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Can't build project using Docker image #140

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Dender46 opened this issue Nov 12, 2020 · 11 comments
Open

Can't build project using Docker image #140

Dender46 opened this issue Nov 12, 2020 · 11 comments

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@Dender46
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When I try to do anything with bazel (for example run bazel build -c opt //deeplearning/clgen or bazel run //tools:whoami), it tries to fetch package '@requirements//' for 3 minutes, then gives up and throws error.

Trying to build project using Docker results in this weird error:

root@332faa425a0b:/phd/clgen# bazel build //deeplearning/clgen --record_rule_instantiation_callstack=true
INFO: Repository requirements instantiated at:
  /phd/clgen/WORKSPACE:403:1: in <toplevel>
  /root/.cache/bazel/_bazel_root/d5e059ddd51b27bfabca65b48652813d/external/rules_python/python/pip.bzl:128:5: in pip3_import
Repository rule pip_import defined at:
  /root/.cache/bazel/_bazel_root/d5e059ddd51b27bfabca65b48652813d/external/rules_python/python/pip.bzl:51:14: in <toplevel>
ERROR: An error occurred during the fetch of repository 'requirements':
   pip_import failed:  ()
ERROR: no such package '@requirements//': pip_import failed:  ()
INFO: Elapsed time: 179.892s
INFO: 0 processes.
FAILED: Build did NOT complete successfully (0 packages loaded)

Here is the output from script ./tools/whoami.sh :

tools/workspace_status.txt
==========================
cat: tools/workspace_status.txt: No such file or directory

/etc/os-release
===============
PRETTY_NAME="Debian GNU/Linux 10 (buster)"
NAME="Debian GNU/Linux"
VERSION_ID="10"
VERSION="10 (buster)"
VERSION_CODENAME=buster
ID=debian
HOME_URL="https://www.debian.org/"
SUPPORT_URL="https://www.debian.org/support"
BUG_REPORT_URL="https://bugs.debian.org/"
/usr/local/bin/python

Python
======
Path:    /usr/local/bin/python
Version: Python 3.7.6
absl-py==0.9.0
astor==0.8.1
gast==0.3.2
google-pasta==0.1.8
grpcio==1.26.0
h5py==2.10.0
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.0
Markdown==3.1.1
numpy==1.18.1
protobuf==3.11.2
pycrypto==2.6.1
six==1.13.0
sqlparse==0.3.1
tensorboard==1.14.0
tensorflow==1.14.0
tensorflow-estimator==1.14.0
termcolor==1.1.0
Werkzeug==0.16.0
wrapt==1.11.2
/usr/local/bin/python3

Python 3
========
Path:    /usr/local/bin/python3
Version: Python 3.7.6
absl-py==0.9.0
astor==0.8.1
gast==0.3.2
google-pasta==0.1.8
grpcio==1.26.0
h5py==2.10.0
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.0
Markdown==3.1.1
numpy==1.18.1
protobuf==3.11.2
pycrypto==2.6.1
six==1.13.0
sqlparse==0.3.1
tensorboard==1.14.0
tensorflow==1.14.0
tensorflow-estimator==1.14.0
termcolor==1.1.0
Werkzeug==0.16.0
wrapt==1.11.2
@ChrisCummins
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Owner

Hi Dmitriy, thanks for the detailed bug report. It's been a while since I've used the docker images but I'll have a go and see if I can reproduce locally. In the meantime, can you please confirm that your docker image has a working and stable internet connection? You could try something like:

$ wget wikipedia.org

Cheers,
Chris

@Dender46
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Author

Hi Chris, thanks for replying.

I tried the command, and it seems like internet connection is stable, I got index.html from wikipedia. Btw, when running bazel command, that was fetching packages, for a split second I could see that it was pulling them successfully, but getting stuck exactly on "@requirements".

If you need more information or anything, I would be glad to provide :)

@ChrisCummins
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Owner

Thanks for following up. The pip_import stage that is failing for you does a lot of work: it has to download and compile all of the python packages in requirements.txt from source. As a result, there are a lot of things that can go wrong, and, as you've seen, it doesn't produce very helpful error messages :)

Some of the common causes are failures are:

  • one of the packages in requirements.txt can’t be found (such as a package that was removed from pypi)
  • there was an error downloading a package, such as a network failure
  • compiling one of the packages fails, possible due to some missing C library dependency

What would be really helpful would be if you could try and install the packages in the docker environment yourself, using:

python -m pip install -r requirements.txt

If the above succeeds, we know the error is with bazel. If it doesn’t succeed, the error message might help you figure out the root cause (especially if it's a missing dependency). If it isn't obvious what causes the error, post the full output here and I'll take a look.

Cheers,
Chris

@Dender46
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Author

Sadly, command above didn't fix the problem. It updated some packages, said that operation was successful, but running bazel lead to the same problem :(
I wantув to do it in docker, because on my machine I also encountered some problems, and couldn't build code. Also I got error output, and on my machine it was different. I will try to comeback with more info this weekend or next week.

Thanks for the help, if I get an update to the situation - I will be sure to tell you. If there is anything else you know that might help - I would be glad to hear.

Have a good one <3

@ChrisCummins
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Owner

Sorry to hear about this :( Yes, if python -m pip install -r requirements.txt succeeds but the bazel command fails, this suggests that the error is in bazel. That can be pretty tricky to debug and fix. I'll try and find some time next week to try and diagnose and fix the problem, or at least provide a hacky workaround!

Cheers,
Chris

@Dender46
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Thanks in advance :)

@Dender46
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@ChrisCummins I tried locally to build project on my mac. It seems like the problem is the same (I'm not really sure though), but I got more error output. Also I updated mac to Big Sur, but the problem was on previous Catalina as well. Before building I did type in python -m pip install -r requirements.txt just in case, got one problem with mysqlclient but fixed it, and there were no more problems with installing requirements. You can find almost at the beginning of output an error line, that is similar to what I got using Docker:

ERROR: An error occurred during the fetch of repository 'requirements':

Here is the full output of running build command:

~/D/clgen ❯❯❯ bazel build -c opt //deeplearning/clgen
Extracting Bazel installation...
Starting local Bazel server and connecting to it...
INFO: Repository requirements instantiated at:
  /Users/dender-mac/Documents/clgen/WORKSPACE:403:12: in <toplevel>
  /private/var/tmp/_bazel_dender-mac/c03b13250633b8a2bfd6c9a3ab565241/external/rules_python/python/pip.bzl:128:15: in pip3_import
Repository rule pip_import defined at:
  /private/var/tmp/_bazel_dender-mac/c03b13250633b8a2bfd6c9a3ab565241/external/rules_python/python/pip.bzl:51:29: in <toplevel>
ERROR: An error occurred during the fetch of repository 'requirements':
   Traceback (most recent call last):
        File "/private/var/tmp/_bazel_dender-mac/c03b13250633b8a2bfd6c9a3ab565241/external/rules_python/python/pip.bzl", line 49, column 13, in _pip_import_impl
                fail("pip_import failed: %s (%s)" % (result.stdout, result.stderr))
Error in fail: pip_import failed: Collecting absl-py==0.7.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 5))
  Downloading https://files.pythonhosted.org/packages/31/bc/ab68120d1d89ae23b694a55fe2aece2f91194313b71f9b05a80b32d3c24b/absl-py-0.7.0.tar.gz (96kB)
Collecting appdirs==1.4.3 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/56/eb/810e700ed1349edde4cbdc1b2a21e28cdf115f9faf263f6bbf8447c1abf3/appdirs-1.4.3-py2.py3-none-any.whl
  Saved ./appdirs-1.4.3-py2.py3-none-any.whl
Collecting appnope==0.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 7))
  Downloading https://files.pythonhosted.org/packages/87/a9/7985e6a53402f294c8f0e8eff3151a83f1fb901fa92909bb3ff29b4d22af/appnope-0.1.0-py2.py3-none-any.whl
  Saved ./appnope-0.1.0-py2.py3-none-any.whl
Collecting ascii_art==0.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 8))
  Downloading https://files.pythonhosted.org/packages/01/c7/c31ea8d53d304e6430e36d40475c058e5a223a3c595d723804bb465777de/ascii_art-0.1.0-py2.py3-none-any.whl
  Saved ./ascii_art-0.1.0-py2.py3-none-any.whl
Collecting aspy.refactor-imports==1.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/ac/2b/55535e3df8275bad51b0ca9c06ba68665952541f3e80184b82b8fc55b745/aspy.refactor_imports-1.1.0-py2.py3-none-any.whl
  Saved ./aspy.refactor_imports-1.1.0-py2.py3-none-any.whl
Collecting astroid==1.6.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/cb/8c/18fefaf865c3e48ed31d60d53a8f85ba7e8b27fe9bd115cecae876a8d58e/astroid-1.6.1-py2.py3-none-any.whl (288kB)
  Saved ./astroid-1.6.1-py2.py3-none-any.whl
Collecting attrs==19.3.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 11))
  Downloading https://files.pythonhosted.org/packages/a2/db/4313ab3be961f7a763066401fb77f7748373b6094076ae2bda2806988af6/attrs-19.3.0-py2.py3-none-any.whl
  Saved ./attrs-19.3.0-py2.py3-none-any.whl
Collecting autoenv==1.0.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 12))
  Downloading https://files.pythonhosted.org/packages/8f/4f/e6cb9dba8138dee540041124ba17db398c5e5c5fa8a46ee4a24d24621d3a/autoenv-1.0.0.tar.gz
Collecting backports-abc==0.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 13))
  Downloading https://files.pythonhosted.org/packages/7d/56/6f3ac1b816d0cd8994e83d0c4e55bc64567532f7dc543378bd87f81cebc7/backports_abc-0.5-py2.py3-none-any.whl
  Saved ./backports_abc-0.5-py2.py3-none-any.whl
Collecting backports.functools-lru-cache==1.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 14))
  Downloading https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
  Saved ./backports.functools_lru_cache-1.5-py2.py3-none-any.whl
Collecting backports.shutil-get-terminal-size==1.0.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 15))
  Downloading https://files.pythonhosted.org/packages/7d/cd/1750d6c35fe86d35f8562091737907f234b78fdffab42b29c72b1dd861f4/backports.shutil_get_terminal_size-1.0.0-py2.py3-none-any.whl
  Saved ./backports.shutil_get_terminal_size-1.0.0-py2.py3-none-any.whl
Collecting bibtexparser==1.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 16))
  Downloading https://files.pythonhosted.org/packages/1f/cb/c30ee322d69a569423edbcc9cf544edc5d634f3340f448c918c8a3cbccf0/bibtexparser-1.1.0.tar.gz (46kB)
Collecting bleach==1.5.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 17))
  Downloading https://files.pythonhosted.org/packages/33/70/86c5fec937ea4964184d4d6c4f0b9551564f821e1c3575907639036d9b90/bleach-1.5.0-py2.py3-none-any.whl
  Saved ./bleach-1.5.0-py2.py3-none-any.whl
Collecting bokeh==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/54/4f/e6554176080d5cb809a20f36b8723ded05872c60f72e791efd6f2a9346bd/bokeh-1.0.2.tar.gz (16.2MB)
Collecting cached-property==1.5.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 19))
  Downloading https://files.pythonhosted.org/packages/3b/86/85c1be2e8db9e13ef9a350aecd6dea292bd612fa288c2f40d035bb750ded/cached_property-1.5.1-py2.py3-none-any.whl
  Saved ./cached_property-1.5.1-py2.py3-none-any.whl
Collecting certifi==2018.4.16 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 20))
  Downloading https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl (150kB)
  Saved ./certifi-2018.4.16-py2.py3-none-any.whl
Collecting cffi==1.11.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/e7/a7/4cd50e57cc6f436f1cc3a7e8fa700ff9b8b4d471620629074913e3735fb2/cffi-1.11.5.tar.gz (438kB)
Collecting chardet==3.0.4 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 22))
  Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB)
  Saved ./chardet-3.0.4-py2.py3-none-any.whl
Collecting checksumdir==1.0.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 23))
  Downloading https://files.pythonhosted.org/packages/31/81/5e9d1f75ce9e54b1a2c6e9284e4bf60103e4537c235e15ca75f617508809/checksumdir-1.0.5.tar.gz
Collecting Click==7.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 24))
  Downloading https://files.pythonhosted.org/packages/fa/37/45185cb5abbc30d7257104c434fe0b07e5a195a6847506c074527aa599ec/Click-7.0-py2.py3-none-any.whl (81kB)
  Saved ./Click-7.0-py2.py3-none-any.whl
Collecting configparser==3.5.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 25))
  Downloading https://files.pythonhosted.org/packages/7c/69/c2ce7e91c89dc073eb1aa74c0621c3eefbffe8216b3f9af9d3885265c01c/configparser-3.5.0.tar.gz
Collecting coverage==4.5.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 26))
  Downloading https://files.pythonhosted.org/packages/35/fe/e7df7289d717426093c68d156e0fd9117c8f4872b6588e8a8928a0f68424/coverage-4.5.1.tar.gz (379kB)
Collecting cpplint==1.3.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 27))
  Downloading https://files.pythonhosted.org/packages/95/42/27a16ef7fc609aba82bec923e2d29a1fa163bc95a267eaf1acc780e949fc/cpplint-1.3.0.tar.gz (71kB)
Collecting cycler==0.10.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 28))
  Downloading https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
  Saved ./cycler-0.10.0-py2.py3-none-any.whl
Collecting dash==0.39.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 29))
  Downloading https://files.pythonhosted.org/packages/38/c0/353ba9f56f171389f0b4985f0481805219fc1921d651586c51345b89c1ea/dash-0.39.0.tar.gz (40kB)
Collecting dash-core-components==0.44.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 30))
  Downloading https://files.pythonhosted.org/packages/07/8b/e7193b60288f62c6c40da7d3fdbd01ccdc6752dbf25e9ef60912a5948938/dash_core_components-0.44.0.tar.gz (4.2MB)
Collecting dash-html-components==0.14.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 31))
  Downloading https://files.pythonhosted.org/packages/08/1f/943c0f90d957fdff6c5968ea80694b2959d0b0ec959be17a1478e3c97e5a/dash_html_components-0.14.0.tar.gz (537kB)
Collecting dash-renderer==0.20.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 32))
  Downloading https://files.pythonhosted.org/packages/c4/dd/f686321d054bb1e145d3a7d1f6600516de535b0d597bcf7701dbb96b1262/dash_renderer-0.20.0.tar.gz (920kB)
Collecting dash-table==3.6.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 33))
  Downloading https://files.pythonhosted.org/packages/a3/3a/eae584bb7eccdf93d2931c4ebf43e55937cf22d51ad63551241fc83d68fc/dash_table-3.6.0.tar.gz (468kB)
Collecting dataclasses==0.6 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 34))
  Downloading https://files.pythonhosted.org/packages/26/2f/1095cdc2868052dd1e64520f7c0d5c8c550ad297e944e641dbf1ffbb9a5d/dataclasses-0.6-py3-none-any.whl
  Saved ./dataclasses-0.6-py3-none-any.whl
Collecting decorator==4.3.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 35))
  Downloading https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
  Saved ./decorator-4.3.0-py2.py3-none-any.whl
Collecting detect-secrets==0.12.4 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 36))
  Downloading https://files.pythonhosted.org/packages/61/78/3b90f866853efc9c545860f4c11dd0ed04949fae03a34c34afe6defa8aba/detect_secrets-0.12.4-py2.py3-none-any.whl (48kB)
  Saved ./detect_secrets-0.12.4-py2.py3-none-any.whl
Collecting dm-sonnet==1.23 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 39))
  Downloading https://files.pythonhosted.org/packages/83/c7/e32a7d83724f26e921dcdd7ddd8f30e6e92cb4e68c740960307616b6ada8/dm_sonnet-1.23-py3-none-any.whl (616kB)
  Saved ./dm_sonnet-1.23-py3-none-any.whl
Collecting docutils==0.14 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 40))
  Downloading https://files.pythonhosted.org/packages/36/fa/08e9e6e0e3cbd1d362c3bbee8d01d0aedb2155c4ac112b19ef3cae8eed8d/docutils-0.14-py3-none-any.whl (543kB)
  Saved ./docutils-0.14-py3-none-any.whl
Collecting editdistance==0.3.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 41))
  Downloading https://files.pythonhosted.org/packages/a8/08/97ed5b60023ab4b67a46ee24bf1d3db93a9abc5b3be7e8f90de18160aaed/editdistance-0.3.1.tar.gz
Collecting entrypoints==0.2.3 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 42))
  Downloading https://files.pythonhosted.org/packages/cc/8b/4eefa9b47f1910b3d2081da67726b066e379b04ca897acfe9f92bac56147/entrypoints-0.2.3-py2.py3-none-any.whl
  Saved ./entrypoints-0.2.3-py2.py3-none-any.whl
Collecting enum34==1.1.6 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 43))
  Downloading https://files.pythonhosted.org/packages/af/42/cb9355df32c69b553e72a2e28daee25d1611d2c0d9c272aa1d34204205b2/enum34-1.1.6-py3-none-any.whl
  Saved ./enum34-1.1.6-py3-none-any.whl
Collecting fasteners==0.15 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 44))
  Downloading https://files.pythonhosted.org/packages/18/bd/55eb2d6397b9c0e263af9d091ebdb756b15756029b3cededf6461481bc63/fasteners-0.15-py2.py3-none-any.whl
  Saved ./fasteners-0.15-py2.py3-none-any.whl
Collecting flaky==3.6.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 45))
  Downloading https://files.pythonhosted.org/packages/fe/12/0f169abf1aa07c7edef4855cca53703d2e6b7ecbded7829588ac7e7e3424/flaky-3.6.1-py2.py3-none-any.whl
  Saved ./flaky-3.6.1-py2.py3-none-any.whl
Collecting Flask==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 46))
  Downloading https://files.pythonhosted.org/packages/7f/e7/08578774ed4536d3242b14dacb4696386634607af824ea997202cd0edb4b/Flask-1.0.2-py2.py3-none-any.whl (91kB)
  Saved ./Flask-1.0.2-py2.py3-none-any.whl
Collecting Flask-Compress==1.4.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 47))
  Downloading https://files.pythonhosted.org/packages/0e/2a/378bd072928f6d92fd8c417d66b00c757dc361c0405a46a0134de6fd323d/Flask-Compress-1.4.0.tar.gz
Collecting flask-cors==3.0.6 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 48))
  Downloading https://files.pythonhosted.org/packages/d1/db/f3495569d5c3e2bdb9fb8a66c54503364abb6f35a9da2227cf5c9c50dc42/Flask_Cors-3.0.6-py2.py3-none-any.whl
  Saved ./Flask_Cors-3.0.6-py2.py3-none-any.whl
Collecting Flask-SQLalchemy==2.4.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 49))
  Downloading https://files.pythonhosted.org/packages/08/ca/582442cad71504a1514a2f053006c8bb128844133d6076a4df17117545fa/Flask_SQLAlchemy-2.4.0-py2.py3-none-any.whl
  Saved ./Flask_SQLAlchemy-2.4.0-py2.py3-none-any.whl
Collecting fs==2.4.8 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 50))
  Downloading https://files.pythonhosted.org/packages/25/79/d0aaf93d206b4d8311814fde92a0f1ecaa8ee260bbe1ab084e6568d58cf2/fs-2.4.8-py2.py3-none-any.whl (125kB)
  Saved ./fs-2.4.8-py2.py3-none-any.whl
Collecting fs.sshfs==0.11.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 51))
  Downloading https://files.pythonhosted.org/packages/95/41/22eec4774f1d7d79c5539b56a2130608dd59246de90a6332750564d79095/fs.sshfs-0.11.1-py2.py3-none-any.whl
  Saved ./fs.sshfs-0.11.1-py2.py3-none-any.whl
Collecting funcsigs==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 52))
  Downloading https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
  Saved ./funcsigs-1.0.2-py2.py3-none-any.whl
Collecting futures==3.1.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 53))
  Downloading https://files.pythonhosted.org/packages/05/80/f41cca0ea1ff69bce7e7a7d76182b47bb4e1a494380a532af3e8ee70b9ec/futures-3.1.1-py3-none-any.whl
  Saved ./futures-3.1.1-py3-none-any.whl
Collecting fuzzywuzzy==0.16.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 54))
  Downloading https://files.pythonhosted.org/packages/3b/36/be990a35c7e8ed9dc176c43b5699cd971cec0b6f9ef858843374171df4f2/fuzzywuzzy-0.16.0-py2.py3-none-any.whl
  Saved ./fuzzywuzzy-0.16.0-py2.py3-none-any.whl
Collecting gast==0.2.2. (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 55))
  Downloading https://files.pythonhosted.org/packages/4e/35/11749bf99b2d4e3cceb4d55ca22590b0d7c2c62b9de38ac4a4a7f4687421/gast-0.2.2.tar.gz
Collecting gitdb==4.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 56))
  Downloading https://files.pythonhosted.org/packages/1e/f5/8f84b3bf9d94bdf2454a302f2fa375832b53660ea532586b8a55ff16ae9a/gitdb-4.0.2-py3-none-any.whl (63kB)
  Saved ./gitdb-4.0.2-py3-none-any.whl
Collecting GitPython==3.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 57))
  Downloading https://files.pythonhosted.org/packages/d3/2f/6a366d56c9b1355b0880be9ea66b166cb3536392638d8d91413ec66305ad/GitPython-3.1.0-py3-none-any.whl (450kB)
  Saved ./GitPython-3.1.0-py3-none-any.whl
Collecting GPUtil==1.4.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 58))
  Downloading https://files.pythonhosted.org/packages/ed/0e/5c61eedde9f6c87713e89d794f01e378cfd9565847d4576fa627d758c554/GPUtil-1.4.0.tar.gz
Collecting graph_nets==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 59))
  Downloading https://files.pythonhosted.org/packages/7e/7b/7f928d569f7c16720df52038bbf853cb7e2f630a1baf70b2181786c2a4e7/graph_nets-1.0.2.tar.gz (51kB)
Collecting graphviz==0.9 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 60))
  Downloading https://files.pythonhosted.org/packages/47/87/313cd4ea4f75472826acb74c57f94fc83e04ba93e4ccf35656f6b7f502e2/graphviz-0.9-py2.py3-none-any.whl
  Saved ./graphviz-0.9-py2.py3-none-any.whl
Collecting grpcio-tools==1.18.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 61))
  Downloading https://files.pythonhosted.org/packages/72/33/c23dc13833e449436b6b36b1156f766a84b93fb03c286e239e3c8382df99/grpcio-tools-1.18.0.tar.gz (1.9MB)
Collecting grpcio==1.18.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 62))
  Downloading https://files.pythonhosted.org/packages/90/2e/f432e69f86961393c22a6c4490aafdbb94533deba33f5ea2d5651770aa21/grpcio-1.18.0.tar.gz (14.6MB)
Collecting gspread==3.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 63))
  Downloading https://files.pythonhosted.org/packages/43/f8/45bd4a1419fd65ecc02eeaceb92f9dc72aca20c32e766a18d495c68006db/gspread-3.1.0-py3-none-any.whl
  Saved ./gspread-3.1.0-py3-none-any.whl
Collecting gspread-dataframe==3.0.3 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 64))
  Downloading https://files.pythonhosted.org/packages/da/84/18b24575a3e30a4104f399e3d24796d8bd9f6a64fced19a6aa7ae8ee43c1/gspread_dataframe-3.0.3-py2.py3-none-any.whl
  Saved ./gspread_dataframe-3.0.3-py2.py3-none-any.whl
Collecting gym==0.10.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 65))
  Downloading https://files.pythonhosted.org/packages/9b/50/ed4a03d2be47ffd043be2ee514f329ce45d98a30fe2d1b9c61dea5a9d861/gym-0.10.5.tar.gz (1.5MB)
Collecting h5py==2.9.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 66))
  Downloading https://files.pythonhosted.org/packages/43/27/a6e7dcb8ae20a4dbf3725321058923fec262b6f7835179d78ccc8d98deec/h5py-2.9.0.tar.gz (287kB)
    Complete output from command python setup.py egg_info:
      Cache entry deserialization failed, entry ignored
    ERROR: Failed to build one or more wheels
    Traceback (most recent call last):
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/installer.py", line 128, in fetch_build_egg
        subprocess.check_call(cmd)
      File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 364, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['/Applications/Xcode.app/Contents/Developer/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpixv63gf7', '--quiet', 'numpy>=1.7']' returned non-zero exit status 1.
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/tmp/pip-build-n04q191k/h5py/setup.py", line 148, in <module>
        setup(
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/__init__.py", line 144, in setup
        _install_setup_requires(attrs)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/__init__.py", line 139, in _install_setup_requires
        dist.fetch_build_eggs(dist.setup_requires)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/dist.py", line 718, in fetch_build_eggs
        resolved_dists = pkg_resources.working_set.resolve(
      File "/tmp/tmp36yqfbdo/setuptools-tmp/pkg_resources/__init__.py", line 780, in resolve
        dist = best[req.key] = env.best_match(
      File "/tmp/tmp36yqfbdo/setuptools-tmp/pkg_resources/__init__.py", line 1065, in best_match
        return self.obtain(req, installer)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/pkg_resources/__init__.py", line 1077, in obtain
        return installer(requirement)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/dist.py", line 777, in fetch_build_egg
        return fetch_build_egg(self, req)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/installer.py", line 130, in fetch_build_egg
        raise DistutilsError(str(e))
    distutils.errors.DistutilsError: Command '['/Applications/Xcode.app/Contents/Developer/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpixv63gf7', '--quiet', 'numpy>=1.7']' returned non-zero exit status 1.
    
    ----------------------------------------
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Command "python setup.py egg_info" failed with error code 1 in /private/tmp/pip-build-n04q191k/h5py/
)
ERROR: no such package '@requirements//': pip_import failed: Collecting absl-py==0.7.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 5))
  Downloading https://files.pythonhosted.org/packages/31/bc/ab68120d1d89ae23b694a55fe2aece2f91194313b71f9b05a80b32d3c24b/absl-py-0.7.0.tar.gz (96kB)
Collecting appdirs==1.4.3 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/56/eb/810e700ed1349edde4cbdc1b2a21e28cdf115f9faf263f6bbf8447c1abf3/appdirs-1.4.3-py2.py3-none-any.whl
  Saved ./appdirs-1.4.3-py2.py3-none-any.whl
Collecting appnope==0.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 7))
  Downloading https://files.pythonhosted.org/packages/87/a9/7985e6a53402f294c8f0e8eff3151a83f1fb901fa92909bb3ff29b4d22af/appnope-0.1.0-py2.py3-none-any.whl
  Saved ./appnope-0.1.0-py2.py3-none-any.whl
Collecting ascii_art==0.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 8))
  Downloading https://files.pythonhosted.org/packages/01/c7/c31ea8d53d304e6430e36d40475c058e5a223a3c595d723804bb465777de/ascii_art-0.1.0-py2.py3-none-any.whl
  Saved ./ascii_art-0.1.0-py2.py3-none-any.whl
Collecting aspy.refactor-imports==1.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/ac/2b/55535e3df8275bad51b0ca9c06ba68665952541f3e80184b82b8fc55b745/aspy.refactor_imports-1.1.0-py2.py3-none-any.whl
  Saved ./aspy.refactor_imports-1.1.0-py2.py3-none-any.whl
Collecting astroid==1.6.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/cb/8c/18fefaf865c3e48ed31d60d53a8f85ba7e8b27fe9bd115cecae876a8d58e/astroid-1.6.1-py2.py3-none-any.whl (288kB)
  Saved ./astroid-1.6.1-py2.py3-none-any.whl
Collecting attrs==19.3.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 11))
  Downloading https://files.pythonhosted.org/packages/a2/db/4313ab3be961f7a763066401fb77f7748373b6094076ae2bda2806988af6/attrs-19.3.0-py2.py3-none-any.whl
  Saved ./attrs-19.3.0-py2.py3-none-any.whl
Collecting autoenv==1.0.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 12))
  Downloading https://files.pythonhosted.org/packages/8f/4f/e6cb9dba8138dee540041124ba17db398c5e5c5fa8a46ee4a24d24621d3a/autoenv-1.0.0.tar.gz
Collecting backports-abc==0.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 13))
  Downloading https://files.pythonhosted.org/packages/7d/56/6f3ac1b816d0cd8994e83d0c4e55bc64567532f7dc543378bd87f81cebc7/backports_abc-0.5-py2.py3-none-any.whl
  Saved ./backports_abc-0.5-py2.py3-none-any.whl
Collecting backports.functools-lru-cache==1.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 14))
  Downloading https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl
  Saved ./backports.functools_lru_cache-1.5-py2.py3-none-any.whl
Collecting backports.shutil-get-terminal-size==1.0.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 15))
  Downloading https://files.pythonhosted.org/packages/7d/cd/1750d6c35fe86d35f8562091737907f234b78fdffab42b29c72b1dd861f4/backports.shutil_get_terminal_size-1.0.0-py2.py3-none-any.whl
  Saved ./backports.shutil_get_terminal_size-1.0.0-py2.py3-none-any.whl
Collecting bibtexparser==1.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 16))
  Downloading https://files.pythonhosted.org/packages/1f/cb/c30ee322d69a569423edbcc9cf544edc5d634f3340f448c918c8a3cbccf0/bibtexparser-1.1.0.tar.gz (46kB)
Collecting bleach==1.5.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 17))
  Downloading https://files.pythonhosted.org/packages/33/70/86c5fec937ea4964184d4d6c4f0b9551564f821e1c3575907639036d9b90/bleach-1.5.0-py2.py3-none-any.whl
  Saved ./bleach-1.5.0-py2.py3-none-any.whl
Collecting bokeh==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/54/4f/e6554176080d5cb809a20f36b8723ded05872c60f72e791efd6f2a9346bd/bokeh-1.0.2.tar.gz (16.2MB)
Collecting cached-property==1.5.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 19))
  Downloading https://files.pythonhosted.org/packages/3b/86/85c1be2e8db9e13ef9a350aecd6dea292bd612fa288c2f40d035bb750ded/cached_property-1.5.1-py2.py3-none-any.whl
  Saved ./cached_property-1.5.1-py2.py3-none-any.whl
Collecting certifi==2018.4.16 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 20))
  Downloading https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl (150kB)
  Saved ./certifi-2018.4.16-py2.py3-none-any.whl
Collecting cffi==1.11.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/e7/a7/4cd50e57cc6f436f1cc3a7e8fa700ff9b8b4d471620629074913e3735fb2/cffi-1.11.5.tar.gz (438kB)
Collecting chardet==3.0.4 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 22))
  Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB)
  Saved ./chardet-3.0.4-py2.py3-none-any.whl
Collecting checksumdir==1.0.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 23))
  Downloading https://files.pythonhosted.org/packages/31/81/5e9d1f75ce9e54b1a2c6e9284e4bf60103e4537c235e15ca75f617508809/checksumdir-1.0.5.tar.gz
Collecting Click==7.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 24))
  Downloading https://files.pythonhosted.org/packages/fa/37/45185cb5abbc30d7257104c434fe0b07e5a195a6847506c074527aa599ec/Click-7.0-py2.py3-none-any.whl (81kB)
  Saved ./Click-7.0-py2.py3-none-any.whl
Collecting configparser==3.5.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 25))
  Downloading https://files.pythonhosted.org/packages/7c/69/c2ce7e91c89dc073eb1aa74c0621c3eefbffe8216b3f9af9d3885265c01c/configparser-3.5.0.tar.gz
Collecting coverage==4.5.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 26))
  Downloading https://files.pythonhosted.org/packages/35/fe/e7df7289d717426093c68d156e0fd9117c8f4872b6588e8a8928a0f68424/coverage-4.5.1.tar.gz (379kB)
Collecting cpplint==1.3.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 27))
  Downloading https://files.pythonhosted.org/packages/95/42/27a16ef7fc609aba82bec923e2d29a1fa163bc95a267eaf1acc780e949fc/cpplint-1.3.0.tar.gz (71kB)
Collecting cycler==0.10.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 28))
  Downloading https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
  Saved ./cycler-0.10.0-py2.py3-none-any.whl
Collecting dash==0.39.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 29))
  Downloading https://files.pythonhosted.org/packages/38/c0/353ba9f56f171389f0b4985f0481805219fc1921d651586c51345b89c1ea/dash-0.39.0.tar.gz (40kB)
Collecting dash-core-components==0.44.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 30))
  Downloading https://files.pythonhosted.org/packages/07/8b/e7193b60288f62c6c40da7d3fdbd01ccdc6752dbf25e9ef60912a5948938/dash_core_components-0.44.0.tar.gz (4.2MB)
Collecting dash-html-components==0.14.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 31))
  Downloading https://files.pythonhosted.org/packages/08/1f/943c0f90d957fdff6c5968ea80694b2959d0b0ec959be17a1478e3c97e5a/dash_html_components-0.14.0.tar.gz (537kB)
Collecting dash-renderer==0.20.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 32))
  Downloading https://files.pythonhosted.org/packages/c4/dd/f686321d054bb1e145d3a7d1f6600516de535b0d597bcf7701dbb96b1262/dash_renderer-0.20.0.tar.gz (920kB)
Collecting dash-table==3.6.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 33))
  Downloading https://files.pythonhosted.org/packages/a3/3a/eae584bb7eccdf93d2931c4ebf43e55937cf22d51ad63551241fc83d68fc/dash_table-3.6.0.tar.gz (468kB)
Collecting dataclasses==0.6 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 34))
  Downloading https://files.pythonhosted.org/packages/26/2f/1095cdc2868052dd1e64520f7c0d5c8c550ad297e944e641dbf1ffbb9a5d/dataclasses-0.6-py3-none-any.whl
  Saved ./dataclasses-0.6-py3-none-any.whl
Collecting decorator==4.3.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 35))
  Downloading https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
  Saved ./decorator-4.3.0-py2.py3-none-any.whl
Collecting detect-secrets==0.12.4 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 36))
  Downloading https://files.pythonhosted.org/packages/61/78/3b90f866853efc9c545860f4c11dd0ed04949fae03a34c34afe6defa8aba/detect_secrets-0.12.4-py2.py3-none-any.whl (48kB)
  Saved ./detect_secrets-0.12.4-py2.py3-none-any.whl
Collecting dm-sonnet==1.23 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 39))
  Downloading https://files.pythonhosted.org/packages/83/c7/e32a7d83724f26e921dcdd7ddd8f30e6e92cb4e68c740960307616b6ada8/dm_sonnet-1.23-py3-none-any.whl (616kB)
  Saved ./dm_sonnet-1.23-py3-none-any.whl
Collecting docutils==0.14 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 40))
  Downloading https://files.pythonhosted.org/packages/36/fa/08e9e6e0e3cbd1d362c3bbee8d01d0aedb2155c4ac112b19ef3cae8eed8d/docutils-0.14-py3-none-any.whl (543kB)
  Saved ./docutils-0.14-py3-none-any.whl
Collecting editdistance==0.3.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 41))
  Downloading https://files.pythonhosted.org/packages/a8/08/97ed5b60023ab4b67a46ee24bf1d3db93a9abc5b3be7e8f90de18160aaed/editdistance-0.3.1.tar.gz
Collecting entrypoints==0.2.3 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 42))
  Downloading https://files.pythonhosted.org/packages/cc/8b/4eefa9b47f1910b3d2081da67726b066e379b04ca897acfe9f92bac56147/entrypoints-0.2.3-py2.py3-none-any.whl
  Saved ./entrypoints-0.2.3-py2.py3-none-any.whl
Collecting enum34==1.1.6 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 43))
  Downloading https://files.pythonhosted.org/packages/af/42/cb9355df32c69b553e72a2e28daee25d1611d2c0d9c272aa1d34204205b2/enum34-1.1.6-py3-none-any.whl
  Saved ./enum34-1.1.6-py3-none-any.whl
Collecting fasteners==0.15 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 44))
  Downloading https://files.pythonhosted.org/packages/18/bd/55eb2d6397b9c0e263af9d091ebdb756b15756029b3cededf6461481bc63/fasteners-0.15-py2.py3-none-any.whl
  Saved ./fasteners-0.15-py2.py3-none-any.whl
Collecting flaky==3.6.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 45))
  Downloading https://files.pythonhosted.org/packages/fe/12/0f169abf1aa07c7edef4855cca53703d2e6b7ecbded7829588ac7e7e3424/flaky-3.6.1-py2.py3-none-any.whl
  Saved ./flaky-3.6.1-py2.py3-none-any.whl
Collecting Flask==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 46))
  Downloading https://files.pythonhosted.org/packages/7f/e7/08578774ed4536d3242b14dacb4696386634607af824ea997202cd0edb4b/Flask-1.0.2-py2.py3-none-any.whl (91kB)
  Saved ./Flask-1.0.2-py2.py3-none-any.whl
Collecting Flask-Compress==1.4.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 47))
  Downloading https://files.pythonhosted.org/packages/0e/2a/378bd072928f6d92fd8c417d66b00c757dc361c0405a46a0134de6fd323d/Flask-Compress-1.4.0.tar.gz
Collecting flask-cors==3.0.6 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 48))
  Downloading https://files.pythonhosted.org/packages/d1/db/f3495569d5c3e2bdb9fb8a66c54503364abb6f35a9da2227cf5c9c50dc42/Flask_Cors-3.0.6-py2.py3-none-any.whl
  Saved ./Flask_Cors-3.0.6-py2.py3-none-any.whl
Collecting Flask-SQLalchemy==2.4.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 49))
  Downloading https://files.pythonhosted.org/packages/08/ca/582442cad71504a1514a2f053006c8bb128844133d6076a4df17117545fa/Flask_SQLAlchemy-2.4.0-py2.py3-none-any.whl
  Saved ./Flask_SQLAlchemy-2.4.0-py2.py3-none-any.whl
Collecting fs==2.4.8 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 50))
  Downloading https://files.pythonhosted.org/packages/25/79/d0aaf93d206b4d8311814fde92a0f1ecaa8ee260bbe1ab084e6568d58cf2/fs-2.4.8-py2.py3-none-any.whl (125kB)
  Saved ./fs-2.4.8-py2.py3-none-any.whl
Collecting fs.sshfs==0.11.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 51))
  Downloading https://files.pythonhosted.org/packages/95/41/22eec4774f1d7d79c5539b56a2130608dd59246de90a6332750564d79095/fs.sshfs-0.11.1-py2.py3-none-any.whl
  Saved ./fs.sshfs-0.11.1-py2.py3-none-any.whl
Collecting funcsigs==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 52))
  Downloading https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
  Saved ./funcsigs-1.0.2-py2.py3-none-any.whl
Collecting futures==3.1.1 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 53))
  Downloading https://files.pythonhosted.org/packages/05/80/f41cca0ea1ff69bce7e7a7d76182b47bb4e1a494380a532af3e8ee70b9ec/futures-3.1.1-py3-none-any.whl
  Saved ./futures-3.1.1-py3-none-any.whl
Collecting fuzzywuzzy==0.16.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 54))
  Downloading https://files.pythonhosted.org/packages/3b/36/be990a35c7e8ed9dc176c43b5699cd971cec0b6f9ef858843374171df4f2/fuzzywuzzy-0.16.0-py2.py3-none-any.whl
  Saved ./fuzzywuzzy-0.16.0-py2.py3-none-any.whl
Collecting gast==0.2.2. (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 55))
  Downloading https://files.pythonhosted.org/packages/4e/35/11749bf99b2d4e3cceb4d55ca22590b0d7c2c62b9de38ac4a4a7f4687421/gast-0.2.2.tar.gz
Collecting gitdb==4.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 56))
  Downloading https://files.pythonhosted.org/packages/1e/f5/8f84b3bf9d94bdf2454a302f2fa375832b53660ea532586b8a55ff16ae9a/gitdb-4.0.2-py3-none-any.whl (63kB)
  Saved ./gitdb-4.0.2-py3-none-any.whl
Collecting GitPython==3.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 57))
  Downloading https://files.pythonhosted.org/packages/d3/2f/6a366d56c9b1355b0880be9ea66b166cb3536392638d8d91413ec66305ad/GitPython-3.1.0-py3-none-any.whl (450kB)
  Saved ./GitPython-3.1.0-py3-none-any.whl
Collecting GPUtil==1.4.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 58))
  Downloading https://files.pythonhosted.org/packages/ed/0e/5c61eedde9f6c87713e89d794f01e378cfd9565847d4576fa627d758c554/GPUtil-1.4.0.tar.gz
Collecting graph_nets==1.0.2 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 59))
  Downloading https://files.pythonhosted.org/packages/7e/7b/7f928d569f7c16720df52038bbf853cb7e2f630a1baf70b2181786c2a4e7/graph_nets-1.0.2.tar.gz (51kB)
Collecting graphviz==0.9 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 60))
  Downloading https://files.pythonhosted.org/packages/47/87/313cd4ea4f75472826acb74c57f94fc83e04ba93e4ccf35656f6b7f502e2/graphviz-0.9-py2.py3-none-any.whl
  Saved ./graphviz-0.9-py2.py3-none-any.whl
Collecting grpcio-tools==1.18.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 61))
  Downloading https://files.pythonhosted.org/packages/72/33/c23dc13833e449436b6b36b1156f766a84b93fb03c286e239e3c8382df99/grpcio-tools-1.18.0.tar.gz (1.9MB)
Collecting grpcio==1.18.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 62))
  Downloading https://files.pythonhosted.org/packages/90/2e/f432e69f86961393c22a6c4490aafdbb94533deba33f5ea2d5651770aa21/grpcio-1.18.0.tar.gz (14.6MB)
Collecting gspread==3.1.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 63))
  Downloading https://files.pythonhosted.org/packages/43/f8/45bd4a1419fd65ecc02eeaceb92f9dc72aca20c32e766a18d495c68006db/gspread-3.1.0-py3-none-any.whl
  Saved ./gspread-3.1.0-py3-none-any.whl
Collecting gspread-dataframe==3.0.3 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 64))
  Downloading https://files.pythonhosted.org/packages/da/84/18b24575a3e30a4104f399e3d24796d8bd9f6a64fced19a6aa7ae8ee43c1/gspread_dataframe-3.0.3-py2.py3-none-any.whl
  Saved ./gspread_dataframe-3.0.3-py2.py3-none-any.whl
Collecting gym==0.10.5 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 65))
  Downloading https://files.pythonhosted.org/packages/9b/50/ed4a03d2be47ffd043be2ee514f329ce45d98a30fe2d1b9c61dea5a9d861/gym-0.10.5.tar.gz (1.5MB)
Collecting h5py==2.9.0 (from -r /Users/dender-mac/Documents/clgen/requirements.txt (line 66))
  Downloading https://files.pythonhosted.org/packages/43/27/a6e7dcb8ae20a4dbf3725321058923fec262b6f7835179d78ccc8d98deec/h5py-2.9.0.tar.gz (287kB)
    Complete output from command python setup.py egg_info:
      Cache entry deserialization failed, entry ignored
    ERROR: Failed to build one or more wheels
    Traceback (most recent call last):
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/installer.py", line 128, in fetch_build_egg
        subprocess.check_call(cmd)
      File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/subprocess.py", line 364, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['/Applications/Xcode.app/Contents/Developer/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpixv63gf7', '--quiet', 'numpy>=1.7']' returned non-zero exit status 1.
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/tmp/pip-build-n04q191k/h5py/setup.py", line 148, in <module>
        setup(
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/__init__.py", line 144, in setup
        _install_setup_requires(attrs)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/__init__.py", line 139, in _install_setup_requires
        dist.fetch_build_eggs(dist.setup_requires)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/dist.py", line 718, in fetch_build_eggs
        resolved_dists = pkg_resources.working_set.resolve(
      File "/tmp/tmp36yqfbdo/setuptools-tmp/pkg_resources/__init__.py", line 780, in resolve
        dist = best[req.key] = env.best_match(
      File "/tmp/tmp36yqfbdo/setuptools-tmp/pkg_resources/__init__.py", line 1065, in best_match
        return self.obtain(req, installer)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/pkg_resources/__init__.py", line 1077, in obtain
        return installer(requirement)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/dist.py", line 777, in fetch_build_egg
        return fetch_build_egg(self, req)
      File "/tmp/tmp36yqfbdo/setuptools-tmp/setuptools/installer.py", line 130, in fetch_build_egg
        raise DistutilsError(str(e))
    distutils.errors.DistutilsError: Command '['/Applications/Xcode.app/Contents/Developer/usr/bin/python3', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpixv63gf7', '--quiet', 'numpy>=1.7']' returned non-zero exit status 1.
    
    ----------------------------------------
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Command "python setup.py egg_info" failed with error code 1 in /private/tmp/pip-build-n04q191k/h5py/
)
INFO: Elapsed time: 91.409s
INFO: 0 processes.
FAILED: Build did NOT complete successfully (0 packages loaded)

Here is the output of ./tools/whoami.sh

tools/workspace_status.txt
==========================
cat: tools/workspace_status.txt: No such file or directory
/Users/dender-mac/.pyenv/shims/python

Python
======
Path:    /Users/dender-mac/.pyenv/shims/python
Version: Python 3.7.3
absl-py==0.7.0
appdirs==1.4.3
appnope==0.1.0
ascii-art==0.1.0
aspy.refactor-imports==1.1.0
astor==0.8.1
astroid==1.6.1
astunparse==1.6.3
attrs==19.3.0
autoenv==1.0.0
backports-abc==0.5
backports.functools-lru-cache==1.5
backports.shutil-get-terminal-size==1.0.0
bcrypt==3.2.0
bibtexparser==1.1.0
bleach==1.5.0
bokeh==1.0.2
cached-property==1.5.1
cachetools==4.1.1
certifi==2018.4.16
cffi==1.11.5
chardet==3.0.4
checksumdir==1.0.5
Click==7.0
cloudpickle==1.6.0
configparser==3.5.0
coverage==4.5.1
cpplint==1.3.0
cryptography==2.9.2
cycler==0.10.0
dash==0.39.0
dash-core-components==0.44.0
dash-html-components==0.14.0
dash-renderer==0.20.0
dash-table==3.6.0
dask==2.30.0
dataclasses==0.6
decorator==4.3.0
detect-secrets==0.12.4
dm-sonnet==1.23
docutils==0.14
editdistance==0.3.1
entrypoints==0.2.3
enum34==1.1.6
fasteners==0.15
flaky==3.6.1
Flask==1.0.2
Flask-Compress==1.4.0
Flask-Cors==3.0.6
Flask-SQLAlchemy==2.4.0
fs==2.4.8
fs.sshfs==0.11.1
funcsigs==1.0.2
future==0.18.2
futures==3.1.1
fuzzywuzzy==0.16.0
gast==0.2.2
gitdb==4.0.2
GitPython==3.1.0
google-auth==1.23.0
google-auth-oauthlib==0.4.2
google-pasta==0.2.0
GPUtil==1.4.0
graph-nets==1.0.2
graphviz==0.9
grpcio==1.18.0
grpcio-tools==1.18.0
gspread==3.1.0
gspread-dataframe==3.0.3
gym==0.10.5
h5py==2.9.0
html5lib==0.9999999
httplib2==0.14.0
humanize==0.5.1
idna==2.6
importlib-metadata==0.23
inotify==0.2.10
ipaddress==1.0.23
ipdb==0.11
ipykernel==4.8.2
ipython==5.7.0
ipython-genutils==0.2.0
ipywidgets==7.1.2
isort==4.3.4
itsdangerous==1.1.0
jedi==0.11.1
Jinja2==2.10.1
joblib==0.17.0
jsonschema==2.6.0
jupyter==1.0.0
jupyter-client==5.2.2
jupyter-console==5.2.0
jupyter-core==4.4.0
jupyter-http-over-ws==0.0.7
jwt==0.6.1
Keras==2.3.1
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.2
kiwisolver==1.0.1
lazy-object-proxy==1.3.1
lru-dict==1.1.6
Markdown==3.3.3
MarkupSafe==1.1.1
matplotlib==2.2.0rc1
mccabe==0.6.1
memory-profiler==0.55.0
mistune==0.8.3
monotonic==1.5
more-itertools==7.2.0
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pyOpenSSL==19.1.0
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pytest-benchmark==3.2.2
pytest-cov==2.8.1
pytest-mock==1.12.1
pytest-shard==0.1.1
python-dateutil==2.6.1
python-Levenshtein==0.12.0
python-utils==2.3.0
python-xmp-toolkit==2.0.1
pytools==2018.1
pytz==2018.3
PyWavelets==1.1.1
PyYAML==4.2b4
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qtconsole==4.3.1
regex==2019.11.1
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requests==2.20.1
requests-oauthlib==1.3.0
retrying==1.3.3
rsa==4.0
scandir==1.7
scikit-image==0.14.2
scikit-learn==0.20.3
scipy==1.2.1
seaborn==0.9.0
Send2Trash==1.5.0
simplegeneric==0.8.1
singledispatch==3.4.0.3
six==1.11.0
sklearn==0.0
smmap==3.0.1
SQLAlchemy==1.3.10
sqlparse==0.3.0
statistics==1.0.3.5
subprocess32==3.5.0
tabulate==0.8.5
tensorboard==1.14.0
tensorboard-plugin-wit==1.7.0
tensorflow==1.14.0
tensorflow-estimator==1.14.0
termcolor==1.1.0
terminado==0.8.1
testpath==0.3.1
threadpoolctl==2.1.0
TogglPy==0.1.1
toml==0.10.0
toolz==0.11.1
torch==1.3.0
tornado==5.0
tqdm==4.38.0
traitlets==4.3.2
trash-cli==0.17.1.14
typed-ast==1.4.1
typing-extensions==3.7.4.1
umap==0.1.1
urllib3==1.24.2
virtualenv==15.1.0
wcwidth==0.1.7
webencodings==0.5.1
Werkzeug==0.15.3
wget==3.2
widgetsnbextension==3.1.4
wrapt==1.11.2
zipp==0.6.0
/Users/dender-mac/.pyenv/shims/python3

Python 3
========
Path:    /Users/dender-mac/.pyenv/shims/python3
Version: Python 3.7.3
absl-py==0.7.0
appdirs==1.4.3
appnope==0.1.0
ascii-art==0.1.0
aspy.refactor-imports==1.1.0
astor==0.8.1
astroid==1.6.1
astunparse==1.6.3
attrs==19.3.0
autoenv==1.0.0
backports-abc==0.5
backports.functools-lru-cache==1.5
backports.shutil-get-terminal-size==1.0.0
bcrypt==3.2.0
bibtexparser==1.1.0
bleach==1.5.0
bokeh==1.0.2
cached-property==1.5.1
cachetools==4.1.1
certifi==2018.4.16
cffi==1.11.5
chardet==3.0.4
checksumdir==1.0.5
Click==7.0
cloudpickle==1.6.0
configparser==3.5.0
coverage==4.5.1
cpplint==1.3.0
cryptography==2.9.2
cycler==0.10.0
dash==0.39.0
dash-core-components==0.44.0
dash-html-components==0.14.0
dash-renderer==0.20.0
dash-table==3.6.0
dask==2.30.0
dataclasses==0.6
decorator==4.3.0
detect-secrets==0.12.4
dm-sonnet==1.23
docutils==0.14
editdistance==0.3.1
entrypoints==0.2.3
enum34==1.1.6
fasteners==0.15
flaky==3.6.1
Flask==1.0.2
Flask-Compress==1.4.0
Flask-Cors==3.0.6
Flask-SQLAlchemy==2.4.0
fs==2.4.8
fs.sshfs==0.11.1
funcsigs==1.0.2
future==0.18.2
futures==3.1.1
fuzzywuzzy==0.16.0
gast==0.2.2
gitdb==4.0.2
GitPython==3.1.0
google-auth==1.23.0
google-auth-oauthlib==0.4.2
google-pasta==0.2.0
GPUtil==1.4.0
graph-nets==1.0.2
graphviz==0.9
grpcio==1.18.0
grpcio-tools==1.18.0
gspread==3.1.0
gspread-dataframe==3.0.3
gym==0.10.5
h5py==2.9.0
html5lib==0.9999999
httplib2==0.14.0
humanize==0.5.1
idna==2.6
importlib-metadata==0.23
inotify==0.2.10
ipaddress==1.0.23
ipdb==0.11
ipykernel==4.8.2
ipython==5.7.0
ipython-genutils==0.2.0
ipywidgets==7.1.2
isort==4.3.4
itsdangerous==1.1.0
jedi==0.11.1
Jinja2==2.10.1
joblib==0.17.0
jsonschema==2.6.0
jupyter==1.0.0
jupyter-client==5.2.2
jupyter-console==5.2.0
jupyter-core==4.4.0
jupyter-http-over-ws==0.0.7
jwt==0.6.1
Keras==2.3.1
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.2
kiwisolver==1.0.1
lazy-object-proxy==1.3.1
lru-dict==1.1.6
Markdown==3.3.3
MarkupSafe==1.1.1
matplotlib==2.2.0rc1
mccabe==0.6.1
memory-profiler==0.55.0
mistune==0.8.3
monotonic==1.5
more-itertools==7.2.0
mypy-extensions==0.4.3
mysqlclient==1.4.2.post1
nbconvert==5.3.1
nbformat==4.4.0
networkx==2.2
nose==1.3.7
notebook==5.7.8
numpy==1.16.4
oauth2client==4.1.3
oauthlib==3.1.0
opt-einsum==3.3.0
packaging==19.2
pandas==0.24.1
pandas-bokeh==0.0.2
pandocfilters==1.4.2
paramiko==2.6.0
parso==0.1.1
pathlib==1.0.1
pathlib2==2.3.2
pathspec==0.7.0
pexpect==4.4.0
pickleshare==0.7.4
Pillow==8.0.1
plotly==3.7.0
pluggy==0.13.0
ply==3.11
portpicker==1.3.1
prettytable==0.7.2
progressbar2==3.37.1
prometheus-client==0.6.0
prompt-toolkit==1.0.15
property-cached==1.6.3
protobuf==3.6.1
psutil==5.4.5
psycopg2-binary==2.8.3
ptvsd==4.3.2
ptyprocess==0.5.2
py==1.5.2
py-cpuinfo==3.3.0
pyasn1==0.4.7
pyasn1-modules==0.2.7
pybind11==2.4.2
pycparser==2.17
pycparserext==2016.2
pydot==1.4.1
pyfiglet==0.8.post1
PyGithub==1.39
pyglet==1.5.10
Pygments==2.2.0
PyJWT==1.7.1
pylint==1.8.2
PyNaCl==1.4.0
pyopencl==2018.2.5
pyOpenSSL==19.1.0
pyparsing==2.2.0
pytest==5.3.1
pytest-benchmark==3.2.2
pytest-cov==2.8.1
pytest-mock==1.12.1
pytest-shard==0.1.1
python-dateutil==2.6.1
python-Levenshtein==0.12.0
python-utils==2.3.0
python-xmp-toolkit==2.0.1
pytools==2018.1
pytz==2018.3
PyWavelets==1.1.1
PyYAML==4.2b4
pyzmq==19.0.1
qtconsole==4.3.1
regex==2019.11.1
reorder-python-imports==1.9.0
requests==2.20.1
requests-oauthlib==1.3.0
retrying==1.3.3
rsa==4.0
scandir==1.7
scikit-image==0.14.2
scikit-learn==0.20.3
scipy==1.2.1
seaborn==0.9.0
Send2Trash==1.5.0
simplegeneric==0.8.1
singledispatch==3.4.0.3
six==1.11.0
sklearn==0.0
smmap==3.0.1
SQLAlchemy==1.3.10
sqlparse==0.3.0
statistics==1.0.3.5
subprocess32==3.5.0
tabulate==0.8.5
tensorboard==1.14.0
tensorboard-plugin-wit==1.7.0
tensorflow==1.14.0
tensorflow-estimator==1.14.0
termcolor==1.1.0
terminado==0.8.1
testpath==0.3.1
threadpoolctl==2.1.0
TogglPy==0.1.1
toml==0.10.0
toolz==0.11.1
torch==1.3.0
tornado==5.0
tqdm==4.38.0
traitlets==4.3.2
trash-cli==0.17.1.14
typed-ast==1.4.1
typing-extensions==3.7.4.1
umap==0.1.1
urllib3==1.24.2
virtualenv==15.1.0
wcwidth==0.1.7
webencodings==0.5.1
Werkzeug==0.15.3
wget==3.2
widgetsnbextension==3.1.4
wrapt==1.11.2
zipp==0.6.0

@ChrisCummins
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Owner

ChrisCummins commented Dec 4, 2020 •
edited
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Hi @Dender46, I'm sorry that I haven't got back to you yet, I've been extremely busy.

The good news is that I have a workaround - basically, we can ignore the python dependencies with bazel and just use pip to manage them. This solves the spurious build errors like the one you are experiencing. It'll take a day or two to implement, but might not be for a while yet - I'm getting married tomorrow so will be offline for a week or two :)

Cheers,
Chris

@Dender46
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Dender46 commented Dec 7, 2020

Hey @ChrisCummins, congrats on your wedding! ❤️ 🥳 Hope you have a lovely honeymoon and few weeks off :)
As I understood correctly, you will solve this issue after vacation and notify, right? I am in no rush, so don't worry, have a nice rest :)

Congrats again!
Dmitry

@Dender46
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Dender46 commented Jan 5, 2021

Hello @ChrisCummins! Happy holidays, hope you had a great time and happy New Year! How is it going? Have you been able to fix the problem? I'm currently too busy to fix it myself even if I knew how to do it, so I would highly appreciate your help.

Cheers,
Dmitry

@ChrisCummins
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Owner

Hi Dimitry, happy new year to you too :) Yes sorry about this, I have a fix, let me implement it tonight and get back to you. FWIW @fivosts has kindly volunteered to take over maintaining this project since I don't have the time to work on it these days, and he has done a great job in rewriting the build system to be a bit more user friendly. @fivosts , is that ready to merge?

Cheers,
Chris

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