CoL of September 2021: tests

[yroskov]

Task: update Species Files in the CoL of September via TaxonWorks

(For attention of @LocoDelAssembly, @mju, @redewalt, @hhopkins77)

Data location
Shall we take datasets of 2021-08-20 from https://sandcastle.taxonworks.org/ ?

• yes
• no.
  Seems, @gdower will generate exports from his local machine using that dump.

List of SFs to go

• only 8 checklists approved in July 2021: Assessment of Species Files exported from TaxonWorks  #85 (comment)
  or
• all SF files currently used in CoL

Metadata
Recently updated YAML files are in @gdower hands. (YAMLs for all or for 8 checklists?)

[hhopkins77]

FYI: YAML updates to the 8 SFs that I am associated with recently received from Geoff. Corrections needed in three of them (which I have passed on to Geoff), so they are not yet ready/correct. Best, Heidi

…

On Fri, Aug 27, 2021 at 1:04 PM yroskov ***@***.***> wrote: *Task: update Species Files in the CoL of September via TaxonWorks* (For attention of @LocoDelAssembly <https://github.com/LocoDelAssembly>, @mju <https://github.com/mju>, @redewalt <https://github.com/redewalt>, @hhopkins77 <https://github.com/hhopkins77>) *Data location* Shall we take datasets of 2021-08-20 from https://sandcastle.taxonworks.org/ ? - yes - no *List of SFs to go* - only 8 checklists approved in July 2021: #85 (comment) <#85 (comment)> or - all SF files currently used in CoL *Metadata* Recently updated YAML files are in @gdower <https://github.com/gdower> hands. (for all or for 8 checklists?) — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#151>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AOXBKTUWGE4MO4EHBSYXDQTT67AQZANCNFSM5C5XDIRQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

-- Heidi Hopkins, PhD "She is not what you would call refined. She is not what you would call unrefined. She is the type of woman who would keep a parrot." ~Mark Twain

[yroskov]

Other arrivals for CoL of September:

• ITIS of 2021-08-27; imported by @gdower 2021-09-01; empty metadata! = fixed; sectors checked, added; synced 2021-09-03
• WoRMS of 2021-09-01; imported by @gdower 2021-09-01; some checklists have export date as 2021-08-01 - see Potential importer download cache problem backend#1036 (comment) = fixed; synced 2021-09-02
• Scarabs of 2021-09-01; imported by @gdower 2021-09-01; no issues; synced 2021-09-03

Preview export 2021-09-03

[yroskov]

Systema Dipterorum: see problems with incorrect placement of species in genera due to use of identical subgenera in SD binomials: #127 (comment) and gbif/checklistbank#187 and CatalogueOfLife/backend#1052

@mdoering fixed.

Synced 2021-09-14.

[yroskov]

Preview of 2021-09-07: tests of 2021-09-08, 09

ITIS, WoRMS, Scarabs are OK.

Systema Dipterorum: "sync software" need to be fixed. Integrity of subgenera uniqueness need to be improved in Systema Dipterorum (Neal is aware of the problem).

[yroskov]

Species Files progress in CoL assembly.

Data of 2021-08-20 taken from local machine http://10.194.234.20:3000/

GSD name	CoLDP export	Importred, date	Imported, spp	Sector	Metadata	Classification	Report
SF Cockroach	2021-09-09: exported entire order Blattodea	2021-09-16	?	epifamilies Blattoidae & Cryptocercoidae		accepted spp without genus blocked	#161
SF Dermaptera	2021-09-09	2021-09-14	1942	order Dermaptera		? suborder NotAssigned (empty) infraorder NotAssigned (empty)	#155
SF Embioptera	2021-09-09	2021-09-15	441	order Embioptera		ok	#156
SF Grylloblattodea	2021-09-09	2021-09-15	584	order Grylloblattodea		? suborder Blattogryllopterida is empty; all other taxa placed in suborder NotAssigned	#157
SF Mantophasmatodea	2021-09-09	2021-09-15	27	order Mantophasmatodea		ok	#159
SF Plecoptera	2021-09-09	2021-09-15	4282	order Plecoptera		ok	#158
SF Psocodea	2021-09-09	2021-09-15	11171	order Psocodea		ok	#160
SF Zoraptera	2021-09-09	2021-09-13	62	order Zoraptera		? family Zorotypidae - subfamily NotAssigned (empty node)	#154