From 8ac2d5da1817c4da832fe9e59d7f7a4932cc6dec Mon Sep 17 00:00:00 2001
From: nlebovits <nissim.lebovits@vanderbilt.edu>
Date: Tue, 24 Sep 2024 20:54:54 -0400
Subject: [PATCH] add radon to backend workflow

---
 .github/workflows/pr_checks_backend.yml |  41 ++-
 .pre-commit-config.yaml                 |  13 +-
 data/src/Pipfile                        |   1 +
 data/src/Pipfile.lock                   | 364 +++++++++++++-----------
 4 files changed, 243 insertions(+), 176 deletions(-)

diff --git a/.github/workflows/pr_checks_backend.yml b/.github/workflows/pr_checks_backend.yml
index 832e28a2..731df82a 100644
--- a/.github/workflows/pr_checks_backend.yml
+++ b/.github/workflows/pr_checks_backend.yml
@@ -8,7 +8,7 @@ on:
       - 'data/**'
       - 'Dockerfile-pg'
       - 'init_pg.sql'
-      - 'docker compose.yml'
+      - 'docker-compose.yml'
   workflow_dispatch:
 
 jobs:
@@ -29,11 +29,43 @@ jobs:
         with:
           python-version: '3.11.4'
 
+      - name: Install Radon
+        run: pip install radon
+
+  run-radon:
+    runs-on: ubuntu-latest
+    needs: setup
+    continue-on-error: true # Ensure workflow continues on error
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Run Radon Maintainability Index (MI) and Halstead Checks
+        run: |
+          # Run Maintainability Index analysis and capture bad grades (below B)
+          bad_grades=$(radon mi -s data/ | grep -E " - [CDEF] \(" || true)
+
+          if [[ ! -z "$bad_grades" ]]; then
+            echo "Bad MI grades found:"
+            echo "$bad_grades"
+          else
+            echo "Radon MI checks passed successfully"
+          fi
+
+          # Run Halstead complexity analysis and check for effort > 2000
+          high_effort=$(radon hal data/ -s | awk '/effort/ { if ($3 > 2000) print $0 }')
+
+          if [[ ! -z "$high_effort" ]]; then
+            echo "High Halstead effort found:"
+            echo "$high_effort"
+          else
+            echo "Halstead checks passed successfully"
+          fi
+
   run-formatter:
     runs-on: ubuntu-latest
     needs: setup
     continue-on-error: true
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
@@ -47,7 +79,6 @@ jobs:
     runs-on: ubuntu-latest
     needs: setup
     continue-on-error: true
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
@@ -60,7 +91,6 @@ jobs:
   build-project:
     runs-on: ubuntu-latest
     needs: setup
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
@@ -73,7 +103,6 @@ jobs:
   run-services:
     runs-on: ubuntu-latest
     needs: build-project
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
@@ -86,7 +115,6 @@ jobs:
   check-build-status:
     runs-on: ubuntu-latest
     needs: run-services
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
@@ -103,7 +131,6 @@ jobs:
   check-lint-format-status:
     runs-on: ubuntu-latest
     needs: [run-formatter, run-linter]
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 99853e5d..0fbd3b07 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -23,10 +23,21 @@ repos:
       # Dependency checks for Python
       - id: check-python-dependencies
         name: Check Python dependencies
-        entry: bash -c 'cd data/src && pipenv check --bare --quiet || (echo "Python dependencies check failed" && exit 1)'
+        entry: |
+          bash -c 'cd data/src && pipenv check --bare --quiet || (echo "Python dependencies check failed" && exit 1)'
         language: system
         files: ^data/src/Pipfile$
 
+      # Radon MI and Halstead checks
+      - id: radon-check
+        name: Radon Maintainability and Halstead Checks
+        entry: |
+          bash -c 'radon mi -s {} | grep -E " - [CDEF] \(" && echo "Radon MI grade below B detected!" && exit 1 || echo "All MI grades are B or above."
+          radon hal {} -s | awk "/effort/ { if (\$3 > 2000) print FILENAME \": High Halstead effort:\" \$3 }"'
+        language: system
+        files: \.py$
+        exclude: ^data/src/awkde/
+
   # JavaScript hooks
   - repo: local
     hooks:
diff --git a/data/src/Pipfile b/data/src/Pipfile
index be8a79a7..1c52a002 100644
--- a/data/src/Pipfile
+++ b/data/src/Pipfile
@@ -31,6 +31,7 @@ libpysal = "*"
 jenkspy = "*"
 pyarrow = "*"
 tqdm = "*"
+radon = "*"
 
 [dev-packages]
 
diff --git a/data/src/Pipfile.lock b/data/src/Pipfile.lock
index 3498c849..60acccdc 100644
--- a/data/src/Pipfile.lock
+++ b/data/src/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "a62a0481d543897b25642d05de229c01bf6ad1cd2bfd9636515fb47d7f67791a"
+            "sha256": "500c218166d9e877f33de2c8d7bdf13d276295f3726e592fe4945860b409c3fc"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -42,11 +42,11 @@
         },
         "anyio": {
             "hashes": [
-                "sha256:c5a275fe5ca0afd788001f58fca1e69e29ce706d746e317d660e21f70c530ef9",
-                "sha256:fdeb095b7cc5a5563175eedd926ec4ae55413bb4be5770c424af0ba46ccb4a78"
+                "sha256:137b4559cbb034c477165047febb6ff83f390fc3b20bf181c1fc0a728cb8beeb",
+                "sha256:c7d2e9d63e31599eeb636c8c5c03a7e108d73b345f064f1c19fdc87b79036a9a"
             ],
-            "markers": "python_version >= '3.8'",
-            "version": "==4.5.0"
+            "markers": "python_version >= '3.9'",
+            "version": "==4.6.0"
         },
         "argon2-cffi": {
             "hashes": [
@@ -177,19 +177,19 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:3fbf1d5b749c92ed43aa190650979dff9f83790a42522e1e9eefa54c8e44bc4b",
-                "sha256:ecba4362f82e23ef775c72b3e6fdef3ef68443629b79e88886d5088302ffc050"
+                "sha256:b04087afd3570ba540fd293823c77270ec675672af23da9396bd5988a3f8128b",
+                "sha256:c31db992655db233d98762612690cfe60723c9e1503b5709aad92c1c564877bb"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.35.23"
+            "version": "==1.35.26"
         },
         "botocore": {
             "hashes": [
-                "sha256:25b17a9ccba6ad32bb5bf7ba4f52656aa03c1cb29f6b4e438050ee4ad1967a3b",
-                "sha256:cab9ec4e0367b9f33f0bc02c5a29f587b0119ecffd6d125bacee085dcbc8817d"
+                "sha256:0b9dee5e4a3314e251e103585837506b17fcc7485c3c8adb61a9a913f46da1e7",
+                "sha256:19efc3a22c9df77960712b4e203f912486f8bcd3794bff0fd7b2a0f5f1d5712d"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.35.23"
+            "version": "==1.35.26"
         },
         "cachecontrol": {
             "hashes": [
@@ -412,7 +412,7 @@
                 "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44",
                 "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6'",
+            "markers": "python_version >= '3.5'",
             "version": "==0.4.6"
         },
         "comm": {
@@ -562,19 +562,19 @@
         },
         "dbt-common": {
             "hashes": [
-                "sha256:c17d4b26a7c5f64fe526735530ce9cee5726831feadbb9dc2ea3711eb90399e1",
-                "sha256:e4a0acf86258edfcf8d744bf3e47d4354108f0b1d8beeaca4d2d277d71d9f9e7"
+                "sha256:06e6fe9c6f7e13a6f1b513f98f7b1d093f1fb9c02cdbebb3b8904ec6746cc8cf",
+                "sha256:cfd9f46e9de4f9c2c95ec70210d1be53ac41e279038d18a7928cbbfd3f9b67af"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.9.0"
+            "version": "==1.10.0"
         },
         "dbt-core": {
             "hashes": [
-                "sha256:a0d7187ff69615613f091b48909b3ab719def643e7ccb74670f76dd482b4933c",
-                "sha256:a155573745b62c892950b20fb8c4947844fa32ccced89d1cea4f5c81e11438b9"
+                "sha256:0786999515f6eb704a0b2337f7d1846fee54eaf74add71e7a1c5f83778fc224f",
+                "sha256:3dc6a5c994cb58a2448e092bf80c071ae2bfa8e3ecdde8fa4bcd45b78c41695d"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.8.6"
+            "version": "==1.8.7"
         },
         "dbt-extractor": {
             "hashes": [
@@ -608,31 +608,31 @@
         },
         "debugpy": {
             "hashes": [
-                "sha256:0a1029a2869d01cb777216af8c53cda0476875ef02a2b6ff8b2f2c9a4b04176c",
-                "sha256:1cd04a73eb2769eb0bfe43f5bfde1215c5923d6924b9b90f94d15f207a402226",
-                "sha256:28ced650c974aaf179231668a293ecd5c63c0a671ae6d56b8795ecc5d2f48d3c",
-                "sha256:345d6a0206e81eb68b1493ce2fbffd57c3088e2ce4b46592077a943d2b968ca3",
-                "sha256:3df6692351172a42af7558daa5019651f898fc67450bf091335aa8a18fbf6f3a",
-                "sha256:4413b7a3ede757dc33a273a17d685ea2b0c09dbd312cc03f5534a0fd4d40750a",
-                "sha256:4fbb3b39ae1aa3e5ad578f37a48a7a303dad9a3d018d369bc9ec629c1cfa7408",
-                "sha256:55919dce65b471eff25901acf82d328bbd5b833526b6c1364bd5133754777a44",
-                "sha256:5b5c770977c8ec6c40c60d6f58cacc7f7fe5a45960363d6974ddb9b62dbee156",
-                "sha256:606bccba19f7188b6ea9579c8a4f5a5364ecd0bf5a0659c8a5d0e10dcee3032a",
-                "sha256:7b0fe36ed9d26cb6836b0a51453653f8f2e347ba7348f2bbfe76bfeb670bfb1c",
-                "sha256:7e4d594367d6407a120b76bdaa03886e9eb652c05ba7f87e37418426ad2079f7",
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-                "sha256:a697beca97dad3780b89a7fb525d5e79f33821a8bc0c06faf1f1289e549743cf",
-                "sha256:ad84b7cde7fd96cf6eea34ff6c4a1b7887e0fe2ea46e099e53234856f9d99a34",
-                "sha256:b2112cfeb34b4507399d298fe7023a16656fc553ed5246536060ca7bd0e668d0",
-                "sha256:b78c1250441ce893cb5035dd6f5fc12db968cc07f91cc06996b2087f7cefdd8e",
-                "sha256:c0a65b00b7cdd2ee0c2cf4c7335fef31e15f1b7056c7fdbce9e90193e1a8c8cb",
-                "sha256:c9f7c15ea1da18d2fcc2709e9f3d6de98b69a5b0fff1807fb80bc55f906691f7",
-                "sha256:db9fb642938a7a609a6c865c32ecd0d795d56c1aaa7a7a5722d77855d5e77f2b",
-                "sha256:dd3811bd63632bb25eda6bd73bea8e0521794cda02be41fa3160eb26fc29e7ed",
-                "sha256:e84c276489e141ed0b93b0af648eef891546143d6a48f610945416453a8ad406"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==1.8.5"
+                "sha256:0a85707c6a84b0c5b3db92a2df685b5230dd8fb8c108298ba4f11dba157a615a",
+                "sha256:22140bc02c66cda6053b6eb56dfe01bbe22a4447846581ba1dd6df2c9f97982d",
+                "sha256:30f467c5345d9dfdcc0afdb10e018e47f092e383447500f125b4e013236bf14b",
+                "sha256:3358aa619a073b620cd0d51d8a6176590af24abcc3fe2e479929a154bf591b51",
+                "sha256:43996632bee7435583952155c06881074b9a742a86cee74e701d87ca532fe833",
+                "sha256:538c6cdcdcdad310bbefd96d7850be1cd46e703079cc9e67d42a9ca776cdc8a8",
+                "sha256:567419081ff67da766c898ccf21e79f1adad0e321381b0dfc7a9c8f7a9347972",
+                "sha256:5d73d8c52614432f4215d0fe79a7e595d0dd162b5c15233762565be2f014803b",
+                "sha256:67479a94cf5fd2c2d88f9615e087fcb4fec169ec780464a3f2ba4a9a2bb79955",
+                "sha256:9fb8653f6cbf1dd0a305ac1aa66ec246002145074ea57933978346ea5afdf70b",
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+                "sha256:c931a9371a86784cee25dec8d65bc2dc7a21f3f1552e3833d9ef8f919d22280a",
+                "sha256:c9834dfd701a1f6bf0f7f0b8b1573970ae99ebbeee68314116e0ccc5c78eea3c",
+                "sha256:cdaf0b9691879da2d13fa39b61c01887c34558d1ff6e5c30e2eb698f5384cd43",
+                "sha256:db891b141fc6ee4b5fc6d1cc8035ec329cabc64bdd2ae672b4550c87d4ecb128",
+                "sha256:df5dc9eb4ca050273b8e374a4cd967c43be1327eeb42bfe2f58b3cdfe7c68dcb",
+                "sha256:e3a82da039cfe717b6fb1886cbbe5c4a3f15d7df4765af857f4307585121c2dd",
+                "sha256:e3e182cd98eac20ee23a00653503315085b29ab44ed66269482349d307b08df9",
+                "sha256:e4ce0570aa4aca87137890d23b86faeadf184924ad892d20c54237bcaab75d8f",
+                "sha256:f1e60bd06bb3cc5c0e957df748d1fab501e01416c43a7bdc756d2a992ea1b881",
+                "sha256:f7158252803d0752ed5398d291dee4c553bb12d14547c0e1843ab74ee9c31123"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==1.8.6"
         },
         "decorator": {
             "hashes": [
@@ -721,51 +721,57 @@
         },
         "fonttools": {
             "hashes": [
-                "sha256:02569e9a810f9d11f4ae82c391ebc6fb5730d95a0657d24d754ed7763fb2d122",
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-                "sha256:e54f1bba2f655924c1138bbc7fa91abd61f45c68bd65ab5ed985942712864bbb",
-                "sha256:e5b708073ea3d684235648786f5f6153a48dc8762cdfe5563c57e80787c29fbb",
-                "sha256:e8bf06b94694251861ba7fdeea15c8ec0967f84c3d4143ae9daf42bbc7717fe3",
-                "sha256:f08df60fbd8d289152079a65da4e66a447efc1d5d5a4d3f299cdd39e3b2e4a7d",
-                "sha256:f1f8758a2ad110bd6432203a344269f445a2907dc24ef6bccfd0ac4e14e0d71d",
-                "sha256:f677ce218976496a587ab17140da141557beb91d2a5c1a14212c994093f2eae2"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==4.53.1"
+                "sha256:07e005dc454eee1cc60105d6a29593459a06321c21897f769a281ff2d08939f6",
+                "sha256:0a911591200114969befa7f2cb74ac148bce5a91df5645443371aba6d222e263",
+                "sha256:0d1d353ef198c422515a3e974a1e8d5b304cd54a4c2eebcae708e37cd9eeffb1",
+                "sha256:0e88e3018ac809b9662615072dcd6b84dca4c2d991c6d66e1970a112503bba7e",
+                "sha256:1d152d1be65652fc65e695e5619e0aa0982295a95a9b29b52b85775243c06556",
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+                "sha256:db32b5348615a04b82240cc67983cb315309e88d444a288934ee6ceaebcad6cc",
+                "sha256:dcc62f31eae24de7f8dce72134c8651c58000d3b1868e01392baea7c32c247de",
+                "sha256:dfc59d69fc48664bc693842bd57acfdd490acafda1ab52c7836e3fc75c90a111",
+                "sha256:e347b3bfcf985a05e8c0b7d462ba6f15b1ee1c909e2dcad795e49e91b152c383",
+                "sha256:e4d333e558953648ca09d64f13e6d8f0523fa705f51cae3f03b5983489958c70",
+                "sha256:ed10eac5830befbdd0c32f83e8aa6288361597550ba669b04c48f0f9a2c843c6",
+                "sha256:efc0f674aa41b92da8c49e0346318c6075d734994c3c4e4430b1c3f853e498e4",
+                "sha256:f1695e76146579f8c06c1509c7ce4dfe0706f49c6831a817ac04eebb2fd02011",
+                "sha256:f1d4aeb8891338e60d1ab6127af1fe45def5259def8094b9c7e34690c8858803",
+                "sha256:f406b22b7c9a9b4f8aa9d2ab13d6ae0ac3e85c9a809bd590ad53fed2bf70dc79",
+                "sha256:f6ff3b14f2df4c41660a7dec01045a045653998784bf8cfcb5a525bdffffbc8f"
             ],
             "markers": "python_version < '3.13' and platform_machine == 'aarch64' or (platform_machine == 'ppc64le' or (platform_machine == 'x86_64' or (platform_machine == 'amd64' or (platform_machine == 'AMD64' or (platform_machine == 'win32' or platform_machine == 'WIN32')))))",
-            "version": "==3.1.0"
+            "version": "==3.1.1"
         },
         "h11": {
             "hashes": [
@@ -1276,11 +1289,11 @@
         },
         "keyring": {
             "hashes": [
-                "sha256:a2a630d5c9bef5d3f0968d15ef4e42b894a83e17494edcb67b154c36491c9920",
-                "sha256:ae8263fd9264c94f91ad82d098f8a5bb1b7fa71ce0a72388dc4fc0be3f6a034e"
+                "sha256:5426f817cf7f6f007ba5ec722b1bcad95a75b27d780343772ad76b17cb47b0bf",
+                "sha256:b07ebc55f3e8ed86ac81dd31ef14e81ace9dd9c3d4b5d77a6e9a2016d0d71a1b"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==25.4.0"
+            "version": "==25.4.1"
         },
         "kiwisolver": {
             "hashes": [
@@ -1432,6 +1445,13 @@
             ],
             "version": "==1.5.3"
         },
+        "mando": {
+            "hashes": [
+                "sha256:18baa999b4b613faefb00eac4efadcf14f510b59b924b66e08289aa1de8c3500",
+                "sha256:26ef1d70928b6057ee3ca12583d73c63e05c49de8972d620c278a7b206581a8a"
+            ],
+            "version": "==0.7.1"
+        },
         "mapbox": {
             "hashes": [
                 "sha256:13c0774d8e4a4de07c224db00f04f6da21a40c1df7febda1791444d95c3d3c2b",
@@ -1442,12 +1462,12 @@
         },
         "mapclassify": {
             "hashes": [
-                "sha256:b53a5f1d0d43342a333420aa5946c76ea1c3f97f38857f39b5e9f99c35272a3f",
-                "sha256:fa99b107aeead9862607af7ff9bafaa15ee8e485d432be3140f3fd3b878b9451"
+                "sha256:306f4cb99ad1ea166b3efd7180c0a199d240bd801de7937327973d829673bc82",
+                "sha256:c79ba6ba9e51c16a5c209e824a47c76aa2b6df5773ec8a56a2f3871590d92fb6"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.9'",
-            "version": "==2.8.0"
+            "version": "==2.8.1"
         },
         "markdown-it-py": {
             "hashes": [
@@ -1810,7 +1830,7 @@
                 "sha256:fac6e277a41163d27dfab5f4ec1f7a83fac94e170665a4a50191b545721c6521",
                 "sha256:fcd8f556cdc8cfe35e70efb92463082b7f43dd7e547eb071ffc36abc0ca4699b"
             ],
-            "markers": "python_version == '3.11'",
+            "markers": "python_version >= '3.10'",
             "version": "==2.1.1"
         },
         "ordered-set": {
@@ -2024,11 +2044,11 @@
         },
         "prometheus-client": {
             "hashes": [
-                "sha256:287629d00b147a32dcb2be0b9df905da599b2d82f80377083ec8463309a4bb89",
-                "sha256:cde524a85bce83ca359cc837f28b8c0db5cac7aa653a588fd7e84ba061c329e7"
+                "sha256:4fa6b4dd0ac16d58bb587c04b1caae65b8c5043e85f778f42f5f632f6af2e166",
+                "sha256:96c83c606b71ff2b0a433c98889d275f51ffec6c5e267de37c7a2b5c9aa9233e"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==0.20.0"
+            "version": "==0.21.0"
         },
         "prompt-toolkit": {
             "hashes": [
@@ -2670,6 +2690,14 @@
             "markers": "python_version >= '3.7'",
             "version": "==26.2.0"
         },
+        "radon": {
+            "hashes": [
+                "sha256:632cc032364a6f8bb1010a2f6a12d0f14bc7e5ede76585ef29dc0cecf4cd8859",
+                "sha256:d1ac0053943a893878940fedc8b19ace70386fc9c9bf0a09229a44125ebf45b5"
+            ],
+            "index": "pypi",
+            "version": "==6.0.1"
+        },
         "rasterio": {
             "hashes": [
                 "sha256:04464e06a881c7447d91d92922a5f731131fa7d070f1b77b5a3fafc423bdd135",
@@ -3218,11 +3246,11 @@
         },
         "tzdata": {
             "hashes": [
-                "sha256:2674120f8d891909751c38abcdfd386ac0a5a1127954fbc332af6b5ceae07efd",
-                "sha256:9068bc196136463f5245e51efda838afa15aaeca9903f49050dfa2679db4d252"
+                "sha256:7d85cc416e9382e69095b7bdf4afd9e3880418a2413feec7069d533d6b4e31cc",
+                "sha256:a48093786cdcde33cad18c2555e8532f34422074448fbc874186f0abd79565cd"
             ],
             "markers": "python_version >= '2'",
-            "version": "==2024.1"
+            "version": "==2024.2"
         },
         "uri-template": {
             "hashes": [