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Match fragment piece from white-list #13

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noahcape opened this issue Aug 10, 2024 · 0 comments
Open

Match fragment piece from white-list #13

noahcape opened this issue Aug 10, 2024 · 0 comments

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@noahcape
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Motivation: https://teichlab.github.io/scg_lib_structs/methods_html/BD_Rhapsody.html

One can specify f[CAGAGC] to match a sequence in a read. Due to the grammar, if one wants to match a variable length segment not at the end of a read a fragment must right flank a variable length segment. If a white-list of sequences exists to match, one should be able to write f[white-list.txt].

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