_tag = "AUX"
if cs_tag == "PINT" and func == "advmod":
out_tag = "ADV"
return out_tag
def make_sid(sent_num):
sid = str(sent_num)
if len(sid) == 1:
sid = "s000" + sid
elif len(sid) == 2:
sid = "s00" + sid
elif len(sid) == 3:
sid = "s0" + sid
else:
sid = "s" + sid
return sid
if __name__ == "__main__":
# get_gold_parses()
path = "C:\\Uni\\Coptic\\git\\corpora\\pub_corpora\\AP\\apophthegmata.patrum_TT\\AP.007.n139.laughing.tt"
sgml = io.open(path, encoding="utf8",).read()
conll = sgml2conll(sgml, "AP.007.n139.laughing", "apophthegmata.patrum")
path = "C:\\Uni\\Coptic\\git\\corpora\\pub_corpora\\AP\\apophthegmata.patrum_TT\\AP.025.isaac-cells.12.tt"
sgml = io.open(path, encoding="utf8",).read()
# conll = sgml2conll(sgml, 'AP.025.isaac-cells.12', 'apophthegmata.patrum')
print(conll)