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v0.3.0 2017-06-21 Lyon
----------------------
- Compilation via jbuilder
- more docker images and wrappers
- various bug fixes
v0.2.0 2017-05-10 Lyon
----------------------
Major rewrite:
- new execution engine
+ generic notion of task graph (DAG)
+ compilation of workflow representation to a task DAG
+ logging facilities
+ transparent execution of commands through docker container
+ removal of intermediate targets during execution
+ notion of precious workflow (that should be kept no matter what)
- call of regular ocaml function as new type of workflow
- applicative term to express an action that should be performed after a
set of workflows has been successfully executed
- text logging
- logging as HTML report
- added a collection of Dockerfile scripts
- new bioinfomatics wrappers (many contributed by Sylvere Bastien)
and many bug fixes.
v0.1.0 2016-05-19 Lyon
----------------------
Many minor changes in API.
Installation scripts for tools are no longer considered part of
analysis workflow. Installing programs should be dealt with outside
bistro.
Features:
- heredoc for shell EDSL
- new np and mem tokens for scripts, as a way to use only the
resources that were allocated to a run
Bug fixes:
- bistro execution hangs on utop (f4f932f)
- don't save workflow in database statistics, just its id (issue #4)
v0.0.0 2016-01-21 Lyon
----------------------
First release on OPAM