diff --git a/.github/workflows/run_tests.yaml b/.github/workflows/run_tests.yaml
index d2222fb2..d79e6940 100644
--- a/.github/workflows/run_tests.yaml
+++ b/.github/workflows/run_tests.yaml
@@ -10,47 +10,14 @@ on:
 
 jobs:
   
-  Run-Tests-Ubuntu:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ["3.10", "3.11"]
-
-    steps:
-
-      - name: Checkout pytket-mbqc
-        uses: actions/checkout@v4
-
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
-        with:
-          python-version: ${{ matrix.python-version }}
-          cache: 'pip'
-
-      - name: Install pytket-mbqc
-        run: pip install pytket-mbqc-py/
+  Run-Tests:
 
-      - name: Run Tests
-        run: pytest --cov-report term-missing:skip-covered --cov=pytket-mbqc-py/pytket_mbqc_py/ pytket-mbqc-py/tests/ --durations=10
-
-      - name: Type Check
-        run: mypy pytket-mbqc-py/pytket_mbqc_py/ --warn-unused-ignores
-
-      - name: Lint Check
-        uses: chartboost/ruff-action@v1
-        with:
-          args: check
-
-      - name: Format Check
-        uses: chartboost/ruff-action@v1
-        with:
-          args: format --check
-
-  Run-Tests-Mac:
-    runs-on: macos
     strategy:
       matrix:
         python-version: ["3.10", "3.11"]
+        os: [ubuntu-latest, macos-latest]
+
+    runs-on: ${{ matrix.os }}
 
     steps:
 
@@ -58,7 +25,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
           cache: 'pip'
@@ -73,11 +40,7 @@ jobs:
         run: mypy pytket-mbqc-py/pytket_mbqc_py/ --warn-unused-ignores
 
       - name: Lint Check
-        uses: chartboost/ruff-action@v1
-        with:
-          args: check
+        run: ruff check
 
       - name: Format Check
-        uses: chartboost/ruff-action@v1
-        with:
-          args: format --check
+        run: ruff format --check
diff --git a/pytket-mbqc-py/poetry.lock b/pytket-mbqc-py/poetry.lock
index cae17172..0c467bd9 100644
--- a/pytket-mbqc-py/poetry.lock
+++ b/pytket-mbqc-py/poetry.lock
@@ -383,13 +383,13 @@ files = [
 
 [[package]]
 name = "comm"
-version = "0.2.1"
+version = "0.2.2"
 description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "comm-0.2.1-py3-none-any.whl", hash = "sha256:87928485c0dfc0e7976fd89fc1e187023cf587e7c353e4a9b417555b44adf021"},
-    {file = "comm-0.2.1.tar.gz", hash = "sha256:0bc91edae1344d39d3661dcbc36937181fdaddb304790458f8b044dbc064b89a"},
+    {file = "comm-0.2.2-py3-none-any.whl", hash = "sha256:e6fb86cb70ff661ee8c9c14e7d36d6de3b4066f1441be4063df9c5009f0a64d3"},
+    {file = "comm-0.2.2.tar.gz", hash = "sha256:3fd7a84065306e07bea1773df6eb8282de51ba82f77c72f9c85716ab11fe980e"},
 ]
 
 [package.dependencies]
@@ -463,63 +463,63 @@ test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"]
 
 [[package]]
 name = "coverage"
-version = "7.4.3"
+version = "7.4.4"
 description = "Code coverage measurement for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
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 docs = ["ipython", "matplotlib", "numpydoc", "sphinx"]
 tests = ["pytest", "pytest-cov", "pytest-xdist"]
 
+[[package]]
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 [[package]]
 name = "debugpy"
 version = "1.8.1"
@@ -705,53 +772,53 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 
 [[package]]
 name = "fonttools"
-version = "4.49.0"
+version = "4.50.0"
 description = "Tools to manipulate font files"
 optional = false
 python-versions = ">=3.8"
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+testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
 
 [[package]]
 name = "iniconfig"
@@ -834,13 +901,13 @@ files = [
 
 [[package]]
 name = "ipykernel"
-version = "6.29.3"
+version = "6.29.4"
 description = "IPython Kernel for Jupyter"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -867,13 +934,13 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio
 
 [[package]]
 name = "ipython"
-version = "8.22.2"
+version = "8.23.0"
 description = "IPython: Productive Interactive Computing"
 optional = false
 python-versions = ">=3.10"
 files = [
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 [package.dependencies]
@@ -887,12 +954,14 @@ prompt-toolkit = ">=3.0.41,<3.1.0"
 pygments = ">=2.4.0"
 stack-data = "*"
 traitlets = ">=5.13.0"
+typing-extensions = {version = "*", markers = "python_version < \"3.12\""}
 
 [package.extras]
-all = ["ipython[black,doc,kernel,nbconvert,nbformat,notebook,parallel,qtconsole,terminal]", "ipython[test,test-extra]"]
+all = ["ipython[black,doc,kernel,matplotlib,nbconvert,nbformat,notebook,parallel,qtconsole]", "ipython[test,test-extra]"]
 black = ["black"]
 doc = ["docrepr", "exceptiongroup", "ipykernel", "ipython[test]", "matplotlib", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "sphinxcontrib-jquery", "stack-data", "typing-extensions"]
 kernel = ["ipykernel"]
+matplotlib = ["matplotlib"]
 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
 notebook = ["ipywidgets", "notebook"]
@@ -1042,13 +1111,13 @@ test = ["codecov", "coverage", "ipykernel (>=6.12)", "ipython", "mypy", "pre-com
 
 [[package]]
 name = "jupyter-core"
-version = "5.7.1"
+version = "5.7.2"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
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 python-versions = ">=3.8"
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 [package.dependencies]
@@ -1058,17 +1127,17 @@ traitlets = ">=5.3"
 
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-test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
+test = ["ipykernel", "pre-commit", "pytest (<8)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-events"
-version = "0.9.0"
+version = "0.10.0"
 description = "Jupyter Event System library"
 optional = false
 python-versions = ">=3.8"
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 [package.dependencies]
@@ -1123,13 +1192,13 @@ test = ["flaky", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-sc
 
 [[package]]
 name = "jupyter-server-terminals"
-version = "0.5.2"
+version = "0.5.3"
 description = "A Jupyter Server Extension Providing Terminals."
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 files = [
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 ]
 
 [package.dependencies]
@@ -1476,13 +1545,13 @@ tests = ["pytest (>=4.6)"]
 
 [[package]]
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-version = "1.27.0"
+version = "1.28.0"
 description = "The Microsoft Authentication Library (MSAL) for Python library enables your app to access the Microsoft Cloud by supporting authentication of users with Microsoft Azure Active Directory accounts (AAD) and Microsoft Accounts (MSA) using industry standard OAuth2 and OpenID Connect."
 optional = false
-python-versions = ">=2.7"
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 [package.dependencies]
@@ -1495,38 +1564,38 @@ broker = ["pymsalruntime (>=0.13.2,<0.15)"]
 
 [[package]]
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+version = "1.9.0"
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 python-versions = ">=3.8"
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 [package.dependencies]
@@ -1588,13 +1657,13 @@ test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-jupyter", "pytest-p
 
 [[package]]
 name = "nbclient"
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 python-versions = ">=3.8.0"
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+    {file = "nbclient-0.10.0-py3-none-any.whl", hash = "sha256:f13e3529332a1f1f81d82a53210322476a168bb7090a0289c795fe9cc11c9d3f"},
+    {file = "nbclient-0.10.0.tar.gz", hash = "sha256:4b3f1b7dba531e498449c4db4f53da339c91d449dc11e9af3a43b4eb5c5abb09"},
 ]
 
 [package.dependencies]
@@ -1606,17 +1675,17 @@ traitlets = ">=5.4"
 [package.extras]
 dev = ["pre-commit"]
 docs = ["autodoc-traits", "mock", "moto", "myst-parser", "nbclient[test]", "sphinx (>=1.7)", "sphinx-book-theme", "sphinxcontrib-spelling"]
-test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest (>=7.0)", "pytest-asyncio", "pytest-cov (>=4.0)", "testpath", "xmltodict"]
+test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest (>=7.0,<8)", "pytest-asyncio", "pytest-cov (>=4.0)", "testpath", "xmltodict"]
 
 [[package]]
 name = "nbconvert"
-version = "7.16.1"
+version = "7.16.3"
 description = "Converting Jupyter Notebooks (.ipynb files) to other formats.  Output formats include asciidoc, html, latex, markdown, pdf, py, rst, script.  nbconvert can be used both as a Python library (`import nbconvert`) or as a command line tool (invoked as `jupyter nbconvert ...`)."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "nbconvert-7.16.1-py3-none-any.whl", hash = "sha256:3188727dffadfdc9c6a1c7250729063d7bc78b355ad7aa023138afa030d1cd07"},
-    {file = "nbconvert-7.16.1.tar.gz", hash = "sha256:e79e6a074f49ba3ed29428ed86487bf51509d9aab613bd8522ac08f6d28fd7fd"},
+    {file = "nbconvert-7.16.3-py3-none-any.whl", hash = "sha256:ddeff14beeeedf3dd0bc506623e41e4507e551736de59df69a91f86700292b3b"},
+    {file = "nbconvert-7.16.3.tar.gz", hash = "sha256:a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142"},
 ]
 
 [package.dependencies]
@@ -1642,18 +1711,18 @@ docs = ["ipykernel", "ipython", "myst-parser", "nbsphinx (>=0.2.12)", "pydata-sp
 qtpdf = ["nbconvert[qtpng]"]
 qtpng = ["pyqtwebengine (>=5.15)"]
 serve = ["tornado (>=6.1)"]
-test = ["flaky", "ipykernel", "ipywidgets (>=7.5)", "pytest"]
+test = ["flaky", "ipykernel", "ipywidgets (>=7.5)", "pytest (>=7)"]
 webpdf = ["playwright"]
 
 [[package]]
 name = "nbformat"
-version = "5.9.2"
+version = "5.10.3"
 description = "The Jupyter Notebook format"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "nbformat-5.9.2-py3-none-any.whl", hash = "sha256:1c5172d786a41b82bcfd0c23f9e6b6f072e8fb49c39250219e4acfff1efe89e9"},
-    {file = "nbformat-5.9.2.tar.gz", hash = "sha256:5f98b5ba1997dff175e77e0c17d5c10a96eaed2cbd1de3533d1fc35d5e111192"},
+    {file = "nbformat-5.10.3-py3-none-any.whl", hash = "sha256:d9476ca28676799af85385f409b49d95e199951477a159a576ef2a675151e5e8"},
+    {file = "nbformat-5.10.3.tar.gz", hash = "sha256:60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685"},
 ]
 
 [package.dependencies]
@@ -1804,13 +1873,13 @@ files = [
 
 [[package]]
 name = "packaging"
-version = "23.2"
+version = "24.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "packaging-23.2-py3-none-any.whl", hash = "sha256:8c491190033a9af7e1d931d0b5dacc2ef47509b34dd0de67ed209b5203fc88c7"},
-    {file = "packaging-23.2.tar.gz", hash = "sha256:048fb0e9405036518eaaf48a55953c750c11e1a1b68e0dd1a9d62ed0c092cfc5"},
+    {file = "packaging-24.0-py3-none-any.whl", hash = "sha256:2ddfb553fdf02fb784c234c7ba6ccc288296ceabec964ad2eae3777778130bc5"},
+    {file = "packaging-24.0.tar.gz", hash = "sha256:eb82c5e3e56209074766e6885bb04b8c38a0c015d0a30036ebe7ece34c9989e9"},
 ]
 
 [[package]]
@@ -1855,13 +1924,13 @@ ptyprocess = ">=0.5"
 
 [[package]]
 name = "phir"
-version = "0.3.0"
+version = "0.3.2"
 description = "A data model and validation tool for PHIR (PECOS High-level Intermediate Representation)."
 optional = false
 python-versions = ">=3.10"
 files = [
-    {file = "phir-0.3.0-py3-none-any.whl", hash = "sha256:f672afb878b02afbc688d904a04a653ed098c206a913fcd9926dd545bb7e62fb"},
-    {file = "phir-0.3.0.tar.gz", hash = "sha256:ad4eabad32f615d056e35ca89f3ce0298700b3e2ab7a9bb66ac56fc25dc14726"},
+    {file = "phir-0.3.2-py3-none-any.whl", hash = "sha256:f5990619ceb6d7349a1d7ad485bb051668b79c8f66d4f5a1885f590ef1babddd"},
+    {file = "phir-0.3.2.tar.gz", hash = "sha256:9b14a45d72b27f9471a9df35dd9e74bbc435884f473f6d327106fc253ad8d035"},
 ]
 
 [package.dependencies]
@@ -2103,26 +2172,40 @@ files = [
     {file = "py-1.11.0.tar.gz", hash = "sha256:51c75c4126074b472f746a24399ad32f6053d1b34b68d2fa41e558e6f4a98719"},
 ]
 
+[[package]]
+name = "pybind11"
+version = "2.12.0"
+description = "Seamless operability between C++11 and Python"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "pybind11-2.12.0-py3-none-any.whl", hash = "sha256:df8d60b94f9e714d81013db233393d430ebf9f3551642b82291cf1b14d1afdbd"},
+    {file = "pybind11-2.12.0.tar.gz", hash = "sha256:5e3c557a84b06b969247630407fc4d985bed157b4253b13153b8e8e165e0c3dc"},
+]
+
+[package.extras]
+global = ["pybind11-global (==2.12.0)"]
+
 [[package]]
 name = "pycparser"
-version = "2.21"
+version = "2.22"
 description = "C parser in Python"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=3.8"
 files = [
-    {file = "pycparser-2.21-py2.py3-none-any.whl", hash = "sha256:8ee45429555515e1f6b185e78100aea234072576aa43ab53aefcae078162fca9"},
-    {file = "pycparser-2.21.tar.gz", hash = "sha256:e644fdec12f7872f86c58ff790da456218b10f863970249516d60a5eaca77206"},
+    {file = "pycparser-2.22-py3-none-any.whl", hash = "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc"},
+    {file = "pycparser-2.22.tar.gz", hash = "sha256:491c8be9c040f5390f5bf44a5b07752bd07f56edf992381b05c701439eec10f6"},
 ]
 
 [[package]]
 name = "pydantic"
-version = "2.6.3"
+version = "2.6.4"
 description = "Data validation using Python type hints"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pydantic-2.6.3-py3-none-any.whl", hash = "sha256:72c6034df47f46ccdf81869fddb81aade68056003900a8724a4f160700016a2a"},
-    {file = "pydantic-2.6.3.tar.gz", hash = "sha256:e07805c4c7f5c6826e33a1d4c9d47950d7eaf34868e2690f8594d2e30241f11f"},
+    {file = "pydantic-2.6.4-py3-none-any.whl", hash = "sha256:cc46fce86607580867bdc3361ad462bab9c222ef042d3da86f2fb333e1d916c5"},
+    {file = "pydantic-2.6.4.tar.gz", hash = "sha256:b1704e0847db01817624a6b86766967f552dd9dbf3afba4004409f908dcc84e6"},
 ]
 
 [package.dependencies]
@@ -2261,27 +2344,43 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 
 [[package]]
 name = "pyparsing"
-version = "3.1.1"
+version = "3.1.2"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 optional = false
 python-versions = ">=3.6.8"
 files = [
-    {file = "pyparsing-3.1.1-py3-none-any.whl", hash = "sha256:32c7c0b711493c72ff18a981d24f28aaf9c1fb7ed5e9667c9e84e3db623bdbfb"},
-    {file = "pyparsing-3.1.1.tar.gz", hash = "sha256:ede28a1a32462f5a9705e07aea48001a08f7cf81a021585011deba701581a0db"},
+    {file = "pyparsing-3.1.2-py3-none-any.whl", hash = "sha256:f9db75911801ed778fe61bb643079ff86601aca99fcae6345aa67292038fb742"},
+    {file = "pyparsing-3.1.2.tar.gz", hash = "sha256:a1bac0ce561155ecc3ed78ca94d3c9378656ad4c94c1270de543f621420f94ad"},
 ]
 
 [package.extras]
 diagrams = ["jinja2", "railroad-diagrams"]
 
+[[package]]
+name = "pyqir"
+version = "0.10.0"
+description = "PyQIR parses, generates and evaluates the Quantum Intermediate Representation."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "pyqir-0.10.0-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:b2fd7bb4bd45fa601ac92099c4e82d8f02e092a44d413d1dad7fa555fafa40b8"},
+    {file = "pyqir-0.10.0-cp38-abi3-macosx_11_0_arm64.whl", hash = "sha256:cd4ea16986dd4f776906b9364095d9480f411ba16fec9c558e388ca0be8bfcbc"},
+    {file = "pyqir-0.10.0-cp38-abi3-manylinux_2_31_x86_64.whl", hash = "sha256:a862778ff8b40ec4267627605766bbff53d5ccf1b87619dd5bacc8beec0d1cc3"},
+    {file = "pyqir-0.10.0-cp38-abi3-win_amd64.whl", hash = "sha256:c43bcb1a6c874312e89402405458dc544215ce9ea161a8e63944a2c03462b97e"},
+]
+
+[package.extras]
+test = ["pytest (>=7.2.0,<7.3.0)"]
+
 [[package]]
 name = "pytest"
-version = "8.0.2"
+version = "8.1.1"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pytest-8.0.2-py3-none-any.whl", hash = "sha256:edfaaef32ce5172d5466b5127b42e0d6d35ebbe4453f0e3505d96afd93f6b096"},
-    {file = "pytest-8.0.2.tar.gz", hash = "sha256:d4051d623a2e0b7e51960ba963193b09ce6daeb9759a451844a21e4ddedfc1bd"},
+    {file = "pytest-8.1.1-py3-none-any.whl", hash = "sha256:2a8386cfc11fa9d2c50ee7b2a57e7d898ef90470a7a34c4b949ff59662bb78b7"},
+    {file = "pytest-8.1.1.tar.gz", hash = "sha256:ac978141a75948948817d360297b7aae0fcb9d6ff6bc9ec6d514b85d5a65c044"},
 ]
 
 [package.dependencies]
@@ -2289,11 +2388,11 @@ colorama = {version = "*", markers = "sys_platform == \"win32\""}
 exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
 iniconfig = "*"
 packaging = "*"
-pluggy = ">=1.3.0,<2.0"
-tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
+pluggy = ">=1.4,<2.0"
+tomli = {version = ">=1", markers = "python_version < \"3.11\""}
 
 [package.extras]
-testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
+testing = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "pytest-cov"
@@ -2313,6 +2412,21 @@ pytest = ">=4.6"
 [package.extras]
 testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"]
 
+[[package]]
+name = "pytest-parallel"
+version = "0.1.1"
+description = "a pytest plugin for parallel and concurrent testing"
+optional = false
+python-versions = "*"
+files = [
+    {file = "pytest-parallel-0.1.1.tar.gz", hash = "sha256:9aac3fc199a168c0a8559b60249d9eb254de7af58c12cee0310b54d4affdbfab"},
+    {file = "pytest_parallel-0.1.1-py3-none-any.whl", hash = "sha256:9e3703015b0eda52be9e07d2ba3498f09340a56d5c79a39b50f22fc5c38212fe"},
+]
+
+[package.dependencies]
+pytest = ">=3.0.0"
+tblib = "*"
+
 [[package]]
 name = "python-dateutil"
 version = "2.9.0.post0"
@@ -2340,26 +2454,26 @@ files = [
 
 [[package]]
 name = "pytket"
-version = "1.25.0"
+version = "1.26.0"
 description = "Python module for interfacing with the CQC tket library of quantum software"
 optional = false
 python-versions = ">=3.10"
 files = [
-    {file = "pytket-1.25.0-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:3004271220655b6b29bbbfc2077288762da62355765402697f991e87edd8cf2e"},
-    {file = "pytket-1.25.0-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:c9705cf3cbfd6b5fc6b0ead9c34e7dfa0826b2a98a94ab7c83d383057fc748c2"},
-    {file = "pytket-1.25.0-cp310-cp310-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:48add5959e2bf1027de40515233d7ec001f745b703adb1aedd22ee0a3a6d29ac"},
-    {file = "pytket-1.25.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:313565b91a079c05d25fb708caeb20aa6f077bf3988798f66edf19914802016e"},
-    {file = "pytket-1.25.0-cp310-cp310-win_amd64.whl", hash = "sha256:340101ffafcabac43e7b2da2c9a0e389e6daf876c53552e3601a6d1e69758eed"},
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-    {file = "pytket-1.25.0-cp311-cp311-macosx_12_0_x86_64.whl", hash = "sha256:f1d265d05803d7ff51d03fc7bd3a42de66de22e9c9456ce0bdc622b5516122c3"},
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-    {file = "pytket-1.25.0-cp312-cp312-win_amd64.whl", hash = "sha256:c73381645c1b27bb2946707d7b58cf780a04330fc557d089a9bca8c8f466f1ca"},
+    {file = "pytket-1.26.0-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:3ae0763e7de87c40318901cf261ab227ce914755d285ea271328ca0767540347"},
+    {file = "pytket-1.26.0-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:7b617593acba4861fbbc4dbbae35630706e11c2e5c76061bb5beca746aebf710"},
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+    {file = "pytket-1.26.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:cee9e279bc68ab67a46d34ceaed562ad4378b1ae917a3c6d16a7dbdec2d1e264"},
+    {file = "pytket-1.26.0-cp310-cp310-win_amd64.whl", hash = "sha256:003585360ef17ad21b8e4a41baa221e618561d20eb5d26140895054c2f4ec839"},
+    {file = "pytket-1.26.0-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:f68a6f6217429a3653ce5e29021c983742f2256af446d82b3092966c9ea9d153"},
+    {file = "pytket-1.26.0-cp311-cp311-macosx_12_0_x86_64.whl", hash = "sha256:235f30ef0ece889f66edebe3c9a7daf146f6ebdb6e704f41d32908b9eb3c53f9"},
+    {file = "pytket-1.26.0-cp311-cp311-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:d5fc8d2b292a9384bb1cfe9f285d4a15d2cbf593437e235bce01d02647f51db4"},
+    {file = "pytket-1.26.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:b6e5190e067a8179d4f88612f273b0969a83c997eb09dbaeab59d118de43def6"},
+    {file = "pytket-1.26.0-cp311-cp311-win_amd64.whl", hash = "sha256:60048f32a3dc2123346b97227b931c87e4ad2e2d75d13362f83f97de65d62ef8"},
+    {file = "pytket-1.26.0-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:62ee4d4dc642857c24daefc67712ebde86a7bfb1a848411130b390837e626b82"},
+    {file = "pytket-1.26.0-cp312-cp312-macosx_12_0_x86_64.whl", hash = "sha256:2999dc92e2fa8a7587e4d29e1150227c83b36ea528cdf5187de59ea3b68f53af"},
+    {file = "pytket-1.26.0-cp312-cp312-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:293f4e2799d68eb4e858ec6a4441bb5909eb76e6d131032140a6151df6ae5544"},
+    {file = "pytket-1.26.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:873bd961e89dd641ba023cf4f3f2dc0bcc956f417b01b16f8c29ced8953c588a"},
+    {file = "pytket-1.26.0-cp312-cp312-win_amd64.whl", hash = "sha256:fa306cfafe294e829f7be57fe2bee91b94c995a295b8c1c267ed23964b5bab10"},
 ]
 
 [package.dependencies]
@@ -2379,63 +2493,77 @@ zx = ["autoray (>=0.6.1)", "quimb (>=1.5,<2.0)"]
 
 [[package]]
 name = "pytket-pecos"
-version = "0.1.17"
+version = "0.1.22"
 description = "This package enables emulation of pytket circuits using the PECOS emulator."
 optional = false
 python-versions = "*"
 files = [
-    {file = "pytket_pecos-0.1.17-py2.py3-none-any.whl", hash = "sha256:f1a5b7f30851495ca2fe5244d8e80dca0eee442fbc18a22c333a3d8062579d76"},
-    {file = "pytket_pecos-0.1.17.tar.gz", hash = "sha256:c3dc87ce4bfb4c03bc5629370e8fb6d394b5f4eb3322e26c6dd5ab30f4018418"},
+    {file = "pytket_pecos-0.1.22-py2.py3-none-any.whl", hash = "sha256:50521eebd8a7947403a5b1f4961e5f33d494bddede3388406e18db10a978559a"},
+    {file = "pytket_pecos-0.1.22.tar.gz", hash = "sha256:c43e8a7956cd10527b0a332d1a44e53a1054b475a5289cfe4105d627dc178951"},
 ]
 
 [package.dependencies]
-projectq = ">=0.8.0"
-pytket = ">=1.25.0"
-pytket-phir = ">=0.4.4"
-quantum-pecos = ">=0.5.0dev9"
+pytket = ">=1.26.0"
+pytket-phir = ">=0.6.2"
+quantum-pecos = {version = ">=0.5.0dev10", extras = ["simulators", "wasmtime"]}
 
 [[package]]
 name = "pytket-phir"
-version = "0.4.4"
+version = "0.6.2"
 description = "A circuit analyzer and translator from pytket to PHIR"
 optional = false
 python-versions = "<3.13,>=3.10"
 files = [
-    {file = "pytket-phir-0.4.4.tar.gz", hash = "sha256:1e7ba6bf769e1d0a4f91f189daf01ef8d9904afe12208dd89a5b11f83b1d0632"},
-    {file = "pytket_phir-0.4.4-py3-none-any.whl", hash = "sha256:557059c9015079e8d4d0d2fe0f0dbcf778e31f721189b5fb0fb46ca01ebbb60f"},
+    {file = "pytket-phir-0.6.2.tar.gz", hash = "sha256:879f45d1c827fc4a11c396db35c6f111831250699abe9badc4f5fc455a3dd646"},
+    {file = "pytket_phir-0.6.2-py3-none-any.whl", hash = "sha256:98821acb9e91cf3e3750f6797e9aa58c549fcf0356ff3e9bffaaf4e4ef4bece3"},
 ]
 
 [package.dependencies]
-phir = ">=0.3.0"
+phir = ">=0.3.2"
 pytket = ">=1.21.0"
 wasmtime = ">=15.0.0"
 
 [package.extras]
 docs = ["pydata-sphinx-theme", "sphinx"]
-phirc = ["projectq", "quantum-pecos (>=0.5.0.dev8)"]
+phirc = ["projectq", "quantum-pecos (>=0.5.0.dev10)"]
 tests = ["pytest"]
 
+[[package]]
+name = "pytket-qir"
+version = "0.9.0"
+description = "Extension for pytket, providing functions for conversion into to qir"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "pytket_qir-0.9.0-py3-none-any.whl", hash = "sha256:2ecd74db10eb6aaccd9fe7c80635b1d368d1a1f70cdcc5e4a30abf661cff8424"},
+]
+
+[package.dependencies]
+pyqir = "0.10.0"
+pytket = ">=1.26,<2.0"
+
 [[package]]
 name = "pytket-quantinuum"
-version = "0.29.0"
+version = "0.32.0"
 description = "Extension for pytket, providing access to Quantinuum backends"
 optional = false
 python-versions = ">=3.10"
 files = [
-    {file = "pytket_quantinuum-0.29.0-py3-none-any.whl", hash = "sha256:a47724ed7f3d162f9e1121cd1a4e7a7b830204ac8ace6638f10d211177f12c9e"},
+    {file = "pytket_quantinuum-0.32.0-py3-none-any.whl", hash = "sha256:31f6c6482fb24a854a41b2ca8e653a43c02c2a7090c86c17d38ccacfb1409ebb"},
 ]
 
 [package.dependencies]
 msal = ">=1.18,<2.0"
 nest-asyncio = ">=1.2"
 pyjwt = ">=2.4,<3.0"
-pytket = ">=1.24,<2.0"
+pytket = ">=1.26,<2.0"
+pytket-qir = ">=0.9.0,<0.10.0"
 requests = ">=2.2"
 types-requests = "*"
 websockets = ">=7.0"
 
 [package.extras]
-pecos = ["pytket-pecos (>=0.1.13,<0.2.0)"]
+pecos = ["pytket-pecos (>=0.1.21,<0.2.0)"]
 
 [[package]]
 name = "pywin32"
@@ -2624,24 +2752,29 @@ py = {version = "*", markers = "implementation_name == \"pypy\""}
 
 [[package]]
 name = "quantum-pecos"
-version = "0.5.0.dev9"
+version = "0.5.0.dev10"
 description = "PECOS is a library/framework for the evaluation, study, and design of QEC protocols. It also provides the ability to study and evaluate the performance advanced hybrid quantum/classical compute execution models for NISQ algorithms and beyond."
 optional = false
 python-versions = ">=3.10"
 files = [
-    {file = "quantum-pecos-0.5.0.dev9.tar.gz", hash = "sha256:0942102ed0329470706563d676d7dd4ff5c3716fa91010d98763bffe0f32467b"},
-    {file = "quantum_pecos-0.5.0.dev9-py2.py3-none-any.whl", hash = "sha256:baaa729889eefca6402806f49c0a7cd3ab2a4353984474656d6670456c0bdb1d"},
+    {file = "quantum-pecos-0.5.0.dev10.tar.gz", hash = "sha256:96e792833fe929df4703abc0fc0d58e9e43dff1451463dfebf3d23586e875ad1"},
+    {file = "quantum_pecos-0.5.0.dev10-py2.py3-none-any.whl", hash = "sha256:c01a97704430e9759ccf0bfa31764537b7a57ae948aea214e543ef251c7cb0b6"},
 ]
 
 [package.dependencies]
+cython = {version = "*", optional = true, markers = "extra == \"simulators\""}
 matplotlib = ">=2.2.0,<4.0"
 networkx = ">=2.1.0,<3.0"
 numpy = ">=1.15.0,<2.0"
 phir = ">=0.3.0,<0.4.0"
+projectq = {version = ">=0.5.0,<0.9.0", optional = true, markers = "extra == \"simulators\""}
+pybind11 = {version = ">=2.2.3,<3.0", optional = true, markers = "extra == \"simulators\""}
 scipy = ">=1.1.0,<2.0"
+wasmtime = {version = ">=13.0", optional = true, markers = "extra == \"wasmtime\""}
 
 [package.extras]
 all = ["quantum-pecos[simulators]", "quantum-pecos[tests]", "quantum-pecos[visualization]", "quantum-pecos[wasmer]", "quantum-pecos[wasmtime]"]
+cuda = ["cupy (>=10.4.0)", "cuquantum-python (>=23.6.0)"]
 simulators = ["cython", "projectq (>=0.5.0,<0.9.0)", "pybind11 (>=2.2.3,<3.0)"]
 tests = ["pytest (>=5.0.0)"]
 visualization = ["plotly (>=5.9.0,<5.10.0)"]
@@ -2664,13 +2797,13 @@ setuptools = "*"
 
 [[package]]
 name = "referencing"
-version = "0.33.0"
+version = "0.34.0"
 description = "JSON Referencing + Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "referencing-0.33.0-py3-none-any.whl", hash = "sha256:39240f2ecc770258f28b642dd47fd74bc8b02484de54e1882b74b35ebd779bd5"},
-    {file = "referencing-0.33.0.tar.gz", hash = "sha256:c775fedf74bc0f9189c2a3be1c12fd03e8c23f4d371dce795df44e06c5b412f7"},
+    {file = "referencing-0.34.0-py3-none-any.whl", hash = "sha256:d53ae300ceddd3169f1ffa9caf2cb7b769e92657e4fafb23d34b93679116dfd4"},
+    {file = "referencing-0.34.0.tar.gz", hash = "sha256:5773bd84ef41799a5a8ca72dc34590c041eb01bf9aa02632b4a973fb0181a844"},
 ]
 
 [package.dependencies]
@@ -2935,18 +3068,18 @@ win32 = ["pywin32"]
 
 [[package]]
 name = "setuptools"
-version = "69.1.1"
+version = "69.2.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "setuptools-69.1.1-py3-none-any.whl", hash = "sha256:02fa291a0471b3a18b2b2481ed902af520c69e8ae0919c13da936542754b4c56"},
-    {file = "setuptools-69.1.1.tar.gz", hash = "sha256:5c0806c7d9af348e6dd3777b4f4dbb42c7ad85b190104837488eab9a7c945cf8"},
+    {file = "setuptools-69.2.0-py3-none-any.whl", hash = "sha256:c21c49fb1042386df081cb5d86759792ab89efca84cf114889191cd09aacc80c"},
+    {file = "setuptools-69.2.0.tar.gz", hash = "sha256:0ff4183f8f42cd8fa3acea16c45205521a4ef28f73c6391d8a25e92893134f2e"},
 ]
 
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
@@ -3015,15 +3148,26 @@ files = [
 [package.dependencies]
 mpmath = ">=0.19"
 
+[[package]]
+name = "tblib"
+version = "3.0.0"
+description = "Traceback serialization library."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "tblib-3.0.0-py3-none-any.whl", hash = "sha256:80a6c77e59b55e83911e1e607c649836a69c103963c5f28a46cbeef44acf8129"},
+    {file = "tblib-3.0.0.tar.gz", hash = "sha256:93622790a0a29e04f0346458face1e144dc4d32f493714c6c3dff82a4adb77e6"},
+]
+
 [[package]]
 name = "terminado"
-version = "0.18.0"
+version = "0.18.1"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "terminado-0.18.0-py3-none-any.whl", hash = "sha256:87b0d96642d0fe5f5abd7783857b9cab167f221a39ff98e3b9619a788a3c0f2e"},
-    {file = "terminado-0.18.0.tar.gz", hash = "sha256:1ea08a89b835dd1b8c0c900d92848147cef2537243361b2e3f4dc15df9b6fded"},
+    {file = "terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0"},
+    {file = "terminado-0.18.1.tar.gz", hash = "sha256:de09f2c4b85de4765f7714688fff57d3e75bad1f909b589fde880460c753fd2e"},
 ]
 
 [package.dependencies]
@@ -3087,18 +3231,18 @@ files = [
 
 [[package]]
 name = "traitlets"
-version = "5.14.1"
+version = "5.14.2"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "traitlets-5.14.1-py3-none-any.whl", hash = "sha256:2e5a030e6eff91737c643231bfcf04a65b0132078dad75e4936700b213652e74"},
-    {file = "traitlets-5.14.1.tar.gz", hash = "sha256:8585105b371a04b8316a43d5ce29c098575c2e477850b62b848b964f1444527e"},
+    {file = "traitlets-5.14.2-py3-none-any.whl", hash = "sha256:fcdf85684a772ddeba87db2f398ce00b40ff550d1528c03c14dbf6a02003cd80"},
+    {file = "traitlets-5.14.2.tar.gz", hash = "sha256:8cdd83c040dab7d1dee822678e5f5d100b514f7b72b01615b26fc5718916fdf9"},
 ]
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
-test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.1)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
 name = "types-pkg-resources"
@@ -3113,24 +3257,24 @@ files = [
 
 [[package]]
 name = "types-python-dateutil"
-version = "2.8.19.20240106"
+version = "2.9.0.20240316"
 description = "Typing stubs for python-dateutil"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "types-python-dateutil-2.8.19.20240106.tar.gz", hash = "sha256:1f8db221c3b98e6ca02ea83a58371b22c374f42ae5bbdf186db9c9a76581459f"},
-    {file = "types_python_dateutil-2.8.19.20240106-py3-none-any.whl", hash = "sha256:efbbdc54590d0f16152fa103c9879c7d4a00e82078f6e2cf01769042165acaa2"},
+    {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"},
+    {file = "types_python_dateutil-2.9.0.20240316-py3-none-any.whl", hash = "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"},
 ]
 
 [[package]]
 name = "types-requests"
-version = "2.31.0.20240218"
+version = "2.31.0.20240311"
 description = "Typing stubs for requests"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "types-requests-2.31.0.20240218.tar.gz", hash = "sha256:f1721dba8385958f504a5386240b92de4734e047a08a40751c1654d1ac3349c5"},
-    {file = "types_requests-2.31.0.20240218-py3-none-any.whl", hash = "sha256:a82807ec6ddce8f00fe0e949da6d6bc1fbf1715420218a9640d695f70a9e5a9b"},
+    {file = "types-requests-2.31.0.20240311.tar.gz", hash = "sha256:b1c1b66abfb7fa79aae09097a811c4aa97130eb8831c60e47aee4ca344731ca5"},
+    {file = "types_requests-2.31.0.20240311-py3-none-any.whl", hash = "sha256:47872893d65a38e282ee9f277a4ee50d1b28bd592040df7d1fdaffdf3779937d"},
 ]
 
 [package.dependencies]
@@ -3180,17 +3324,17 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "wasmtime"
-version = "18.0.2"
+version = "19.0.0"
 description = "A WebAssembly runtime powered by Wasmtime"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "wasmtime-18.0.2-py3-none-any.whl", hash = "sha256:49625d389ddd766f5416a1723a76a25473df1dbe6ad706902b7bdbfa549ec3df"},
-    {file = "wasmtime-18.0.2-py3-none-macosx_10_13_x86_64.whl", hash = "sha256:190f182e51f7f0e5340a7ffeb01519eb759748872a2bb227c6b1c055cbee61ce"},
-    {file = "wasmtime-18.0.2-py3-none-macosx_11_0_arm64.whl", hash = "sha256:817c780eb506deaabe31cf23c5e9fe9ab9a1815bc0b805d292ec7502c495e10a"},
-    {file = "wasmtime-18.0.2-py3-none-manylinux1_x86_64.whl", hash = "sha256:30adbf2fb380aae2d7cfd18c6f14d7633d62a8204caf185b7557b2364533268d"},
-    {file = "wasmtime-18.0.2-py3-none-manylinux2014_aarch64.whl", hash = "sha256:c43d281df87af4139735aa62950d855499f58f72778b0e7a79488b3b8807d108"},
-    {file = "wasmtime-18.0.2-py3-none-win_amd64.whl", hash = "sha256:7ccc88a9ee2bb601dbd1dc065a22af7b2f1a85c39b1aa8ebfb8ea57f78157d35"},
+    {file = "wasmtime-19.0.0-py3-none-any.whl", hash = "sha256:229075695c97d3220336ab08a0cf6350c6f29b29663b3530d25a9d8aa59db801"},
+    {file = "wasmtime-19.0.0-py3-none-macosx_10_13_x86_64.whl", hash = "sha256:43fb95b952b4387a852834477d8d094f3891cdccd4c0f6c8833cfafb5ec8d35b"},
+    {file = "wasmtime-19.0.0-py3-none-macosx_11_0_arm64.whl", hash = "sha256:6e0625e3d9b5fa850f6098fad3d081f496095f4705c76bf88144d3dec20e6557"},
+    {file = "wasmtime-19.0.0-py3-none-manylinux1_x86_64.whl", hash = "sha256:d844128add3ba40d3a667115812ed8064089a76e775c49dc4d43dcf034c15436"},
+    {file = "wasmtime-19.0.0-py3-none-manylinux2014_aarch64.whl", hash = "sha256:85890d926adad42dbfe5a772796f452fc42f87a4fda3b982cea842c52dbf734f"},
+    {file = "wasmtime-19.0.0-py3-none-win_amd64.whl", hash = "sha256:7b8eb96d270e042442389a3d13c1d51b44c55e5d53c27e33a934d22ef6e2a95f"},
 ]
 
 [package.extras]
@@ -3333,4 +3477,4 @@ files = [
 [metadata]
 lock-version = "2.0"
 python-versions = "<3.12,>=3.10"
-content-hash = "7df4e9bf8a956112dd52f4e85c3a0a169c96b6078ff5520fae2e5a6e1d894381"
+content-hash = "d52f7ef0b09e961814b4fad8a8b86cd3a55606f9c7d715332e0c00a70b53a0d6"
diff --git a/pytket-mbqc-py/pyproject.toml b/pytket-mbqc-py/pyproject.toml
index 6b2969b8..829cb9e9 100644
--- a/pytket-mbqc-py/pyproject.toml
+++ b/pytket-mbqc-py/pyproject.toml
@@ -8,13 +8,15 @@ readme = "README.md"
 [tool.poetry.dependencies]
 python = "<3.12,>=3.10"
 notebook = "^6.5.0"
-pytket-quantinuum = "^0.29.0"
+pytket-quantinuum = "^0.32.0"
 pytket_pecos = "^0.1.15"
 pytest = "^8.0.1"
 pytest-cov = "^4.1.0"
 ruff = "^0.2.2"
 mypy = "^1.8.0"
 importlib-resources = "^6.1.2"
+pytest-parallel = "^0.1.1"
+py = "^1.11.0"
 
 [build-system]
 requires = ["poetry-core"]
diff --git a/pytket-mbqc-py/pytket_mbqc_py/__init__.py b/pytket-mbqc-py/pytket_mbqc_py/__init__.py
index 06355afc..528307b8 100644
--- a/pytket-mbqc-py/pytket_mbqc_py/__init__.py
+++ b/pytket-mbqc-py/pytket_mbqc_py/__init__.py
@@ -1,3 +1,3 @@
 from .qubit_manager import QubitManager
 from .graph_circuit import GraphCircuit
-from .wasm_file_handler import get_wasm_file_handler
+from .cnot_block import CNOTBlocksGraphCircuit
diff --git a/pytket-mbqc-py/pytket_mbqc_py/cnot_block.py b/pytket-mbqc-py/pytket_mbqc_py/cnot_block.py
new file mode 100644
index 00000000..478c5d0e
--- /dev/null
+++ b/pytket-mbqc-py/pytket_mbqc_py/cnot_block.py
@@ -0,0 +1,209 @@
+"""Class for generating graph states implementing layers of
+CNOT gates.
+"""
+from .graph_circuit import GraphCircuit
+from typing import Tuple, List
+
+
+class CNOTBlocksGraphCircuit(GraphCircuit):
+    """Class for generating graph state implementing
+    layers of CNOT gates. Consider an n qubit input state
+    initialised in a computational bases state. A 'layer' of CNOT gates
+    consists of a CNOT gate acting between qubit 1 and 2, then
+    another between 2 and 3, etc until a CNOT acts between qubit n-1 and n.
+    Note that as the inputs are initialised in computational basis states
+    the CNOT gates can be considered to be classical CNOT gates,
+    and the ideal outcome is deterministic.
+    """
+
+    def __init__(
+        self,
+        n_physical_qubits: int,
+        input_state: Tuple[int],
+        n_layers: int,
+    ) -> None:
+        """Initialisation method.
+
+        :param n_physical_qubits: The maximum number of physical qubits
+            available. These qubits will be reused and so the total
+            number of 'logical' qubits may be larger.
+        :type n_physical_qubits: int
+        :param input_state: Integer tuple describing the input
+            to the circuit. This will be a classical binary
+            string and so the outcome is deterministic.
+        :type input_state: Tuple[int]
+        :param n_layers: The number of layers of CNOT gates.
+        :type n_layers: int
+        """
+
+        self.input_state = input_state
+        self.n_layers = n_layers
+
+        # The number of rows of CNOT blocks
+        # note that this is one less than the number of entries in the
+        # input state as each CNOT has two inputs.
+        n_rows = len(input_state) - 1
+
+        # This structure contains information about which
+        # vertices in the graph state corresponds to which
+        # vertices in each of the CNOT blocks.
+        # Note that each CNOT block contains 6 vertices implementing
+        # a CNOT gate. However as some of these may be outputs from
+        # other CNOT blocks and so there may be repeats.
+        cnot_block_vertex_list: List[List[List[int]]] = [
+            [[] for _ in range(n_rows)] for _ in range(n_layers)
+        ]
+
+        super().__init__(n_physical_qubits=n_physical_qubits)
+
+        for layer in range(n_layers):
+            # If this is the first layer then the control qubit of the first row needs
+            # to be initialised. If not then the control vertex is taken from
+            # the layer before.
+            if layer == 0:
+                control_qubit, control_vertex = self.add_input_vertex()
+                if input_state[0]:
+                    self.X(control_qubit)
+            else:
+                control_vertex = cnot_block_vertex_list[layer - 1][0][4]
+
+            for row in range(n_rows):
+                # for each block the 0th qubit is the control.
+                cnot_block_vertex_list[layer][row].append(control_vertex)
+
+                # If this is the 0th layer then the target qubit needs to be
+                # initialised.
+                if layer == 0:
+                    target_qubit, target_vertex = self.add_input_vertex()
+                    if input_state[row + 1]:
+                        self.X(target_qubit)
+                # If this is the last row then the target vertex is the output
+                # target vertex of the cnot on the same row but previous
+                # layer.
+                elif row == n_rows - 1:
+                    target_vertex = cnot_block_vertex_list[layer - 1][row][5]
+                # Otherwise the target vertex is the output control vertex
+                # of the CNOT block in the previous layer and the next row.
+                else:
+                    target_vertex = cnot_block_vertex_list[layer - 1][row + 1][4]
+                cnot_block_vertex_list[layer][row].append(target_vertex)
+
+                # Now the rest of the CNOT block can be constructed.
+                cnot_block_vertex_list[layer][row].append(self.add_graph_vertex())
+                self.add_edge(
+                    vertex_one=cnot_block_vertex_list[layer][row][0],
+                    vertex_two=cnot_block_vertex_list[layer][row][2],
+                )
+
+                cnot_block_vertex_list[layer][row].append(self.add_graph_vertex())
+                self.add_edge(
+                    vertex_one=cnot_block_vertex_list[layer][row][1],
+                    vertex_two=cnot_block_vertex_list[layer][row][3],
+                )
+
+                cnot_block_vertex_list[layer][row].append(self.add_graph_vertex())
+                self.add_edge(
+                    vertex_one=cnot_block_vertex_list[layer][row][2],
+                    vertex_two=cnot_block_vertex_list[layer][row][4],
+                )
+
+                cnot_block_vertex_list[layer][row].append(self.add_graph_vertex())
+                self.add_edge(
+                    vertex_one=cnot_block_vertex_list[layer][row][3],
+                    vertex_two=cnot_block_vertex_list[layer][row][5],
+                )
+                self.add_edge(
+                    vertex_one=cnot_block_vertex_list[layer][row][3],
+                    vertex_two=cnot_block_vertex_list[layer][row][4],
+                )
+
+                # The control vertex of the next row will be the
+                # output target vertex of this row.
+                control_vertex = cnot_block_vertex_list[layer][row][5]
+
+                # If this is not the 0th layer then the previous layer
+                # can be measured.
+                if layer > 0:
+                    # If this is the 1th later then the inputs of the previous
+                    # layer (the 0th layer) will not have been measured and should now be.
+                    # Note that or other layers they will have been measured by this point
+                    # as they are the 4th and 5th vertices of previous layers.
+                    if layer == 1:
+                        # If this is the 0th row then we need to measure the input
+                        # control. It is not necessary in general as it would be the
+                        # output target of previous blocks.
+                        if row == 0:
+                            self.corrected_measure(
+                                vertex=cnot_block_vertex_list[layer - 1][row][0],
+                                t_multiple=0,
+                            )
+
+                        self.corrected_measure(
+                            vertex=cnot_block_vertex_list[layer - 1][row][1],
+                            t_multiple=0,
+                        )
+
+                    # The rest of the block is measured.
+                    self.corrected_measure(
+                        vertex=cnot_block_vertex_list[layer - 1][row][2],
+                        t_multiple=0,
+                    )
+                    self.corrected_measure(
+                        vertex=cnot_block_vertex_list[layer - 1][row][3],
+                        t_multiple=0,
+                    )
+                    self.corrected_measure(
+                        vertex=cnot_block_vertex_list[layer - 1][row][4],
+                        t_multiple=0,
+                    )
+                    self.corrected_measure(
+                        vertex=cnot_block_vertex_list[layer - 1][row][5],
+                        t_multiple=0,
+                    )
+
+        # When we reach the end we can measure everything that is not the output.
+        for row in range(n_rows):
+            # If there is only 1 layer then the inputs will need to be
+            # measured. If there are more layers then they will already
+            # have been measured as inputs to previous later layers.
+            if n_layers == 1:
+                self.corrected_measure(
+                    vertex=cnot_block_vertex_list[0][row][0],
+                    t_multiple=0,
+                )
+                self.corrected_measure(
+                    vertex=cnot_block_vertex_list[0][row][1],
+                    t_multiple=0,
+                )
+
+            # If there is more than one layer then the output
+            # qubit in blocks on rows greater then 1 are yet to be measured.
+            # they are measured on the 0th row as these are output controls
+            # of previous rows.
+            elif row > 0:
+                self.corrected_measure(
+                    vertex=cnot_block_vertex_list[n_layers - 1][row][0],
+                    t_multiple=0,
+                )
+
+            self.corrected_measure(
+                vertex=cnot_block_vertex_list[n_layers - 1][row][2],
+                t_multiple=0,
+            )
+            self.corrected_measure(
+                vertex=cnot_block_vertex_list[n_layers - 1][row][3],
+                t_multiple=0,
+            )
+
+    @property
+    def output_state(self) -> Tuple[int, ...]:
+        """The ideal output bit string.
+
+        :return: The ideal output bit string.
+        :rtype: Tuple[int]
+        """
+        output_state = list(self.input_state)
+        for _ in range(self.n_layers):
+            for i in range(len(self.input_state) - 1):
+                output_state[i + 1] = output_state[i] ^ output_state[i + 1]
+        return tuple(output_state)
diff --git a/pytket-mbqc-py/pytket_mbqc_py/graph_circuit.py b/pytket-mbqc-py/pytket_mbqc_py/graph_circuit.py
index e86a72e0..c9c7077f 100644
--- a/pytket-mbqc-py/pytket_mbqc_py/graph_circuit.py
+++ b/pytket-mbqc-py/pytket_mbqc_py/graph_circuit.py
@@ -1,203 +1,184 @@
 from pytket_mbqc_py.qubit_manager import QubitManager
 from typing import List, Tuple, Dict
 from pytket import Qubit
-from pytket_mbqc_py.wasm_file_handler import get_wasm_file_handler
 import networkx as nx  # type:ignore
 
 
 class GraphCircuit(QubitManager):
     def __init__(
         self,
-        n_qubits_total: int,
+        n_physical_qubits: int,
     ) -> None:
-        super().__init__(n_qubits=n_qubits_total)
+        super().__init__(n_physical_qubits=n_physical_qubits)
 
-        self.wfh = get_wasm_file_handler()
-        self.add_wasm_to_reg("init_corrections", self.wfh, [], [])
-
-        self.graph = nx.Graph()
-
-        self.vertex_flow: Dict[int, int] = dict()
-        self.vertex_flow_inverse: Dict[int, List[int]] = dict()
-
-        self.output_vertices: List[int] = []
+        self.entanglement_graph = nx.Graph()
+        self.flow_graph = nx.DiGraph()
 
         self.vertex_qubit: List[Qubit] = []
-
         self.vertex_measured: List[bool] = []
 
-        self.mbqc_begun = False
-
-    @property
-    def output_qubits(self) -> Dict[int, Qubit]:
-        output_vertices = [
+    def get_outputs(self) -> Dict[int, Qubit]:
+        unmeasured_flow_vertices = [
             vertex
-            for vertex, measured in enumerate(self.vertex_measured)
-            if not measured
-        ]
-        return {vertex: self.vertex_qubit[vertex] for vertex in output_vertices}
-
-    def correct_outputs(self) -> None:
-        unmeasured_graph_verices = [
-            vertex
-            for vertex in self.vertex_flow.keys()
+            for vertex in self._vertices_with_flow()
             if not self.vertex_measured[vertex]
         ]
-        if len(unmeasured_graph_verices) > 0:
+        if len(unmeasured_flow_vertices) > 0:
             raise Exception(
                 "Only output vertices can be unmeasured. "
-                + f"In particular {unmeasured_graph_verices} must be measured."
+                + f"In particular {unmeasured_flow_vertices} have flow but are not measured."
             )
 
-        for vertex in self.output_qubits.keys():
+        output_qubits = {
+            vertex: qubit
+            for vertex, qubit in enumerate(self.vertex_qubit)
+            if not self.vertex_measured[vertex]
+        }
+
+        for vertex in output_qubits.keys():
             self._apply_correction(vertex=vertex)
 
-    def _vertex_neighbour(self, vertex: int) -> List[int]:
-        return self.graph.neighbors(n=vertex)
+        return output_qubits
 
     def _add_vertex(self, qubit: Qubit) -> int:
         self.vertex_qubit.append(qubit)
         self.vertex_measured.append(False)
 
         index = len(self.vertex_qubit) - 1
-        self.graph.add_node(node_for_adding=index)
-        self.vertex_flow_inverse[index] = []
+        self.entanglement_graph.add_node(node_for_adding=index)
+        self.flow_graph.add_node(node_for_adding=index)
 
         return index
 
     def add_input_vertex(self) -> Tuple[Qubit, int]:
-        if len(self.vertex_qubit) == 100:
-            raise Exception("The current maximum number of vertices is 100.")
-
         qubit = super().get_qubit()
         index = self._add_vertex(qubit=qubit)
 
         return (qubit, index)
 
-    def add_output_vertex(self) -> int:
-        index = self.add_graph_vertex()
-        self.output_vertices.append(index)
-        return index
-
     def add_graph_vertex(self) -> int:
-        if len(self.vertex_qubit) == 100:
-            raise Exception("The current maximum number of vertices is 100.")
-
-        qubit = super().get_plus_state()
+        qubit = self.get_qubit()
+        self.H(qubit)
         index = self._add_vertex(qubit=qubit)
 
         return index
 
+    def _vertices_with_flow(self) -> List[int]:
+        return list(
+            set(
+                predecessor
+                for vertex in self.flow_graph.nodes
+                for predecessor in self.flow_graph.predecessors(vertex)
+            )
+        )
+
     def add_edge(self, vertex_one: int, vertex_two: int) -> None:
         if vertex_one > vertex_two:
-            raise Exception("Cannot add edge into the past.")
+            raise Exception(
+                f"{vertex_one} is greater than {vertex_two}. "
+                + "Cannot add edge into the past."
+            )
 
-        if vertex_one >= len(self.vertex_qubit):
-            raise Exception(f"There is no vertex with the index {vertex_one}.")
+        if vertex_one not in self.entanglement_graph.nodes:
+            raise Exception(
+                f"There is no vertex with the index {vertex_one}. "
+                + "Use the entanglement_graph attribute to see existing vertices."
+            )
 
-        if vertex_two >= len(self.vertex_qubit):
-            raise Exception(f"There is no vertex with the index {vertex_two}.")
+        if vertex_two not in self.entanglement_graph.nodes:
+            raise Exception(
+                f"There is no vertex with the index {vertex_two}. "
+                + "Use the entanglement_graph attribute to see existing vertices."
+            )
 
         if self.vertex_measured[vertex_one] or self.vertex_measured[vertex_two]:
             raise Exception("Cannot add edge after measure.")
 
         # vertex_two is a new neighbour of vertex_one. As such none of the vertices of which
-        # vertex_one is the flow can have been measued.
+        # vertex_one is the flow can have been measured.
         measured_inverse_flow = [
             flow_inverse
-            for flow_inverse in self.vertex_flow_inverse[vertex_one]
+            for flow_inverse in self.flow_graph.predecessors(vertex_one)
             if self.vertex_measured[flow_inverse]
         ]
         if len(measured_inverse_flow) > 0:
             raise Exception(
-                "This does not define a valid flow. "
+                f"Adding the edge ({vertex_one}, {vertex_two}) does not define a valid flow. "
                 + f"In particular {measured_inverse_flow} are the the inverse flow of {vertex_one} "
-                + "but have already been measured."
+                + "and have already been measured. "
+                + "The inverse flow of qubits to which you wish to attach edges must not be measured. "
             )
 
         # If this is the first future of vertex_one then it will be taken to be its flow.
         # This is only not the case if vertex_one is an output vertex, in which case it has no flow.
         # If vertex_two is to be the flow of vertex_one than we must check that neighbours of
         # vertex_two are measured after vertex_one.
-        if (vertex_one not in self.vertex_flow.keys()) and (
-            vertex_one not in self.output_vertices
-        ):
-            vertex_neighbours = self._vertex_neighbour(vertex=vertex_two)
-            if any(vertex < vertex_one for vertex in vertex_neighbours):
+        if vertex_one not in self._vertices_with_flow():
+            past_neighbours = [
+                vertex
+                for vertex in self.entanglement_graph.neighbors(n=vertex_two)
+                if vertex < vertex_one
+            ]
+            if len(past_neighbours) > 0:
                 raise Exception(
-                    "This circuit does not have a valid flow. "
-                    + f"In particular {[vertex for vertex in vertex_neighbours if vertex < vertex_one]} "
-                    + f"are neighbours of {vertex_two} but are in the past of {vertex_one}."
+                    f"Adding the edge ({vertex_one}, {vertex_two}) does not define a valid flow. "
+                    + f"In particular {past_neighbours} "
+                    + f"are neighbours of {vertex_two} but are in the past of {vertex_one}. "
+                    + f"As {vertex_two} would become the flow of {vertex_one} all of the "
+                    + f"neighbours of {vertex_two} must be in the past of {vertex_one}."
                 )
 
         # vertex_one is a neighbour of vertex_two. As such vertex_one must be measured after
         # any vertices of which vertex_two is its flow.
         if any(
             flow_inverse > vertex_one
-            for flow_inverse in self.vertex_flow_inverse[vertex_two]
+            for flow_inverse in self.flow_graph.predecessors(vertex_two)
         ):
             raise Exception(
                 "This does not define a valid flow. "
-                f"In partcular {vertex_two} is the flow of {self.vertex_flow_inverse[vertex_two]}, "
+                f"In particular {vertex_two} is the flow of {self.flow_graph.predecessors(vertex_two)}, "
                 f"some of which are measured before {vertex_one}."
             )
 
-        self.mbqc_begun = True
-
         # If this is the first future of vertex_one then it is taken to be its flow.
-        if vertex_one not in self.vertex_flow.keys() and (
-            vertex_one not in self.output_vertices
-        ):
-            self.vertex_flow[vertex_one] = vertex_two
-            self.vertex_flow_inverse[vertex_two].append(vertex_one)
+        if vertex_one not in self._vertices_with_flow():
+            self.flow_graph.add_edge(
+                u_of_edge=vertex_one,
+                v_of_edge=vertex_two,
+            )
 
         self.CZ(self.vertex_qubit[vertex_one], self.vertex_qubit[vertex_two])
 
-        assert vertex_one in self.graph.nodes
-        assert vertex_two in self.graph.nodes
-        self.graph.add_edge(
+        assert vertex_one in self.entanglement_graph.nodes
+        assert vertex_two in self.entanglement_graph.nodes
+        self.entanglement_graph.add_edge(
             u_of_edge=vertex_one,
             v_of_edge=vertex_two,
         )
 
     def _apply_correction(self, vertex: int) -> None:
-        self.add_c_setreg(vertex, self.index_reg)
-
-        self.add_wasm_to_reg(
-            "get_x_correction",
-            self.wfh,
-            [self.index_reg],
-            [self.qubit_x_corr_reg[self.vertex_qubit[vertex]]],
-        )
         self.X(
             self.vertex_qubit[vertex],
             condition=self.qubit_x_corr_reg[self.vertex_qubit[vertex]][0],
         )
 
-        self.add_wasm_to_reg(
-            "get_z_correction",
-            self.wfh,
-            [self.index_reg],
-            [self.qubit_z_corr_reg[self.vertex_qubit[vertex]]],
-        )
         self.Z(
             self.vertex_qubit[vertex],
             condition=self.qubit_z_corr_reg[self.vertex_qubit[vertex]][0],
         )
 
     def corrected_measure(self, vertex: int, t_multiple: int = 0) -> None:
-        if vertex in self.output_vertices:
-            raise Exception("This is an output qubit and cannot be measured.")
-
-        if not all(self.vertex_measured[:vertex]):
-            print(self.vertex_measured[:vertex])
+        if self.vertex_measured[vertex]:
             raise Exception(
-                "Measuremnt order has not been respected. "
-                + f"Vertices {[i for i, measured in enumerate(self.vertex_measured[:vertex]) if not measured]} "
-                + f"are in the past of {vertex} but have not been measured."
+                f"Vertex {vertex} has already been measured and cannot be measured again."
             )
 
-        self.mbqc_begun = True
+        if any(self.vertex_measured[vertex:]):
+            raise Exception(
+                f"Measuring {vertex} does not respect the measurement order. "
+                + f"Vertices {[vertex + i for i, measured in enumerate(self.vertex_measured[vertex:]) if measured]} "
+                + f"are in the future of {vertex} and have already been measured."
+            )
 
         self._apply_correction(vertex=vertex)
 
@@ -214,29 +195,34 @@ def corrected_measure(self, vertex: int, t_multiple: int = 0) -> None:
         self.managed_measure(qubit=self.vertex_qubit[vertex])
         self.vertex_measured[vertex] = True
 
-        # Check that the flow of the vertex being measued has
+        # Check that the flow of the vertex being measured has
         # not been measured.
-        assert not self.vertex_measured[self.vertex_flow[vertex]]
-
-        self.add_c_setreg(value=self.vertex_flow[vertex], arg=self.index_reg)
-        self.add_wasm_to_reg(
-            "update_x_correction",
-            self.wfh,
-            [self.qubit_meas_reg[self.vertex_qubit[vertex]], self.index_reg],
-            [],
+        assert len(list(self.flow_graph.successors(vertex))) <= 1
+
+        if len(list(self.flow_graph.successors(vertex))) == 0:
+            raise Exception(
+                f"Vertex {vertex} has no flow. "
+                "It is not possible to perform a corrected measure of a qubit without flow. "
+                "Please give this vertex a flow, or use the get_output to perform the necessary corrections."
+            )
+        vertex_flow = list(self.flow_graph.successors(vertex))[0]
+        assert not self.vertex_measured[vertex_flow]
+
+        self.add_classicalexpbox_bit(
+            self.qubit_meas_reg[self.vertex_qubit[vertex]][0]
+            ^ self.qubit_x_corr_reg[self.vertex_qubit[vertex_flow]][0],
+            [self.qubit_x_corr_reg[self.vertex_qubit[vertex_flow]][0]],
         )
 
-        for neigibour in self._vertex_neighbour(self.vertex_flow[vertex]):
-            if neigibour == vertex:
+        for neighbour in self.entanglement_graph.neighbors(n=vertex_flow):
+            if neighbour == vertex:
                 continue
 
-            # Check that the vertex being updated has not been measued
-            assert not self.vertex_measured[neigibour]
+            # Check that the vertex being updated has not been measured
+            assert not self.vertex_measured[neighbour]
 
-            self.add_c_setreg(value=neigibour, arg=self.index_reg)
-            self.add_wasm_to_reg(
-                "update_z_correction",
-                self.wfh,
-                [self.qubit_meas_reg[self.vertex_qubit[vertex]], self.index_reg],
-                [],
+            self.add_classicalexpbox_bit(
+                self.qubit_meas_reg[self.vertex_qubit[vertex]][0]
+                ^ self.qubit_z_corr_reg[self.vertex_qubit[neighbour]][0],
+                [self.qubit_z_corr_reg[self.vertex_qubit[neighbour]][0]],
             )
diff --git a/pytket-mbqc-py/pytket_mbqc_py/pytket_mbqc_rus.wasm b/pytket-mbqc-py/pytket_mbqc_py/pytket_mbqc_rus.wasm
deleted file mode 100755
index 981d9bb2..00000000
Binary files a/pytket-mbqc-py/pytket_mbqc_py/pytket_mbqc_rus.wasm and /dev/null differ
diff --git a/pytket-mbqc-py/pytket_mbqc_py/qubit_manager.py b/pytket-mbqc-py/pytket_mbqc_py/qubit_manager.py
index 4c9bf10f..15b4e775 100644
--- a/pytket-mbqc-py/pytket_mbqc_py/qubit_manager.py
+++ b/pytket-mbqc-py/pytket_mbqc_py/qubit_manager.py
@@ -1,15 +1,10 @@
 from pytket import Circuit
 from pytket.unit_id import Qubit, BitRegister
-import math
 
 
 class QubitManager(Circuit):
-    def __init__(self, n_qubits: int) -> None:
-        index_bits_required = max(1, math.ceil(math.log2(n_qubits)))
-        if index_bits_required >= 32:
-            raise Exception("You cannot index that many qubits.")
-
-        self.qubit_list = [Qubit(index=i) for i in range(n_qubits)]
+    def __init__(self, n_physical_qubits: int) -> None:
+        self.qubit_list = [Qubit(index=i) for i in range(n_physical_qubits)]
         self.qubit_initialised = {qubit: False for qubit in self.qubit_list}
         self.qubit_meas_reg = {
             qubit: BitRegister(name=f"meas_{i}", size=1)
@@ -35,9 +30,6 @@ def __init__(self, n_qubits: int) -> None:
             self.add_c_register(register=x_corr_reg)
             self.add_c_register(register=z_corr_reg)
 
-        self.index_reg = BitRegister(name="index", size=index_bits_required)
-        self.add_c_register(register=self.index_reg)
-
     def get_qubit(self) -> Qubit:
         if len(self.qubit_list) == 0:
             raise Exception("You have run out of qubits.")
@@ -50,20 +42,18 @@ def get_qubit(self) -> Qubit:
         self.add_c_setreg(0, self.qubit_x_corr_reg[qubit])
         self.add_c_setreg(0, self.qubit_z_corr_reg[qubit])
         self.add_c_setreg(0, self.qubit_meas_reg[qubit])
-
-        return qubit
-
-    def get_plus_state(self) -> Qubit:
-        qubit = self.get_qubit()
-
         self.Reset(qubit=qubit)
-        self.H(qubit=qubit)
 
         return qubit
 
-    def return_qubit(self, qubit: Qubit) -> None:
-        self.qubit_list.insert(0, qubit)
+    @property
+    def physical_qubits_used(self):
+        return [
+            qubit
+            for qubit, initialised in self.qubit_initialised.items()
+            if initialised
+        ]
 
     def managed_measure(self, qubit: Qubit) -> None:
-        super().Measure(qubit=qubit, bit=self.qubit_meas_reg[qubit][0])
-        self.return_qubit(qubit)
+        self.qubit_list.insert(0, qubit)
+        self.Measure(qubit=qubit, bit=self.qubit_meas_reg[qubit][0])
diff --git a/pytket-mbqc-py/pytket_mbqc_py/wasm_file_handler.py b/pytket-mbqc-py/pytket_mbqc_py/wasm_file_handler.py
deleted file mode 100644
index 70336dec..00000000
--- a/pytket-mbqc-py/pytket_mbqc_py/wasm_file_handler.py
+++ /dev/null
@@ -1,8 +0,0 @@
-from pytket import wasm
-import importlib_resources
-
-
-def get_wasm_file_handler():
-    return wasm.WasmFileHandler(
-        importlib_resources.files("pytket_mbqc_py").joinpath("pytket_mbqc_rus.wasm")
-    )
diff --git a/pytket-mbqc-py/tests/test_graph_circuit.py b/pytket-mbqc-py/tests/test_graph_circuit.py
index 9d71d427..0e8e3130 100644
--- a/pytket-mbqc-py/tests/test_graph_circuit.py
+++ b/pytket-mbqc-py/tests/test_graph_circuit.py
@@ -1,26 +1,25 @@
-from pytket_mbqc_py import get_wasm_file_handler
 from pytket.extensions.quantinuum import QuantinuumBackend, QuantinuumAPIOffline
-from pytket_mbqc_py import GraphCircuit
+from pytket_mbqc_py import GraphCircuit, CNOTBlocksGraphCircuit
 from pytket.unit_id import BitRegister
 import pytest
 
 
 def test_plus_state():
-    circuit = GraphCircuit(n_qubits_total=2)
+    circuit = GraphCircuit(n_physical_qubits=2)
 
-    input_qubit, index_one = circuit.add_input_vertex()
+    input_qubit, vertex_one = circuit.add_input_vertex()
     circuit.H(input_qubit)
 
-    circuit.add_output_vertex()
+    vertex_two = circuit.add_graph_vertex()
 
-    circuit.add_edge(vertex_one=0, vertex_two=1)
-    circuit.corrected_measure(vertex=0)
+    circuit.add_edge(vertex_one=vertex_one, vertex_two=vertex_two)
+    circuit.corrected_measure(vertex=vertex_one)
 
-    circuit._apply_correction(vertex=1)
+    output_qubits = circuit.get_outputs()
 
     output_reg = BitRegister(name="output", size=1)
     circuit.add_c_register(register=output_reg)
-    circuit.Measure(qubit=circuit.output_qubits[1], bit=output_reg[0])
+    circuit.Measure(qubit=output_qubits[vertex_two], bit=output_reg[0])
 
     backend = QuantinuumBackend(
         device_name="H1-1LE", api_handler=QuantinuumAPIOffline()
@@ -30,28 +29,30 @@ def test_plus_state():
     result = backend.run_circuit(
         circuit=compiled_circuit,
         n_shots=n_shots,
-        wasm_file_handler=get_wasm_file_handler(),
     )
 
     assert result.get_counts(output_reg)[(0,)] == 100
 
 
 def test_x_gate():
-    circuit = GraphCircuit(n_qubits_total=3)
+    circuit = GraphCircuit(n_physical_qubits=3)
 
-    input_qubit, index_one = circuit.add_input_vertex()
+    _, vertex_one = circuit.add_input_vertex()
 
-    circuit.add_graph_vertex()
-    circuit.add_edge(vertex_one=0, vertex_two=1)
-    circuit.add_output_vertex()
-    circuit.add_edge(vertex_one=1, vertex_two=2)
-    circuit.corrected_measure(vertex=0, t_multiple=0)
-    circuit.corrected_measure(vertex=1, t_multiple=4)
+    vertex_two = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_one, vertex_two=vertex_two)
+    vertex_three = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_two, vertex_two=vertex_three)
+    circuit.corrected_measure(vertex=vertex_one, t_multiple=0)
+    circuit.corrected_measure(vertex=vertex_two, t_multiple=4)
 
-    circuit._apply_correction(vertex=2)
+    output_qubits = circuit.get_outputs()
     output_reg = BitRegister(name="output", size=1)
     circuit.add_c_register(register=output_reg)
-    circuit.Measure(qubit=circuit.output_qubits[2], bit=output_reg[0])
+    circuit.Measure(
+        qubit=output_qubits[vertex_three],
+        bit=output_reg[0],
+    )
 
     backend = QuantinuumBackend(
         device_name="H1-1LE",
@@ -62,7 +63,6 @@ def test_x_gate():
     result = backend.run_circuit(
         circuit=compiled_circuit,
         n_shots=100,
-        wasm_file_handler=get_wasm_file_handler(),
     )
 
     assert result.get_counts(output_reg)[(1,)] == 100
@@ -73,48 +73,48 @@ def test_x_gate():
     [((0, 0), (0, 0)), ((0, 1), (0, 1)), ((1, 0), (1, 1)), ((1, 1), (1, 0))],
 )
 def test_cnot(input_state, output_state):
-    circuit = GraphCircuit(n_qubits_total=5)
+    circuit = GraphCircuit(n_physical_qubits=5)
 
-    target_qubit, _ = circuit.add_input_vertex()
+    target_qubit, vertex_one = circuit.add_input_vertex()
     if input_state[1]:
         circuit.X(target_qubit)
 
-    circuit.add_graph_vertex()
-    circuit.add_edge(vertex_one=0, vertex_two=1)
+    vertex_two = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_one, vertex_two=vertex_two)
 
-    control_qubit, _ = circuit.add_input_vertex()
+    control_qubit, vertex_three = circuit.add_input_vertex()
     if input_state[0]:
         circuit.X(control_qubit)
 
-    circuit.add_graph_vertex()
-    circuit.add_edge(vertex_one=1, vertex_two=3)
-    circuit.corrected_measure(vertex=0, t_multiple=0)
+    vertex_four = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_two, vertex_two=vertex_four)
+    circuit.corrected_measure(vertex=vertex_one, t_multiple=0)
 
-    circuit.add_graph_vertex()
-    circuit.add_edge(vertex_one=2, vertex_two=4)
+    vertex_five = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_three, vertex_two=vertex_five)
 
-    circuit.add_graph_vertex()
-    circuit.add_edge(vertex_one=3, vertex_two=5)
-    circuit.corrected_measure(vertex=1, t_multiple=0)
+    vertex_six = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_four, vertex_two=vertex_six)
+    circuit.corrected_measure(vertex=vertex_two, t_multiple=0)
 
-    circuit.add_output_vertex()
-    circuit.add_edge(vertex_one=4, vertex_two=6)
-    circuit.corrected_measure(vertex=2, t_multiple=0)
+    vertex_seven = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_five, vertex_two=vertex_seven)
+    circuit.corrected_measure(vertex=vertex_three, t_multiple=0)
 
-    circuit.add_output_vertex()
-    circuit.add_edge(vertex_one=5, vertex_two=7)
+    vertex_eight = circuit.add_graph_vertex()
+    circuit.add_edge(vertex_one=vertex_six, vertex_two=vertex_eight)
 
-    circuit.add_edge(vertex_one=5, vertex_two=6)
+    circuit.add_edge(vertex_one=vertex_six, vertex_two=vertex_seven)
 
-    circuit.corrected_measure(vertex=3, t_multiple=0)
-    circuit.corrected_measure(vertex=4, t_multiple=0)
-    circuit.corrected_measure(vertex=5, t_multiple=0)
+    circuit.corrected_measure(vertex=vertex_four, t_multiple=0)
+    circuit.corrected_measure(vertex=vertex_five, t_multiple=0)
+    circuit.corrected_measure(vertex=vertex_six, t_multiple=0)
 
-    circuit.correct_outputs()
+    output_qubits = circuit.get_outputs()
     output_reg = BitRegister(name="output", size=2)
     circuit.add_c_register(register=output_reg)
-    circuit.Measure(qubit=circuit.output_qubits[6], bit=output_reg[0])
-    circuit.Measure(qubit=circuit.output_qubits[7], bit=output_reg[1])
+    circuit.Measure(qubit=output_qubits[vertex_seven], bit=output_reg[0])
+    circuit.Measure(qubit=output_qubits[vertex_eight], bit=output_reg[1])
 
     api_offline = QuantinuumAPIOffline()
     backend = QuantinuumBackend(device_name="H1-1LE", api_handler=api_offline)
@@ -124,7 +124,78 @@ def test_cnot(input_state, output_state):
     result = backend.run_circuit(
         circuit=compiled_circuit,
         n_shots=n_shots,
-        wasm_file_handler=get_wasm_file_handler(),
     )
 
     assert result.get_counts(output_reg)[output_state] == n_shots
+
+
+@pytest.mark.parametrize(
+    "input_state, output_state, n_layers",
+    [
+        ((1, 0), (1, 1), 1),
+        ((1, 1), (1, 1), 2),
+        ((1, 1, 0), (1, 1, 1), 2),
+        ((0, 1, 0), (0, 1, 1), 3),
+        ((1, 1, 1), (1, 1, 1), 4),
+        ((0, 0, 1), (0, 0, 1), 1),
+        ((0, 1, 1), (0, 1, 0), 1),
+    ],
+)
+def test_cnot_block(input_state, output_state, n_layers):
+    n_physical_qubits = 20
+
+    circuit = CNOTBlocksGraphCircuit(
+        n_physical_qubits=n_physical_qubits,
+        input_state=input_state,
+        n_layers=n_layers,
+    )
+
+    output_vertex_quibts = circuit.get_outputs()
+    output_reg = BitRegister(name="output", size=len(output_vertex_quibts))
+    circuit.add_c_register(register=output_reg)
+    for i, qubit in enumerate(output_vertex_quibts.values()):
+        circuit.Measure(qubit=qubit, bit=output_reg[i])
+    assert circuit.output_state == output_state
+
+    api_offline = QuantinuumAPIOffline()
+    backend = QuantinuumBackend(device_name="H1-1LE", api_handler=api_offline)
+    compiled_circuit = backend.get_compiled_circuit(circuit)
+
+    n_shots = 100
+    result = backend.run_circuit(
+        circuit=compiled_circuit,
+        n_shots=n_shots,
+    )
+    assert result.get_counts(output_reg)[output_state] == n_shots
+
+
+@pytest.mark.high_compute
+def test_large_cnot_block():
+    input_state = (0, 1, 1, 0)
+    output_state = (0, 1, 0, 1)
+    n_layers = 3
+    n_physical_qubits = 20
+
+    circuit = CNOTBlocksGraphCircuit(
+        n_physical_qubits=n_physical_qubits,
+        input_state=input_state,
+        n_layers=n_layers,
+    )
+
+    output_vertex_quibts = circuit.get_outputs()
+    output_reg = BitRegister(name="output", size=len(output_vertex_quibts))
+    circuit.add_c_register(register=output_reg)
+    for i, qubit in enumerate(output_vertex_quibts.values()):
+        circuit.Measure(qubit=qubit, bit=output_reg[i])
+    assert circuit.output_state == output_state
+
+    api_offline = QuantinuumAPIOffline()
+    backend = QuantinuumBackend(device_name="H1-1LE", api_handler=api_offline)
+    compiled_circuit = backend.get_compiled_circuit(circuit)
+
+    n_shots = 100
+    result = backend.run_circuit(
+        circuit=compiled_circuit,
+        n_shots=n_shots,
+    )
+    assert result.get_counts(output_reg)[output_state] == n_shots