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PDFalignMT.m
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PDFalignMT.m
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function [TC] = PDFalignMT(datapath,opt,type,flag,MS)
inf = load([datapath sprintf('N%s.mat',type)]);
MST = inf.info;
clear info inf
inf = load([datapath sprintf('%s%s.mat',opt,type)]);
MT = inf.info;
clear info inf
if opt == 'S'
inf = load([datapath sprintf('%s%s.mat','N',type)]);
N = inf.info;
for i = 1:size(N,2)
for j = 1:size(N(i).xr,2)
MT(i).df(:,j) = MT(i).xr(j).firing(:,N(i).pt(j));
end
end
end
if MS == 1
MT(7) = [];
MT(4) = [];
MT(1) = [];
MST(7) = [];
MST(4) = [];
MST(1) = [];
end
dir = (0:45:315);
TC = [];
for i = 1:size(MST,2)
for j = 1:size(MST(i).df,2)
[rMST cMST] = max(MST(i).df(:,j));
dirnew = dir - dir(cMST);
[rLB cLB] = find(dirnew < -180);
ctlLB = size(dirnew(cLB),2);
[rUB cUB] = find(dirnew > 135);
ctlUB = size(dirnew(cUB),2);
if ctlLB > 0
TC(i).MST.bMT(:,j) = circshift(MT(i).df(:,j),-ctlLB);
elseif ctlUB > 0
TC(i).MST.bMT(:,j) = circshift(MT(i).df(:,j),ctlUB);
elseif ctlLB == 0 && ctlUB == 0
TC(i).MST.bMT(:,j) = circshift(MT(i).df(:,j),0);
end
TC(i).MST.MSTidx(:,j) = cMST;
TC(i).MST.fr(:,j) = MST(i).FR(j,1);
end
% TC(i).MST.MST = MST(i).df;
TC(i).MST.MTmean = mean(TC(i).MST.bMT,2);
TC(i).MST.dir = -180:45:135;
TC(i).MST.err = std(TC(i).MST.bMT,[],2) / sqrt(size(TC(i).MST.bMT,2));
if flag == 1
if ceil(j/2) == 1
r = 1; c = 2;
else
r = ceil(j/2);
c = r;
end
figure
for w = 1:j
subplot(r,c,w)
plot(TC(i).MST(w).dir,TC(i).MST(w).MST,'k','LineWidth',0.5)
hold on
plot(TC(i).MST(w).dir,TC(i).MST(w).MTmean,'b','LineWidth',1.5)
xlim([min(TC(i).MST(w).dir) max(TC(i).MST(w).dir)])
end
title(sprintf('Mean MT TC^{%s}',type))
xlabel 'Diff from MST PD^o'
ylabel 'Firing Rate (Hz)'
end
end