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File "h5py/h5t.pyx", line 435, in h5py.h5t.TypeID.dtype.__get__
File "h5py/h5t.pyx", line 951, in h5py.h5t.TypeIntegerID.py_dtype
TypeError: data type'<i15' not understood
I am out of my depth here but: 8 * 15 = 120 and 8 * 14 = 112, so it's like the python library is considering this field as 8 lots of 14(15)-bit integers instead of the other way around.
Or maybe it's just that there's no appropriate numpy type for this sort of variable length integer?
Thanks very much for your time.
The text was updated successfully, but these errors were encountered:
For one reason or another, I want to parse the hal file output from cactus in python.
Using h5py, like:
gives:
Using h5dump to look at the header:
Same as above, but look at another genome (
Pfa
):and:
I am out of my depth here but:
8 * 15 = 120
and8 * 14 = 112
, so it's like the python library is considering this field as 8 lots of 14(15)-bit integers instead of the other way around.Or maybe it's just that there's no appropriate numpy type for this sort of variable length integer?
Thanks very much for your time.
The text was updated successfully, but these errors were encountered: