diff --git a/.github/workflows/pr_checks_backend.yml b/.github/workflows/pr_checks_backend.yml index 0730bdc3..9557ebc3 100644 --- a/.github/workflows/pr_checks_backend.yml +++ b/.github/workflows/pr_checks_backend.yml @@ -9,6 +9,7 @@ on: - 'Dockerfile-pg' - 'init_pg.sql' - 'docker-compose.yml' + workflow_dispatch: jobs: build: @@ -29,46 +30,42 @@ jobs: with: python-version: '3.11.4' - - name: Run Black Formatter in Docker + - name: Run Ruff Formatter in Docker run: | cd data docker-compose run --rm formatter continue-on-error: true - - name: Run Flake8 + - name: Run Ruff Linter in Docker run: | cd data - pip install flake8 - flake8 . + docker-compose run --rm linter continue-on-error: true - - name: Install dependencies and build Docker images + - name: Build vacant-lots-proj run: | cd data - docker-compose pull - docker-compose build + docker-compose build vacant-lots-proj - - name: Run vacant-lots-proj + - name: Build data-fetcher run: | cd data - docker-compose up -d vacant-lots-proj - continue-on-error: true + docker-compose build data-fetcher - - name: Build and check Postgres container + - name: Run all services run: | cd data - docker-compose build postgres - continue-on-error: true + docker-compose up -d - name: Check build status if: failure() run: | - echo "The vacant-lots-proj or postgres container failed to build and run." + echo "One or more services failed to build and run." exit 1 - name: Report success if: success() - run: echo "The vacant-lots-proj and postgres container built and ran successfully." + run: echo "All services built and ran successfully." - name: Check formatter and linter status if: failure() diff --git a/.gitignore b/.gitignore index 4c65f94b..09f01eff 100644 --- a/.gitignore +++ b/.gitignore @@ -7,6 +7,7 @@ data.env .idea data/src/tmp .DS_Store +/data/src/local_outputs/ ## App diff --git a/.vscode/settings.json b/.vscode/settings.json index 67c22a62..b6ec6630 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -5,17 +5,17 @@ "${workspaceFolder}/data/src", "${workspaceFolder}/data/src/awkde" ], - "python.testing.pytestEnabled": true, - "python.testing.cwd": "${workspaceFolder}/data/src", "[python]": { "editor.formatOnSave": true, "editor.codeActionsOnSave": { + "source.fixAll": "explicit", "source.organizeImports": "explicit" }, - "editor.defaultFormatter": "ms-python.black-formatter" + "editor.defaultFormatter": "charliermarsh.ruff" }, - "python.formatting.provider": "black", - "python.linting.flake8Enabled": true, - "python.linting.enabled": true, - "python.linting.flake8Args": ["--max-line-length=88"] + "notebook.formatOnSave.enabled": true, + "notebook.codeActionsOnSave": { + "notebook.source.fixAll": "explicit", + "notebook.source.organizeImports": "explicit" + } } diff --git a/data/Dockerfile-fetch-data b/data/Dockerfile-fetch-data new file mode 100644 index 00000000..ba0e1b75 --- /dev/null +++ b/data/Dockerfile-fetch-data @@ -0,0 +1,14 @@ +# Use the existing main container image +FROM vacant-lots-proj:latest + +# Set the working directory in the container +WORKDIR /usr/src/app + +# Copy the fetch_and_save_data.py script to the container +COPY src/fetch_and_save_data.py ./ + +# Ensure Pipenv and dependencies are installed +RUN pipenv install --ignore-pipfile --dev + +# Set the default command to run the script with pipenv and python +ENTRYPOINT ["sh", "-c", "pipenv run python ./fetch_and_save_data.py \"$@\"", "--"] diff --git a/data/docker-compose.yml b/data/docker-compose.yml index 486c8ad6..753ba339 100644 --- a/data/docker-compose.yml +++ b/data/docker-compose.yml @@ -2,7 +2,8 @@ services: vacant-lots-proj: build: context: . - network: host + dockerfile: Dockerfile + image: vacant-lots-proj:latest environment: - GOOGLE_APPLICATION_CREDENTIALS=/app/service-account-key.json - CFP_MAPBOX_TOKEN_UPLOADER @@ -16,7 +17,6 @@ services: - ~/.config/gcloud/application_default_credentials.json:/app/service-account-key.json - /etc/timezone:/etc/timezone:ro - /etc/localtime:/etc/localtime:ro - extra_hosts: - host.docker.internal:host-gateway network_mode: 'host' @@ -24,22 +24,27 @@ services: formatter: build: context: . - network: host volumes: - ./src:/usr/src/app - command: sh -c "pipenv run black /usr/src/app" + command: sh -c "pip install ruff && ruff /usr/src/app --fix || exit 0" + network_mode: 'host' + + linter: + build: + context: . + volumes: + - ./src:/usr/src/app + command: sh -c "pip install ruff && ruff check /usr/src/app || exit 0" network_mode: 'host' streetview: build: context: . - network: host environment: - GOOGLE_APPLICATION_CREDENTIALS=/app/service-account-key.json - CLEAN_GREEN_GOOGLE_KEY - VACANT_LOTS_DB - GOOGLE_CLOUD_BUCKET_NAME - volumes: - ./src:/usr/src/app - ~/.config/gcloud/application_default_credentials.json:/app/service-account-key.json @@ -55,7 +60,6 @@ services: build: context: . dockerfile: Dockerfile-pg - network: host environment: - PGPORT=5433 - POSTGRES_PASSWORD @@ 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If the file is not at least this size, don't upload to the GCP bucket as the file may be corrupted, e.g. a source vacant properties dataset was incomplete with not enough features.""" + def is_docker() -> bool: """ whether we are running in Docker or not, e.g. in ide or cl environment diff --git a/data/src/fetch_and_save_data.py b/data/src/fetch_and_save_data.py new file mode 100644 index 00000000..be77c7d1 --- /dev/null +++ b/data/src/fetch_and_save_data.py @@ -0,0 +1,50 @@ +import argparse +import os +import zipfile + +import geopandas as gpd +from sqlalchemy import create_engine + + +def fetch_data(connection_string, sql_query, geom_col): + engine = create_engine(connection_string) + gdf = gpd.read_postgis(sql=sql_query, con=engine, geom_col=geom_col) + return gdf + + +def save_file(gdf, filename, zipped): + os.makedirs(os.path.dirname(filename), exist_ok=True) + + if filename.endswith(".parquet"): + gdf.to_parquet(filename) + else: + temp_filename = filename + gdf.to_file(temp_filename) + + if zipped: + zip_filename = f"{os.path.splitext(filename)[0]}.zip" + with zipfile.ZipFile(zip_filename, "w", zipfile.ZIP_DEFLATED) as zipf: + zipf.write(temp_filename, os.path.basename(temp_filename)) + os.remove(temp_filename) + + +def main(output_filename, zipped): + connection_string = os.getenv("VACANT_LOTS_DB") + sql_query = "SELECT * FROM vacant_properties_end;" + geom_col = "geometry" + gdf = fetch_data(connection_string, sql_query, geom_col) + save_file(gdf, output_filename, zipped) + + +if __name__ == "__main__": + parser = argparse.ArgumentParser( + description="Fetch data from PostGIS and save as a file." + ) + parser.add_argument( + "output_filename", type=str, help="The output filename for the data." + ) + parser.add_argument( + "--zipped", action="store_true", help="Whether to zip the output file." + ) + args = parser.parse_args() + main(args.output_filename, args.zipped)