python-package.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: Build and Test

on:
  push:
    branches: [ "main", "ugw" ]
    tags:
    - "*"
  pull_request:
    branches: [ "main" ]

jobs:
  # build_wheels_windows:
  #   runs-on: windows-latest
  #   strategy:
  #     fail-fast: true
  #   steps:
  #     - name: Check out git repo on windows.
  #       uses: actions/checkout@v4
  #     - name: Set up Python
  #       uses: actions/setup-python@v5
  #       with:
  #           python-version: "3.12"
  #     - name: Install dependencies
  #       run: |
  #         Add-Content $env:GITHUB_PATH "C:\\msys64\\usr\\bin"
  #         Add-Content $env:GITHUB_PATH "C:\\msys64\\mingw64\\bin"
  #         python -m pip install wheel
  #         python -m pip install --upgrade pip
  #     - name: Build wheels
  #       run: |
  #         pacman -S mingw-w64-x86_64-winpthreads
  #         pacman -S mingw-w64-x86_64-winpthreads-git


      # - uses: actions/upload-artifact@v4
      #   with:
      #     name: cibw-wheels-${{ matrix.platform }}-${{ strategy.job-index }}
      #     path: ./wheelhouse/*.whl

  build_wheels:
    runs-on: ${{ matrix.platform }}
    strategy:
      fail-fast: false
      matrix:
        platform: [macos-latest, macos-13, macos-14, ubuntu-latest]
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python
      uses: actions/setup-python@v5
      with:
          python-version: "3.12"
    - name: Install dependencies
      run: |
        python -m pip install wheel
        python -m pip install --upgrade pip
        python -m pip install flake8 pytest pytest-cov
        python -m pip install cibuildwheel==2.20.0
        pip install -r requirements.txt
    - name: Make sure MinGW compiler is available in path
      if: matrix.os == 'windows-latest'
      run: |
          pacman -S mingw-w64-x86_64-winpthreads
          pacman -S mingw-w64-x86_64-winpthreads-git
    - name: Build wheels
      run: python -m cibuildwheel --output-dir wheelhouse
      env:
       CC: "gcc"
       CIBW_SKIP:
        pp*
        cp*-manylinux_i686
        cp*-musllinux_i686
        cp313-*
    - uses: actions/upload-artifact@v4
      with:
        name: cibw-wheels-${{ matrix.platform }}-${{ strategy.job-index }}
        path: ./wheelhouse/*.whl

  make_sdist:
    name: Make SDist
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0  # Optional, use if you use setuptools_scm
        submodules: true  # Optional, use if you have submodules

    - name: Build SDist
      run: pipx run build --sdist

    - uses: actions/upload-artifact@v4
      with:
        name: cibw-sdist
        path: dist/*.tar.gz

  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.10"]

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v3
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install wheel
        python -m pip install --upgrade pip
        python -m pip install flake8 pytest pytest-cov cython numpy
        python setup.py build_ext --inplace
        # pip install -r requirements.txt
    - name: Install CAJAL
      run: |
        python -m pip install .[vis]
    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test with pytest
      run: |
        pytest --cov src/ tests/
    - name: Upload coverage reports to Codecov
      uses: codecov/codecov-action@v3

  release:
    needs: build_wheels
    runs-on: ubuntu-latest
    if: startsWith(github.ref, 'refs/tags/v') || (github.event_name == 'release' && github.event.action == 'published')
    steps:
    - name: Upload Release Asset
      uses: softprops/action-gh-release@v2.0.8
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      with:
        files: |
          ./wheelhouse/*.whl
          dist/*.tar.gz

  upload_all:
    needs: [build_wheels, make_sdist]
    environment: pypi
    permissions:
      id-token: write
    runs-on: ubuntu-latest
    if: startsWith(github.ref, 'refs/tags/v') || (github.event_name == 'release' && github.event.action == 'published')
    steps:
    - uses: actions/download-artifact@v4
      with:
        pattern: cibw-*
        path: dist
        merge-multiple: true

    - uses: pypa/gh-action-pypi-publish@release/v1