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Add pretty printers for common biological file formats #34

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kMutagene opened this issue Dec 1, 2018 · 1 comment
Open
3 of 6 tasks

Add pretty printers for common biological file formats #34

kMutagene opened this issue Dec 1, 2018 · 1 comment
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good first issue project-all Issues regarding all projects up-for-grabs
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@kMutagene
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kMutagene commented Dec 1, 2018 •
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As analyzing biological data with BioFSharp involves a lot of scripting, optional pretty printers help a lot when looking at results directly in the fsi window. This should be especially easy to add for parsing libraries that can already write the correct file format. A basic pretty printer for biocollections is already impelemented.
Here are some formats from the top of my head, feel free to add more

  • BioCollections (BioList,BioArray,BioSeq)
  • Clustal
  • GFF
  • FastA/Q
  • GeneBank
  • Alignments
@kMutagene kMutagene added project-all Issues regarding all projects up-for-grabs labels Dec 1, 2018
kMutagene referenced this issue Dec 28, 2018
@kMutagene
Move FSIPrinters to BioFSharp.IO
caa043a 
- Improve Clustal/ClustalOWrapper docs
- Add Clustal pretty printer
- Add PrettyPrinter docs
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GFF added via eaaa59f

@kMutagene kMutagene pinned this issue Jul 25, 2019
@kMutagene kMutagene added this to the Backlog milestone Feb 20, 2020
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